Wall clock time and date at job start Tue Mar 31 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 120.82371 * 2 1 4 4 C 1.38306 * 119.45964 * 180.02562 * 3 2 1 5 5 N 1.31911 * 121.18593 * 0.02562 * 4 3 2 6 6 C 1.32214 * 121.80381 * 359.65643 * 5 4 3 7 7 O 1.35422 * 119.80259 * 180.33424 * 6 5 4 8 8 C 1.39946 * 120.82435 * 180.02562 * 2 1 3 9 9 C 1.47527 * 120.59961 * 359.97438 * 8 2 1 10 10 O 1.21587 * 119.99799 * 89.99798 * 9 8 2 11 11 N 1.34774 * 119.99734 * 269.99274 * 9 8 2 12 12 C 1.47586 * 134.48934 * 179.97438 * 11 9 8 13 13 C 1.53949 * 86.11504 * 155.36070 * 12 11 9 14 14 O 1.42903 * 113.74102 * 269.15490 * 13 12 11 15 15 C 1.50694 * 113.74088 * 137.95266 * 13 12 11 16 16 H 1.08000 * 120.00563 * 1.92388 * 15 13 12 17 17 C 1.37885 * 119.99902 * 181.92552 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47807 * 134.45633 * 359.87113 * 11 9 8 24 24 H 1.09004 * 109.47216 * 269.97789 * 1 2 3 25 25 H 1.08996 * 109.47169 * 29.98294 * 1 2 3 26 26 H 1.09002 * 109.47273 * 149.98330 * 1 2 3 27 27 H 1.07999 * 120.26910 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.40780 * 179.97438 * 4 3 2 29 29 H 0.96700 * 113.99946 * 270.28768 * 7 6 5 30 30 H 1.08993 * 113.76952 * 41.05857 * 12 11 9 31 31 H 1.08993 * 113.76905 * 269.65828 * 12 11 9 32 32 H 0.96700 * 113.99800 * 178.07503 * 14 13 12 33 33 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 34 34 H 1.08995 * 113.77163 * 90.38050 * 23 11 9 35 35 H 1.09005 * 113.83876 * 318.91036 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1884 0.0000 4 6 3.5987 1.1554 -0.0005 5 7 4.2547 0.0110 -0.0016 6 6 3.6264 -1.1523 0.0046 7 8 4.3405 -2.3029 0.0102 8 6 2.2241 -1.2018 -0.0005 9 6 1.5184 -2.4973 -0.0005 10 8 1.2272 -3.0309 -1.0535 11 7 1.1967 -3.0894 1.1667 12 6 0.5130 -4.3441 1.5360 13 6 1.2917 -4.2557 2.8611 14 8 2.5526 -4.9277 2.8333 15 6 0.4673 -4.6033 4.0736 16 1 -0.5613 -4.9115 3.9572 17 6 1.0260 -4.5279 5.3319 18 7 2.2786 -4.1531 5.4738 19 14 0.0038 -4.9581 6.8350 20 1 0.8306 -4.7982 8.0582 21 1 -1.1716 -4.0537 6.9097 22 1 -0.4600 -6.3651 6.7321 23 6 1.3890 -2.7430 2.5906 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 1.6940 2.1338 -0.0004 28 1 4.1513 2.0834 -0.0010 29 1 4.5513 -2.6392 -0.8716 30 1 0.7941 -5.1962 0.9172 31 1 -0.5656 -4.2388 1.6524 32 1 3.0579 -4.8497 3.6541 33 1 2.6716 -4.0997 6.3590 34 1 0.5681 -2.1669 3.0174 35 1 2.3684 -2.3191 2.8126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356551259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:37 Heat of formation + Delta-G solvation = -50.839918 kcal Electronic energy + Delta-G solvation = -22012.921065 eV Core-core repulsion = 18591.839134 eV Total energy + Delta-G solvation = -3421.081931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.72258 -39.16546 -37.25546 -37.09910 -33.96403 -33.80167 -32.21132 -30.64453 -28.64006 -27.89318 -25.55726 -25.28409 -23.74595 -22.21013 -20.28629 -18.64807 -18.34975 -17.51638 -17.11090 -16.61340 -15.89525 -15.68287 -15.12851 -14.65534 -14.35602 -14.09738 -13.83435 -13.44044 -12.94289 -12.86307 -12.66731 -12.47512 -12.43374 -12.00132 -11.87004 -11.60391 -11.55986 -11.10466 -11.04828 -10.55023 -10.29884 -10.03334 -9.58076 -9.43700 -9.16484 -8.89374 -8.76359 -8.43978 -7.89330 -6.38474 -4.49806 0.86746 1.10976 2.97876 3.15713 3.22129 3.23727 3.37610 3.49659 3.82512 4.18195 4.54251 4.61142 4.77787 4.87625 5.00529 5.24562 5.34973 5.49759 5.51247 5.58862 5.79183 5.94187 5.95811 6.11594 6.13587 6.34912 6.41907 6.48950 6.59911 6.68582 7.08744 7.55527 7.62794 7.81544 7.87916 8.35714 8.53080 8.61429 9.21435 9.45040 10.68071 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.005360 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.299700 B = 5222.696448 C = 5247.094336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.004 3.996 3 C -0.190 4.190 4 C 0.133 3.867 5 N -0.507 5.507 6 C 0.350 3.650 7 O -0.468 6.468 8 C -0.177 4.177 9 C 0.586 3.414 10 O -0.560 6.560 11 N -0.616 5.616 12 C 0.112 3.888 13 C 0.242 3.758 14 O -0.569 6.569 15 C -0.540 4.540 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.080 3.920 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.142 0.858 28 H 0.163 0.837 29 H 0.402 0.598 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.392 0.608 33 H 0.274 0.726 34 H 0.081 0.919 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 10.281 -7.025 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.004 4.004 3 C -0.210 4.210 4 C -0.024 4.024 5 N -0.227 5.227 6 C 0.171 3.829 7 O -0.275 6.275 8 C -0.183 4.183 9 C 0.374 3.626 10 O -0.441 6.441 11 N -0.348 5.348 12 C -0.009 4.009 13 C 0.200 3.800 14 O -0.381 6.381 15 C -0.578 4.578 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.042 4.042 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.160 0.840 28 H 0.180 0.820 29 H 0.261 0.739 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.425 9.932 -7.594 12.510 hybrid contribution -0.969 0.067 0.997 1.393 sum -1.395 10.000 -6.597 12.061 Atomic orbital electron populations 1.20922 0.89591 1.03833 1.03623 1.20277 0.96985 0.91048 0.92137 1.21924 0.95484 0.98435 1.05155 1.22594 0.91503 0.95101 0.93195 1.67229 1.41926 0.98209 1.15310 1.19120 0.85551 0.85601 0.92636 1.84790 1.74273 1.34676 1.33726 1.21008 0.94256 0.95239 1.07801 1.17349 0.78998 0.83225 0.83065 1.90748 1.57200 1.65358 1.30801 1.50203 1.55288 1.23610 1.05681 1.23516 0.96925 0.85109 0.95387 1.19800 0.83369 0.86156 0.90699 1.86069 1.32152 1.76003 1.43880 1.21446 0.98599 1.47367 0.90362 0.91084 1.25080 0.95192 0.93254 0.99504 1.69409 1.12662 1.46673 1.24773 0.86397 0.79883 0.79298 0.80978 1.21004 1.19942 1.19825 1.24380 1.00620 1.03380 0.75867 0.89676 0.90377 0.90553 0.83983 0.82028 0.73914 0.90905 0.89409 0.75341 0.91595 0.90068 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.69 36.01 0.35 -1.16 16 2 C 0.00 0.05 5.95 -103.93 -0.62 -0.56 16 3 C -0.19 -2.20 9.79 -39.50 -0.39 -2.58 16 4 C 0.13 1.64 11.16 -17.49 -0.20 1.44 16 5 N -0.51 -8.13 10.37 -12.98 -0.13 -8.27 16 6 C 0.35 6.24 7.77 -16.60 -0.13 6.11 16 7 O -0.47 -8.39 13.02 -17.96 -0.23 -8.62 16 8 C -0.18 -3.17 5.40 -104.69 -0.56 -3.74 16 9 C 0.59 12.21 5.65 -12.47 -0.07 12.14 16 10 O -0.56 -12.90 17.83 5.29 0.09 -12.81 16 11 N -0.62 -13.23 3.61 -179.32 -0.65 -13.88 16 12 C 0.11 2.43 8.23 -2.96 -0.02 2.41 16 13 C 0.24 5.82 1.40 -90.83 -0.13 5.69 16 14 O -0.57 -14.91 13.49 -35.23 -0.48 -15.38 16 15 C -0.54 -13.45 8.61 -34.44 -0.30 -13.74 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 18 N -0.90 -22.91 11.20 55.43 0.62 -22.29 16 19 Si 0.91 19.38 29.54 -169.99 -5.02 14.36 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.08 1.77 8.00 -2.83 -0.02 1.75 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.08 1.09 7.19 -51.93 -0.37 0.71 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.40 5.28 9.06 45.56 0.41 5.69 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.09 1.71 8.09 -51.93 -0.42 1.29 16 32 H 0.39 10.41 6.60 45.56 0.30 10.71 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -31.18 311.21 -5.87 -37.05 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -2.58 Total: 15.68 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -2.18 Total: 9.47 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.16 Total: -44.43 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.61 Total: -36.81 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.18 -5.87 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.787 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds