Wall clock time and date at job start Mon Mar 30 2020 23:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99782 * 2 1 4 4 H 1.48495 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47505 * 300.00414 * 3 2 1 6 6 H 1.48506 * 109.46842 * 60.00303 * 3 2 1 7 7 C 1.37872 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99842 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99567 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99435 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47162 * 179.97438 * 14 13 11 16 16 C 1.38256 * 120.00325 * 260.00590 * 15 14 13 17 17 C 1.38211 * 120.00062 * 180.27920 * 16 15 14 18 18 C 1.38258 * 119.99784 * 359.47854 * 17 16 15 19 19 C 1.38211 * 120.00113 * 0.49766 * 18 17 16 20 20 C 1.38214 * 119.99514 * 80.02192 * 15 14 13 21 21 N 1.48023 * 120.00248 * 359.97438 * 20 15 14 22 22 O 1.21793 * 119.99672 * 180.02562 * 21 20 15 23 23 O 1.21798 * 119.99773 * 359.97438 * 21 20 15 24 24 H 0.97004 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46851 * 60.00380 * 9 7 2 26 26 H 1.08998 * 109.46864 * 300.00238 * 9 7 2 27 27 H 1.08994 * 109.47241 * 60.00034 * 10 9 7 28 28 H 1.09005 * 109.46953 * 300.00069 * 10 9 7 29 29 H 0.96993 * 120.00393 * 359.97438 * 13 11 10 30 30 H 1.09005 * 109.47242 * 60.00358 * 14 13 11 31 31 H 1.08994 * 109.47661 * 299.99933 * 14 13 11 32 32 H 1.08002 * 119.99676 * 359.97438 * 16 15 14 33 33 H 1.07998 * 120.00352 * 179.72818 * 17 16 15 34 34 H 1.08004 * 120.00386 * 180.25925 * 18 17 16 35 35 H 1.08001 * 120.00363 * 179.76462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2790 -4.9671 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 1.4333 -7.4030 -0.0008 15 6 2.4126 -8.5485 -0.0009 16 6 2.7038 -9.2089 -1.1801 17 6 3.5976 -10.2632 -1.1792 18 6 4.2085 -10.6504 -0.0009 19 6 3.9178 -9.9899 1.1779 20 6 3.0193 -8.9390 1.1779 21 7 2.7076 -8.2318 2.4404 22 8 3.2427 -8.5757 3.4791 23 8 1.9169 -7.3054 2.4402 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 3.1358 -6.1343 -0.0004 30 1 0.8070 -7.4609 -0.8911 31 1 0.8064 -7.4607 0.8889 32 1 2.2292 -8.9042 -2.1011 33 1 3.8218 -10.7820 -2.0995 34 1 4.9101 -11.4715 -0.0008 35 1 4.3921 -10.2948 2.0990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360037655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:51 Heat of formation + Delta-G solvation = -41.893902 kcal Electronic energy + Delta-G solvation = -20818.036717 eV Core-core repulsion = 17397.342714 eV Total energy + Delta-G solvation = -3420.694003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31928 -40.94153 -40.20240 -37.79621 -36.08314 -35.52367 -33.30292 -32.95920 -32.44676 -28.72339 -27.60219 -26.45946 -23.79887 -23.59955 -22.83508 -21.30058 -20.11243 -19.58200 -18.87194 -18.57169 -17.75946 -17.22440 -17.00705 -16.62784 -16.40025 -16.25433 -15.65443 -14.84592 -14.71770 -14.37385 -14.18599 -13.95942 -13.74824 -13.25043 -13.20143 -12.84156 -12.59610 -12.50618 -12.42569 -12.30364 -11.94689 -11.91137 -11.64256 -11.28719 -10.91646 -10.60203 -10.57394 -10.25961 -10.06067 -8.17415 -6.31633 -1.30682 -0.12233 0.27584 0.40056 1.41995 1.44131 1.57291 1.72207 2.10435 2.41304 2.52730 3.14613 3.15317 3.30300 3.70006 3.95698 3.99468 4.02871 4.13964 4.36548 4.46353 4.53996 4.57667 4.68691 4.86810 5.03381 5.05537 5.12206 5.22462 5.35274 5.50445 5.54467 5.63561 5.85822 6.18021 6.41098 6.50798 6.86466 7.30686 7.38442 8.95580 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.003432 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.560772 B = 8157.315711 C = 8429.985244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.519 3.481 12 O -0.583 6.583 13 N -0.708 5.708 14 C 0.144 3.856 15 C -0.050 4.050 16 C -0.100 4.100 17 C -0.046 4.046 18 C -0.099 4.099 19 C -0.059 4.059 20 C -0.055 4.055 21 N 0.029 4.971 22 O -0.166 6.166 23 O -0.206 6.206 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.020 1.020 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.407 0.593 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.156 -27.807 -4.548 31.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.158 4.158 11 C 0.307 3.693 12 O -0.462 6.462 13 N -0.361 5.361 14 C 0.020 3.980 15 C -0.052 4.052 16 C -0.118 4.118 17 C -0.064 4.064 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.139 4.139 21 N 0.540 4.460 22 O -0.385 6.385 23 O -0.410 6.410 24 H 0.072 0.928 25 H 0.005 0.995 26 H -0.001 1.001 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.243 0.757 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.206 0.794 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.230 -27.987 -5.146 31.381 hybrid contribution -0.134 1.359 0.860 1.614 sum 13.095 -26.628 -4.286 29.981 Atomic orbital electron populations 1.70194 1.08303 1.27755 1.51466 1.26159 0.95768 1.03990 0.94611 0.85243 0.79217 0.77973 0.77610 1.17692 1.20369 1.20678 1.21731 0.93942 0.91622 1.50789 0.90727 1.18689 0.93668 0.92336 0.94808 1.21623 0.99397 0.90222 1.04529 1.21225 0.87800 0.86322 0.73932 1.90647 1.16500 1.88165 1.50928 1.45671 1.10154 1.04205 1.76028 1.20447 0.93277 0.80480 1.03769 1.19826 0.96058 0.97030 0.92292 1.21587 0.98310 0.95557 0.96394 1.22195 0.90748 0.92808 1.00612 1.21804 0.99904 1.00179 0.89798 1.21455 0.92772 0.90798 1.02764 1.21317 1.08178 1.01644 0.82759 1.44186 0.98443 0.99914 1.03460 1.94464 1.51946 1.69660 1.22390 1.94666 1.31024 1.21825 1.93453 0.92828 0.99496 1.00133 0.88601 0.87485 0.75723 0.89756 0.90727 0.81512 0.79521 0.79440 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.88 13.29 21.45 0.28 -60.59 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.98 45.43 29.54 68.60 2.03 47.46 16 4 H -0.25 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.07 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.48 4.26 29.85 0.13 2.61 16 10 C -0.12 -5.07 5.64 29.85 0.17 -4.91 16 11 C 0.52 21.64 7.83 87.66 0.69 22.33 16 12 O -0.58 -30.28 15.98 -3.03 -0.05 -30.32 16 13 N -0.71 -21.44 4.80 -466.79 -2.24 -23.68 16 14 C 0.14 3.85 4.82 85.63 0.41 4.26 16 15 C -0.05 -0.91 5.25 -19.86 -0.10 -1.01 16 16 C -0.10 -0.91 9.67 22.27 0.22 -0.70 16 17 C -0.05 -0.13 10.05 22.27 0.22 0.10 16 18 C -0.10 -0.34 10.05 22.27 0.22 -0.11 16 19 C -0.06 -0.66 9.56 22.27 0.21 -0.45 16 20 C -0.06 -1.09 6.85 36.37 0.25 -0.84 16 21 N 0.03 0.83 4.45 -46.46 -0.21 0.63 16 22 O -0.17 -4.83 18.45 18.90 0.35 -4.49 16 23 O -0.21 -7.35 14.76 18.89 0.28 -7.08 16 24 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 25 H -0.01 -0.86 8.10 -2.38 -0.02 -0.88 16 26 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 27 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 29 H 0.41 9.92 8.46 -92.71 -0.78 9.13 16 30 H 0.08 2.13 8.00 -2.38 -0.02 2.11 16 31 H 0.07 2.50 5.88 -2.39 -0.01 2.49 16 32 H 0.17 0.97 8.04 -2.91 -0.02 0.95 16 33 H 0.19 -0.91 8.06 -2.91 -0.02 -0.94 16 34 H 0.19 -0.76 8.06 -2.91 -0.02 -0.79 16 35 H 0.16 1.51 7.61 -2.91 -0.02 1.49 16 Total: -1.00 -87.58 313.76 3.89 -83.68 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 0.34 Total: 4.86 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.11 Total: -10.48 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.16 Total: -83.64 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: 0.58 Total: -41.89 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -87.58 3.89 -83.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360037655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.789 kcal (2) G-P(sol) polarization free energy of solvation -87.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds