Wall clock time and date at job start Tue Mar 31 2020 01:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31662 * 119.68863 * 2 1 4 4 C 1.32406 * 121.80357 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52519 * 179.97438 * 4 3 2 6 6 C 1.39168 * 120.94878 * 359.97066 * 4 3 2 7 7 C 1.37963 * 119.26154 * 359.74504 * 6 4 3 8 8 C 1.39520 * 119.68673 * 179.97438 * 2 1 3 9 9 C 1.47623 * 120.49768 * 0.02562 * 8 2 1 10 10 O 1.21576 * 119.99705 * 328.27033 * 9 8 2 11 11 N 1.34781 * 120.00028 * 148.27778 * 9 8 2 12 12 C 1.47578 * 134.49030 * 175.03508 * 11 9 8 13 13 C 1.53948 * 86.11579 * 155.35276 * 12 11 9 14 14 O 1.42900 * 113.73985 * 269.14984 * 13 12 11 15 15 C 1.50702 * 113.74315 * 137.94841 * 13 12 11 16 16 H 1.07999 * 119.99872 * 1.92663 * 15 13 12 17 17 C 1.37874 * 120.00070 * 181.92384 * 15 13 12 18 18 N 1.31514 * 119.99896 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99832 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47040 * 269.99700 * 19 17 15 21 21 H 1.48498 * 109.47313 * 29.99851 * 19 17 15 22 22 H 1.48502 * 109.46889 * 149.99979 * 19 17 15 23 23 C 1.47818 * 134.45475 * 354.89263 * 11 9 8 24 24 H 1.09000 * 109.47208 * 264.32040 * 1 2 3 25 25 H 1.08996 * 109.47079 * 24.32425 * 1 2 3 26 26 H 1.09004 * 109.46619 * 144.32335 * 1 2 3 27 27 H 0.96698 * 114.00254 * 90.00117 * 5 4 3 28 28 H 1.07992 * 120.37178 * 180.02562 * 6 4 3 29 29 H 1.07993 * 120.82372 * 180.27819 * 7 6 4 30 30 H 1.08991 * 113.77464 * 41.05044 * 12 11 9 31 31 H 1.09002 * 113.86698 * 269.66290 * 12 11 9 32 32 H 0.96704 * 114.00142 * 178.07378 * 14 13 12 33 33 H 0.97004 * 119.99551 * 179.97438 * 18 17 15 34 34 H 1.09001 * 113.76725 * 90.38488 * 23 11 9 35 35 H 1.08996 * 113.83556 * 318.92158 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1438 0.0000 4 6 3.4823 1.1926 -0.0005 5 8 4.1060 2.3955 -0.0010 6 6 4.2415 0.0263 -0.0004 7 6 3.6008 -1.1955 0.0055 8 6 2.1980 -1.2121 0.0005 9 6 1.4640 -2.4929 0.0005 10 8 0.3846 -2.5749 0.5539 11 7 1.9906 -3.5714 -0.6127 12 6 1.5974 -4.9890 -0.7303 13 6 2.4199 -5.0006 -2.0316 14 8 1.6591 -4.6727 -3.1959 15 6 3.2591 -6.2399 -2.2079 16 1 3.2194 -7.0283 -1.4709 17 6 4.0776 -6.3671 -3.3101 18 7 4.1256 -5.4072 -4.2078 19 14 5.1173 -7.9036 -3.5290 20 1 6.4383 -7.7038 -2.8807 21 1 4.4286 -9.0607 -2.9029 22 1 5.3115 -8.1675 -4.9774 23 6 3.1927 -3.8079 -1.4398 24 1 -0.3633 -0.1017 1.0226 25 1 -0.3633 0.9364 -0.4233 26 1 -0.3633 -0.8348 -0.5994 27 1 4.2874 2.7449 0.8822 28 1 5.3202 0.0771 -0.0004 29 1 4.1650 -2.1162 0.0102 30 1 0.5288 -5.1372 -0.8847 31 1 2.0064 -5.6265 0.0536 32 1 2.1782 -4.6501 -4.0115 33 1 4.7017 -5.4966 -4.9831 34 1 4.0722 -4.0962 -0.8641 35 1 3.3951 -3.0148 -2.1596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356549220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:20 Heat of formation + Delta-G solvation = -74.822845 kcal Electronic energy + Delta-G solvation = -21592.734028 eV Core-core repulsion = 18170.612119 eV Total energy + Delta-G solvation = -3422.121909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01377 -40.85953 -39.17536 -37.99386 -35.88619 -34.21776 -34.13469 -32.76739 -30.53603 -28.68695 -27.09559 -27.03948 -24.99630 -23.42838 -22.01359 -20.34444 -19.79653 -19.29958 -18.24095 -17.99411 -17.33829 -16.93310 -16.87500 -16.19228 -15.92820 -15.40122 -15.04052 -14.93057 -14.64878 -14.39437 -14.00864 -13.90135 -13.54648 -13.40463 -13.24591 -13.14694 -12.85138 -12.80058 -12.73933 -12.25692 -12.21076 -11.44082 -11.06096 -11.03759 -10.70508 -10.60729 -10.24704 -9.98742 -9.54795 -8.25744 -6.42927 -0.51333 0.02715 1.47554 1.51962 1.59915 1.63381 1.84353 2.39264 2.42125 2.58910 2.97232 3.31302 3.42815 3.57942 3.77104 3.88661 4.12964 4.17341 4.41662 4.44587 4.54956 4.60964 4.65577 4.73329 4.81741 4.88470 4.91846 4.98103 5.07050 5.22611 5.38282 5.73457 5.93271 6.51204 6.63498 6.70971 6.77186 7.03616 7.30930 7.43593 8.80188 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023392 B = 0.004906 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.681609 B = 5705.550878 C = 6430.889737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.195 3.805 3 N -0.526 5.526 4 C 0.334 3.666 5 O -0.483 6.483 6 C -0.187 4.187 7 C -0.021 4.021 8 C -0.207 4.207 9 C 0.574 3.426 10 O -0.576 6.576 11 N -0.628 5.628 12 C 0.115 3.885 13 C 0.217 3.783 14 O -0.588 6.588 15 C -0.554 4.554 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.917 5.917 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.287 1.287 23 C 0.092 3.908 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.426 0.574 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.387 0.613 33 H 0.275 0.725 34 H 0.102 0.898 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.137 9.039 8.000 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 N -0.247 5.247 4 C 0.154 3.846 5 O -0.294 6.294 6 C -0.208 4.208 7 C -0.047 4.047 8 C -0.212 4.212 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.360 5.360 12 C -0.007 4.007 13 C 0.176 3.824 14 O -0.399 6.399 15 C -0.592 4.592 16 H 0.093 0.907 17 C -0.166 4.166 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.212 1.212 23 C -0.030 4.030 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.289 0.711 28 H 0.198 0.802 29 H 0.174 0.826 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.241 0.759 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.670 10.011 8.046 13.118 hybrid contribution 1.362 -1.356 -0.324 1.949 sum 4.032 8.655 7.722 12.281 Atomic orbital electron populations 1.20766 0.87177 1.03199 1.04089 1.21227 0.97605 0.85596 0.89859 1.67067 1.10911 1.29635 1.17059 1.19575 0.86563 0.86450 0.91967 1.84678 1.76136 1.32408 1.36173 1.22287 1.03500 0.90516 1.04450 1.21974 0.92128 1.00035 0.90546 1.20750 0.95633 0.93986 1.10847 1.17909 0.84840 0.83162 0.77617 1.90699 1.22411 1.85160 1.47571 1.50139 1.27333 1.08606 1.49943 1.23503 1.00241 0.79716 0.97238 1.20154 0.87703 0.91587 0.82956 1.86058 1.41223 1.92862 1.19784 1.21719 1.24359 1.04286 1.08868 0.90719 1.25719 0.96990 0.99109 0.94763 1.69474 1.40063 1.33952 1.12224 0.85417 0.78863 0.79386 0.77136 1.19534 1.19538 1.21228 1.24237 0.88784 0.98593 0.91373 0.89027 0.89377 0.91536 0.71117 0.80173 0.82632 0.92006 0.87207 0.75891 0.91524 0.88023 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 8.77 71.24 0.62 -2.26 16 2 C 0.20 6.36 6.81 42.89 0.29 6.65 16 3 N -0.53 -15.88 10.28 -295.91 -3.04 -18.92 16 4 C 0.33 8.36 7.74 84.83 0.66 9.02 16 5 O -0.48 -9.27 13.55 -87.98 -1.19 -10.47 16 6 C -0.19 -4.22 10.02 22.43 0.22 -4.00 16 7 C -0.02 -0.59 9.00 22.70 0.20 -0.38 16 8 C -0.21 -7.01 5.77 -19.99 -0.12 -7.13 16 9 C 0.57 22.92 7.28 86.72 0.63 23.55 16 10 O -0.58 -25.34 15.31 -3.96 -0.06 -25.40 16 11 N -0.63 -25.33 3.58 -843.33 -3.02 -28.35 16 12 C 0.11 4.76 8.23 86.49 0.71 5.48 16 13 C 0.22 9.98 1.40 -10.88 -0.02 9.96 16 14 O -0.59 -30.02 13.48 -148.98 -2.01 -32.03 16 15 C -0.55 -26.33 8.61 25.60 0.22 -26.11 16 16 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 17 C 0.04 1.65 5.40 84.65 0.46 2.11 16 18 N -0.92 -44.82 11.20 21.45 0.24 -44.58 16 19 Si 0.97 37.87 29.54 68.60 2.03 39.90 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.09 3.69 5.99 86.44 0.52 4.21 16 24 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.07 2.29 6.61 -2.39 -0.02 2.27 16 27 H 0.43 3.31 9.06 -74.06 -0.67 2.64 16 28 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.16 3.96 6.29 -2.91 -0.02 3.94 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.11 4.02 8.09 -2.39 -0.02 4.00 16 32 H 0.39 20.06 6.60 -74.05 -0.49 19.58 16 33 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 34 H 0.10 3.65 7.77 -2.39 -0.02 3.64 16 35 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 Total: -1.00 -61.66 304.39 -2.65 -64.31 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.01 Total: 34.44 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 4.41 Total: 21.09 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -5.82 Total: -91.85 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -3.26 Total: -67.89 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -61.66 -2.65 -64.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356549220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.509 kcal (2) G-P(sol) polarization free energy of solvation -61.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds