Wall clock time and date at job start Tue Mar 31 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00466 * 2 1 4 4 O 1.20835 * 119.99528 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00470 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.36865 * 120.00162 * 269.99708 * 6 5 3 8 8 H 1.08001 * 120.00096 * 19.06662 * 7 6 5 9 9 C 1.39045 * 120.00338 * 199.06480 * 7 6 5 10 10 N 1.31369 * 119.99941 * 15.90680 * 9 7 6 11 11 Si 1.86804 * 120.00375 * 195.91392 * 9 7 6 12 12 H 1.48499 * 109.46941 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47391 * 119.99368 * 11 9 7 14 14 H 1.48500 * 109.47147 * 239.99906 * 11 9 7 15 15 C 1.34776 * 119.99696 * 90.00056 * 6 5 3 16 16 O 1.21586 * 120.00222 * 242.75549 * 15 6 5 17 17 C 1.47723 * 120.00281 * 62.76124 * 15 6 5 18 18 C 1.39644 * 120.56449 * 20.64555 * 17 15 6 19 19 N 1.31649 * 120.55187 * 180.31415 * 18 17 15 20 20 C 1.31967 * 121.89032 * 359.71833 * 19 18 17 21 21 C 1.38322 * 121.09478 * 359.97438 * 20 19 18 22 22 C 1.38386 * 119.31279 * 0.02704 * 21 20 19 23 23 C 1.50701 * 120.85962 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47459 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47365 * 300.00449 * 1 2 3 26 26 H 1.09001 * 109.46996 * 60.00430 * 1 2 3 27 27 H 1.09001 * 109.47025 * 59.99618 * 5 3 2 28 28 H 1.09001 * 109.46930 * 299.99662 * 5 3 2 29 29 H 0.96998 * 120.00106 * 184.94875 * 10 9 7 30 30 H 1.08002 * 119.72330 * 0.02712 * 18 17 15 31 31 H 1.08001 * 119.45417 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.34854 * 180.02562 * 21 20 19 33 33 H 1.08998 * 109.46712 * 95.57246 * 23 22 21 34 34 H 1.08995 * 109.46845 * 335.57595 * 23 22 21 35 35 H 1.08994 * 109.47087 * 215.57367 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1763 3.3352 -1.1858 8 1 3.7432 2.9460 -2.0954 9 6 4.9315 4.5022 -1.2193 10 7 5.7094 4.8104 -0.2065 11 14 4.8399 5.6319 -2.7042 12 1 3.8983 5.0628 -3.7016 13 1 4.3606 6.9714 -2.2784 14 1 6.1882 5.7591 -3.3133 15 6 4.1723 3.3266 1.1667 16 8 3.4790 4.2840 1.4514 17 6 5.2236 2.8726 2.0999 18 6 6.2863 2.0889 1.6455 19 7 7.2197 1.6793 2.4786 20 6 7.1958 1.9913 3.7606 21 6 6.1806 2.7690 4.2877 22 6 5.1744 3.2254 3.4544 23 6 4.0519 4.0753 3.9915 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9564 0.7804 -0.8891 28 1 3.9556 0.7809 0.8909 29 1 6.1807 5.6582 -0.1974 30 1 6.3404 1.8127 0.6028 31 1 7.9824 1.6342 4.4089 32 1 6.1731 3.0174 5.3387 33 1 4.2860 5.1282 3.8339 34 1 3.9310 3.8858 5.0581 35 1 3.1270 3.8269 3.4712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358572951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:13 Heat of formation + Delta-G solvation = -79.091000 kcal Electronic energy + Delta-G solvation = -22266.581275 eV Core-core repulsion = 18844.274285 eV Total energy + Delta-G solvation = -3422.306990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.68806 -41.10784 -39.63353 -37.46661 -36.44232 -34.53999 -33.86815 -32.13420 -30.03527 -28.87254 -27.82190 -26.66611 -24.79768 -23.06258 -22.39980 -21.32383 -19.15885 -18.65075 -18.09510 -17.41338 -17.38532 -17.05161 -16.91139 -16.61151 -15.96281 -15.58757 -15.13921 -14.94321 -14.46936 -14.36695 -13.86797 -13.70125 -13.51729 -13.50344 -13.21684 -12.99865 -12.89473 -12.84472 -12.75057 -12.49772 -12.09986 -11.73782 -11.71272 -11.04529 -10.78215 -10.35287 -10.17351 -9.89362 -9.50088 -8.28029 -5.73115 -0.03905 0.37577 1.28760 1.36587 1.43132 1.51462 1.68372 2.04971 2.40073 2.97498 3.02055 3.22390 3.66552 3.88067 3.93381 3.99866 4.16291 4.27705 4.31964 4.35329 4.37736 4.51054 4.66420 4.68033 4.70625 4.75486 4.92846 5.07627 5.21819 5.40542 5.41547 5.51708 5.86018 6.00163 6.85445 6.90161 7.07693 7.24557 7.47989 7.87555 8.83201 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.009503 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.313367 B = 2945.705877 C = 4473.738395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.429 3.571 4 O -0.531 6.531 5 C 0.139 3.861 6 N -0.544 5.544 7 C -0.297 4.297 8 H 0.087 0.913 9 C -0.019 4.019 10 N -0.903 5.903 11 Si 0.974 3.026 12 H -0.264 1.264 13 H -0.299 1.299 14 H -0.274 1.274 15 C 0.624 3.376 16 O -0.547 6.547 17 C -0.177 4.177 18 C 0.156 3.844 19 N -0.515 5.515 20 C 0.107 3.893 21 C -0.177 4.177 22 C -0.026 4.026 23 C -0.101 4.101 24 H 0.140 0.860 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.138 0.862 28 H 0.116 0.884 29 H 0.262 0.738 30 H 0.149 0.851 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -10.615 7.070 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.270 3.730 4 O -0.419 6.419 5 C 0.012 3.988 6 N -0.273 5.273 7 C -0.424 4.424 8 H 0.105 0.895 9 C -0.218 4.218 10 N -0.545 5.545 11 Si 0.801 3.199 12 H -0.188 1.188 13 H -0.226 1.226 14 H -0.200 1.200 15 C 0.417 3.583 16 O -0.424 6.424 17 C -0.183 4.183 18 C -0.001 4.001 19 N -0.224 5.224 20 C -0.049 4.049 21 C -0.196 4.196 22 C -0.034 4.034 23 C -0.157 4.157 24 H 0.158 0.842 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.134 0.866 29 H 0.072 0.928 30 H 0.167 0.833 31 H 0.213 0.787 32 H 0.192 0.808 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.763 -10.193 6.911 12.338 hybrid contribution -1.136 1.847 -0.768 2.300 sum -1.899 -8.346 6.142 10.535 Atomic orbital electron populations 1.23476 0.75687 1.05562 1.01774 1.86509 1.24417 1.32697 1.84157 1.25803 0.94314 0.81237 0.71622 1.90687 1.67673 1.37945 1.45583 1.20788 0.85619 0.85270 1.07106 1.42372 1.71654 1.08890 1.04337 1.19456 1.27499 1.09405 0.86057 0.89510 1.25757 0.94603 1.00458 1.01009 1.69517 1.28202 1.22588 1.34187 0.85142 0.77919 0.78073 0.78793 1.18776 1.22639 1.20013 1.17767 0.80114 0.80723 0.79675 1.90477 1.46497 1.30957 1.74436 1.21266 0.99722 1.02479 0.94811 1.22764 0.87836 0.90445 0.99058 1.67731 1.25872 1.23537 1.05293 1.23517 0.97219 0.92868 0.91298 1.22273 0.94628 1.00464 1.02227 1.20799 0.96658 0.93853 0.92138 1.20751 0.95412 0.98291 1.01294 0.84243 0.92973 0.92797 0.84411 0.86610 0.92800 0.83345 0.78724 0.80844 0.91970 0.88288 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -11.27 10.56 -51.39 -0.54 -11.81 16 3 C 0.43 16.96 8.02 71.23 0.57 17.53 16 4 O -0.53 -26.12 16.18 21.94 0.35 -25.76 16 5 C 0.14 5.27 5.86 85.63 0.50 5.77 16 6 N -0.54 -26.88 1.47 -643.03 -0.94 -27.82 16 7 C -0.30 -15.94 9.61 84.10 0.81 -15.13 16 8 H 0.09 4.48 7.88 -2.91 -0.02 4.45 16 9 C -0.02 -1.05 5.12 84.96 0.44 -0.61 16 10 N -0.90 -51.78 11.11 21.68 0.24 -51.54 16 11 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 C 0.62 32.30 3.67 86.75 0.32 32.62 16 16 O -0.55 -32.43 14.47 -3.99 -0.06 -32.49 16 17 C -0.18 -7.77 5.20 -19.99 -0.10 -7.87 16 18 C 0.16 6.36 10.12 85.06 0.86 7.22 16 19 N -0.51 -18.24 10.34 -194.68 -2.01 -20.26 16 20 C 0.11 2.97 11.17 84.69 0.95 3.91 16 21 C -0.18 -4.90 9.78 22.32 0.22 -4.68 16 22 C -0.03 -0.96 5.95 -19.39 -0.12 -1.08 16 23 C -0.10 -3.60 8.75 71.24 0.62 -2.97 16 24 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 27 H 0.14 4.39 8.04 -2.39 -0.02 4.38 16 28 H 0.12 3.79 7.31 -2.39 -0.02 3.78 16 29 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.15 6.34 7.68 -2.91 -0.02 6.32 16 31 H 0.20 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 35 H 0.05 2.14 6.35 -2.39 -0.02 2.12 16 Total: -1.00 -77.07 311.18 6.44 -70.63 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.11 Total: 15.02 kcal Atomic # 6 Polarization: 30.34 SS G_CDS: 6.26 Total: 36.60 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -2.72 Total: -99.62 kcal Atomic # 8 Polarization: -69.82 SS G_CDS: -0.25 Total: -70.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.07 6.44 -70.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358572951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -77.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds