Wall clock time and date at job start Mon Mar 30 2020 23:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48495 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47505 * 300.00414 * 3 2 1 6 6 H 1.48506 * 109.46842 * 60.00303 * 3 2 1 7 7 C 1.37872 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99842 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99567 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99435 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47162 * 179.97438 * 14 13 11 16 16 C 1.38256 * 120.00325 * 260.00590 * 15 14 13 17 17 C 1.38211 * 120.00062 * 180.27920 * 16 15 14 18 18 C 1.38258 * 119.99784 * 359.47854 * 17 16 15 19 19 C 1.38211 * 120.00113 * 0.49766 * 18 17 16 20 20 C 1.38214 * 119.99514 * 80.02192 * 15 14 13 21 21 N 1.48023 * 120.00248 * 359.97438 * 20 15 14 22 22 O 1.21793 * 119.99672 * 180.02562 * 21 20 15 23 23 O 1.21798 * 119.99773 * 359.97438 * 21 20 15 24 24 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46851 * 60.00380 * 9 7 2 26 26 H 1.08998 * 109.46864 * 300.00238 * 9 7 2 27 27 H 1.08994 * 109.47241 * 60.00034 * 10 9 7 28 28 H 1.09005 * 109.46953 * 300.00069 * 10 9 7 29 29 H 0.96993 * 120.00393 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.47242 * 60.00358 * 14 13 11 31 31 H 1.08994 * 109.47661 * 299.99933 * 14 13 11 32 32 H 1.08002 * 119.99676 * 359.97438 * 16 15 14 33 33 H 1.07998 * 120.00352 * 179.72818 * 17 16 15 34 34 H 1.08004 * 120.00386 * 180.25925 * 18 17 16 35 35 H 1.08001 * 120.00363 * 179.76462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2790 -4.9671 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 1.4333 -7.4030 -0.0008 15 6 2.4126 -8.5485 -0.0009 16 6 2.7038 -9.2089 -1.1801 17 6 3.5976 -10.2632 -1.1792 18 6 4.2085 -10.6504 -0.0009 19 6 3.9178 -9.9899 1.1779 20 6 3.0193 -8.9390 1.1779 21 7 2.7076 -8.2318 2.4404 22 8 3.2427 -8.5757 3.4791 23 8 1.9169 -7.3054 2.4402 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 3.1358 -6.1343 -0.0004 30 1 0.8070 -7.4609 -0.8911 31 1 0.8064 -7.4607 0.8889 32 1 2.2292 -8.9042 -2.1011 33 1 3.8218 -10.7820 -2.0995 34 1 4.9101 -11.4715 -0.0008 35 1 4.3921 -10.2948 2.0990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360037655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:52 Heat of formation + Delta-G solvation = -16.718099 kcal Electronic energy + Delta-G solvation = -20816.945012 eV Core-core repulsion = 17397.342714 eV Total energy + Delta-G solvation = -3419.602298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37934 -40.02736 -38.89908 -36.74595 -34.85488 -33.38579 -32.37547 -31.97498 -30.79996 -27.53497 -26.27703 -25.03143 -23.05759 -22.34738 -21.44865 -19.70424 -19.28173 -18.63513 -17.61222 -17.12790 -16.53968 -16.15700 -15.67373 -15.57879 -15.04788 -14.83937 -14.37322 -13.76779 -13.54299 -13.34112 -12.95351 -12.67691 -12.14871 -12.06548 -11.89373 -11.50452 -11.17721 -11.10103 -10.92450 -10.84241 -10.54134 -10.09153 -9.89834 -9.87432 -9.60609 -9.09966 -8.93075 -8.73981 -8.27019 -5.91132 -3.95146 -0.46138 0.39485 1.09226 1.22239 2.75409 3.33318 3.36249 3.42997 3.46425 3.63276 3.89568 3.91816 4.19172 4.40250 4.44621 4.52068 4.69551 5.05207 5.14240 5.31363 5.43828 5.48628 5.55404 5.70627 5.78904 5.84871 6.27522 6.31424 6.32744 6.65183 6.94724 7.52917 7.80127 7.87173 7.93349 8.13184 8.44246 8.83016 9.13654 9.68065 11.19860 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.003432 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.560772 B = 8157.315711 C = 8429.985244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.517 3.483 12 O -0.529 6.529 13 N -0.733 5.733 14 C 0.142 3.858 15 C -0.035 4.035 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.117 4.117 19 C -0.057 4.057 20 C -0.033 4.033 21 N 0.023 4.977 22 O -0.170 6.170 23 O -0.131 6.131 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.393 0.607 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 -25.520 -2.726 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.306 3.694 12 O -0.404 6.404 13 N -0.387 5.387 14 C 0.019 3.981 15 C -0.036 4.036 16 C -0.123 4.123 17 C -0.087 4.087 18 C -0.136 4.136 19 C -0.076 4.076 20 C -0.117 4.117 21 N 0.542 4.458 22 O -0.381 6.381 23 O -0.350 6.350 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.226 0.774 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.462 -25.733 -3.303 27.615 hybrid contribution 0.931 0.928 0.350 1.361 sum 10.394 -24.805 -2.953 27.056 Atomic orbital electron populations 1.70015 1.06022 1.26403 1.50372 1.25025 0.94825 0.99195 0.95379 0.86541 0.79995 0.83904 0.77548 1.19794 1.21079 1.21003 1.21263 0.92943 0.91035 1.51128 0.92612 1.18912 0.93181 0.89278 0.98719 1.21860 1.00752 0.91791 1.02408 1.21495 0.88629 0.85164 0.74112 1.90669 1.14368 1.87337 1.48000 1.46028 1.09503 1.04632 1.78581 1.20498 0.92418 0.80260 1.04938 1.20063 0.95501 0.97085 0.90998 1.21296 0.98158 0.95484 0.97319 1.21665 0.93344 0.94683 0.99009 1.21268 1.00578 1.00490 0.91239 1.21111 0.93778 0.91857 1.00888 1.21102 1.05785 1.00101 0.84696 1.43639 0.99440 1.00349 1.02360 1.94525 1.52725 1.70215 1.20682 1.94648 1.28418 1.19131 1.92766 0.93042 0.95817 0.95606 0.90178 0.90428 0.77430 0.90303 0.87809 0.83217 0.83789 0.83522 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.53 -15.20 9.11 -34.44 -0.31 -15.52 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.52 10.27 7.83 -10.99 -0.09 10.18 16 12 O -0.53 -12.73 15.98 5.56 0.09 -12.64 16 13 N -0.73 -10.80 4.80 -61.47 -0.29 -11.10 16 14 C 0.14 1.83 4.82 -5.19 -0.03 1.80 16 15 C -0.03 -0.33 5.25 -104.62 -0.55 -0.88 16 16 C -0.10 -0.67 9.67 -39.58 -0.38 -1.05 16 17 C -0.07 -0.30 10.05 -39.58 -0.40 -0.70 16 18 C -0.12 -0.53 10.05 -39.58 -0.40 -0.93 16 19 C -0.06 -0.41 9.56 -39.58 -0.38 -0.79 16 20 C -0.03 -0.35 6.85 -79.94 -0.55 -0.89 16 21 N 0.02 0.32 4.45 33.96 0.15 0.47 16 22 O -0.17 -2.41 18.45 -29.46 -0.54 -2.96 16 23 O -0.13 -2.13 14.76 -29.46 -0.43 -2.57 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.39 4.87 8.46 -40.82 -0.35 4.52 16 30 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 31 H 0.10 1.57 5.88 -51.93 -0.31 1.26 16 32 H 0.15 0.73 8.04 -52.49 -0.42 0.31 16 33 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 34 H 0.15 0.25 8.06 -52.48 -0.42 -0.18 16 35 H 0.15 0.94 7.61 -52.49 -0.40 0.54 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -36.49 313.76 -8.00 -44.49 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.96 Total: -1.18 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.45 Total: -9.14 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.59 Total: -37.72 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.89 Total: -18.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.49 -8.00 -44.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360037655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.770 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds