Wall clock time and date at job start Tue Mar 31 2020 01:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00466 * 2 1 4 4 O 1.20835 * 119.99528 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00470 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.36865 * 120.00162 * 269.99708 * 6 5 3 8 8 H 1.08001 * 120.00096 * 19.06662 * 7 6 5 9 9 C 1.39045 * 120.00338 * 199.06480 * 7 6 5 10 10 N 1.31369 * 119.99941 * 15.90680 * 9 7 6 11 11 Si 1.86804 * 120.00375 * 195.91392 * 9 7 6 12 12 H 1.48499 * 109.46941 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47391 * 119.99368 * 11 9 7 14 14 H 1.48500 * 109.47147 * 239.99906 * 11 9 7 15 15 C 1.34776 * 119.99696 * 90.00056 * 6 5 3 16 16 O 1.21586 * 120.00222 * 242.75549 * 15 6 5 17 17 C 1.47723 * 120.00281 * 62.76124 * 15 6 5 18 18 C 1.39644 * 120.56449 * 20.64555 * 17 15 6 19 19 N 1.31649 * 120.55187 * 180.31415 * 18 17 15 20 20 C 1.31967 * 121.89032 * 359.71833 * 19 18 17 21 21 C 1.38322 * 121.09478 * 359.97438 * 20 19 18 22 22 C 1.38386 * 119.31279 * 0.02704 * 21 20 19 23 23 C 1.50701 * 120.85962 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47459 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47365 * 300.00449 * 1 2 3 26 26 H 1.09001 * 109.46996 * 60.00430 * 1 2 3 27 27 H 1.09001 * 109.47025 * 59.99618 * 5 3 2 28 28 H 1.09001 * 109.46930 * 299.99662 * 5 3 2 29 29 H 0.96998 * 120.00106 * 184.94875 * 10 9 7 30 30 H 1.08002 * 119.72330 * 0.02712 * 18 17 15 31 31 H 1.08001 * 119.45417 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.34854 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.46712 * 95.57246 * 23 22 21 34 34 H 1.08995 * 109.46845 * 335.57595 * 23 22 21 35 35 H 1.08994 * 109.47087 * 215.57367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1763 3.3352 -1.1858 8 1 3.7432 2.9460 -2.0954 9 6 4.9315 4.5022 -1.2193 10 7 5.7094 4.8104 -0.2065 11 14 4.8399 5.6319 -2.7042 12 1 3.8983 5.0628 -3.7016 13 1 4.3606 6.9714 -2.2784 14 1 6.1882 5.7591 -3.3133 15 6 4.1723 3.3266 1.1667 16 8 3.4790 4.2840 1.4514 17 6 5.2236 2.8726 2.0999 18 6 6.2863 2.0889 1.6455 19 7 7.2197 1.6793 2.4786 20 6 7.1958 1.9913 3.7606 21 6 6.1806 2.7690 4.2877 22 6 5.1744 3.2254 3.4544 23 6 4.0519 4.0753 3.9915 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9564 0.7804 -0.8891 28 1 3.9556 0.7809 0.8909 29 1 6.1807 5.6582 -0.1974 30 1 6.3404 1.8127 0.6028 31 1 7.9824 1.6342 4.4089 32 1 6.1731 3.0174 5.3387 33 1 4.2860 5.1282 3.8339 34 1 3.9310 3.8858 5.0581 35 1 3.1270 3.8269 3.4712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358572951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:15 Heat of formation + Delta-G solvation = -57.347335 kcal Electronic energy + Delta-G solvation = -22265.638399 eV Core-core repulsion = 18844.274285 eV Total energy + Delta-G solvation = -3421.364114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10691 -39.61809 -37.94542 -35.91555 -34.63707 -33.04796 -31.94937 -30.66556 -28.53935 -27.42479 -26.40700 -24.90601 -23.23576 -21.58096 -20.87284 -19.60474 -17.38433 -17.11837 -16.49360 -15.94448 -15.89938 -15.66023 -15.23956 -14.88221 -14.17894 -13.81983 -13.67744 -13.50383 -13.04209 -12.98150 -12.32530 -12.26182 -12.13154 -11.77636 -11.65861 -11.53037 -11.29159 -11.19056 -10.97801 -10.58571 -10.37769 -10.23707 -10.00922 -9.22238 -9.13768 -8.91956 -8.49445 -8.38758 -7.60821 -6.27790 -3.71708 1.43974 1.80080 2.85117 3.09255 3.24933 3.35502 3.37832 3.77517 4.22218 4.51720 4.71489 5.01593 5.16788 5.20627 5.32494 5.35144 5.38897 5.41753 5.58557 5.64518 5.71894 5.83552 5.94536 5.97905 6.14781 6.24954 6.32211 6.50991 6.61638 6.85487 6.93942 7.26537 7.47452 7.94532 8.39455 8.50118 8.84637 9.11142 9.33801 9.79096 10.85355 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.009503 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.313367 B = 2945.705877 C = 4473.738395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.372 6.372 3 C 0.421 3.579 4 O -0.481 6.481 5 C 0.143 3.857 6 N -0.528 5.528 7 C -0.292 4.292 8 H 0.086 0.914 9 C 0.031 3.969 10 N -0.880 5.880 11 Si 0.921 3.079 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.285 1.285 15 C 0.624 3.376 16 O -0.496 6.496 17 C -0.147 4.147 18 C 0.159 3.841 19 N -0.503 5.503 20 C 0.097 3.903 21 C -0.193 4.193 22 C -0.010 4.010 23 C -0.109 4.109 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.270 0.730 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -8.748 5.575 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.289 6.289 3 C 0.260 3.740 4 O -0.364 6.364 5 C 0.015 3.985 6 N -0.256 5.256 7 C -0.418 4.418 8 H 0.103 0.897 9 C -0.172 4.172 10 N -0.521 5.521 11 Si 0.748 3.252 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.211 1.211 15 C 0.414 3.586 16 O -0.369 6.369 17 C -0.153 4.153 18 C 0.002 3.998 19 N -0.213 5.213 20 C -0.059 4.059 21 C -0.213 4.213 22 C -0.019 4.019 23 C -0.165 4.165 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.181 0.819 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.655 -8.246 5.437 10.015 hybrid contribution -0.810 1.416 -0.421 1.684 sum -2.465 -6.830 5.016 8.825 Atomic orbital electron populations 1.23099 0.77965 1.02658 1.02122 1.86538 1.22340 1.34961 1.85069 1.25849 0.94098 0.81098 0.72988 1.90697 1.66628 1.36148 1.42967 1.20482 0.85977 0.87363 1.04701 1.42232 1.71244 1.07017 1.05061 1.19220 1.28419 1.09042 0.85129 0.89654 1.25023 0.94296 0.99130 0.98725 1.69383 1.27180 1.22818 1.32669 0.85975 0.77516 0.80613 0.81074 1.19705 1.20949 1.21117 1.17165 0.80471 0.81671 0.79251 1.90517 1.44570 1.28839 1.72985 1.21451 0.99822 1.00056 0.93949 1.23020 0.87545 0.90088 0.99172 1.67675 1.26523 1.23126 1.03939 1.22677 0.96615 0.94589 0.92033 1.21831 0.96572 1.02385 1.00555 1.20473 0.95279 0.93568 0.92571 1.20839 0.97091 0.99537 0.99042 0.88856 0.92532 0.92387 0.87087 0.89003 0.91876 0.81926 0.83525 0.85435 0.90249 0.92718 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.03 10.56 -39.25 -0.41 -6.45 16 3 C 0.42 8.29 8.02 36.00 0.29 8.58 16 4 O -0.48 -11.48 16.18 -18.76 -0.30 -11.78 16 5 C 0.14 2.71 5.86 -5.19 -0.03 2.68 16 6 N -0.53 -12.69 1.47 -117.22 -0.17 -12.86 16 7 C -0.29 -7.63 9.61 -15.01 -0.14 -7.77 16 8 H 0.09 2.16 7.88 -52.49 -0.41 1.75 16 9 C 0.03 0.83 5.12 -17.45 -0.09 0.74 16 10 N -0.88 -24.40 11.11 55.50 0.62 -23.78 16 11 Si 0.92 21.56 29.59 -169.99 -5.03 16.53 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.62 15.61 3.67 -12.39 -0.05 15.56 16 16 O -0.50 -13.97 14.47 5.29 0.08 -13.89 16 17 C -0.15 -3.20 5.20 -104.82 -0.55 -3.74 16 18 C 0.16 3.27 10.12 -17.11 -0.17 3.10 16 19 N -0.50 -9.47 10.34 -12.89 -0.13 -9.60 16 20 C 0.10 1.55 11.17 -17.46 -0.20 1.35 16 21 C -0.19 -3.07 9.78 -39.50 -0.39 -3.46 16 22 C -0.01 -0.20 5.95 -103.89 -0.62 -0.82 16 23 C -0.11 -1.95 8.75 36.01 0.31 -1.64 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.11 1.81 8.04 -51.93 -0.42 1.39 16 28 H 0.09 1.52 7.31 -51.93 -0.38 1.14 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.16 3.40 7.68 -52.49 -0.40 3.00 16 31 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.08 1.66 6.35 -51.93 -0.33 1.33 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -33.52 311.18 -5.26 -38.78 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.03 Total: 2.25 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: -0.56 Total: 16.11 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.31 Total: -46.24 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.64 Total: -32.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.52 -5.26 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358572951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.566 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds