Wall clock time and date at job start Tue Mar 31 2020 00:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47474 * 266.06454 * 3 2 1 5 5 H 1.48493 * 109.47330 * 26.06620 * 3 2 1 6 6 H 1.48502 * 109.46917 * 146.06685 * 3 2 1 7 7 C 1.40048 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99882 * 354.28235 * 7 2 1 9 9 C 1.46371 * 119.99831 * 174.27750 * 7 2 1 10 10 O 1.21685 * 120.00132 * 353.58957 * 9 7 2 11 11 N 1.34784 * 119.99764 * 173.86056 * 9 7 2 12 12 C 1.46963 * 120.59040 * 4.22373 * 11 9 7 13 13 C 1.53823 * 108.39762 * 124.75646 * 12 11 9 14 14 N 1.46969 * 108.57553 * 49.63624 * 13 12 11 15 15 C 1.34770 * 120.59526 * 124.67499 * 14 13 12 16 16 O 1.21613 * 119.99707 * 6.13794 * 15 14 13 17 17 C 1.47375 * 120.00105 * 186.14839 * 15 14 13 18 18 C 1.47029 * 127.19177 * 206.87361 * 17 15 14 19 19 C 1.34179 * 105.95295 * 179.97438 * 18 17 15 20 20 O 1.34217 * 109.12346 * 359.97438 * 19 18 17 21 21 C 1.33645 * 110.90800 * 359.76313 * 20 19 18 22 22 C 1.46963 * 118.81270 * 304.64303 * 14 13 12 23 23 C 1.46961 * 120.59247 * 184.50004 * 11 9 7 24 24 H 0.97003 * 119.99660 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.60911 * 244.53454 * 12 11 9 26 26 H 1.08992 * 109.61352 * 5.05421 * 12 11 9 27 27 H 1.08996 * 109.73976 * 289.84814 * 13 12 11 28 28 H 1.08999 * 109.67463 * 169.38016 * 13 12 11 29 29 H 1.07999 * 127.02143 * 359.97438 * 18 17 15 30 30 H 1.07994 * 125.43582 * 180.02562 * 19 18 17 31 31 H 1.08012 * 125.79862 * 180.26226 * 21 20 19 32 32 H 1.09003 * 109.60947 * 295.49175 * 22 14 13 33 33 H 1.08992 * 109.75502 * 175.05561 * 22 14 13 34 34 H 1.09001 * 109.61384 * 354.95232 * 23 11 9 35 35 H 1.08996 * 109.60763 * 115.46482 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5715 1.9985 -1.3967 5 1 1.3991 2.6752 0.6152 6 1 3.4942 1.4656 0.7816 7 6 2.0070 -1.2129 -0.0005 8 1 1.4710 -2.1459 0.0922 9 6 3.4652 -1.2159 -0.1269 10 8 4.0590 -0.1771 -0.3483 11 7 4.1499 -2.3703 -0.0036 12 6 3.4405 -3.6462 0.1657 13 6 3.9079 -4.6116 -0.9369 14 7 5.3773 -4.6162 -0.9631 15 6 6.0619 -5.7705 -0.8398 16 8 5.4670 -6.8309 -0.8178 17 6 7.5315 -5.7477 -0.7315 18 6 8.4684 -6.8095 -1.1272 19 6 9.6946 -6.3435 -0.8445 20 8 9.5872 -5.1123 -0.3212 21 6 8.3073 -4.7345 -0.2495 22 6 6.0868 -3.3396 -1.1267 23 6 5.6193 -2.3749 -0.0298 24 1 -0.4850 0.8401 0.0004 25 1 3.6710 -4.0659 1.1448 26 1 2.3665 -3.4820 0.0789 27 1 3.5258 -4.2803 -1.9025 28 1 3.5427 -5.6163 -0.7241 29 1 8.2204 -7.7685 -1.5574 30 1 10.6201 -6.8742 -1.0122 31 1 7.9480 -3.7886 0.1285 32 1 5.8598 -2.9178 -2.1059 33 1 7.1611 -3.5012 -1.0381 34 1 5.9845 -1.3709 -0.2456 35 1 6.0013 -2.7062 0.9357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407961403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:28 Heat of formation + Delta-G solvation = -30.472222 kcal Electronic energy + Delta-G solvation = -21677.453406 eV Core-core repulsion = 18257.254685 eV Total energy + Delta-G solvation = -3420.198722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.78586 -39.94286 -38.25914 -36.23935 -33.69442 -32.96241 -32.81377 -31.41591 -29.86085 -27.78152 -26.40430 -23.98079 -23.32968 -21.74059 -21.63554 -20.28579 -18.95123 -17.70220 -17.00804 -16.56577 -16.23978 -16.08594 -15.52341 -15.07681 -14.95737 -14.81292 -14.30023 -14.06358 -13.49950 -13.26106 -13.05632 -12.52292 -12.46103 -12.30165 -12.18334 -11.93615 -11.27976 -11.21769 -10.93518 -10.87686 -10.51799 -10.07703 -9.88170 -9.39353 -9.11465 -9.02145 -8.78662 -7.88977 -7.59487 -6.69084 -4.94380 1.19635 1.89825 2.67135 2.96813 3.20847 3.38268 3.47071 3.74665 4.06645 4.12351 4.35408 4.44962 4.52714 4.73217 4.99793 5.07937 5.22733 5.29975 5.35344 5.43904 5.47357 5.66598 5.72409 5.82140 5.91294 6.05513 6.06111 6.13317 6.34083 6.58390 6.73997 6.92563 7.41173 7.48136 7.76526 8.17561 8.19644 8.60503 9.01702 9.92046 10.30754 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.004468 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.927158 B = 6265.454688 C = 6942.552268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.099 3.901 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.324 1.324 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.091 0.909 9 C 0.550 3.450 10 O -0.614 6.614 11 N -0.632 5.632 12 C 0.107 3.893 13 C 0.098 3.902 14 N -0.601 5.601 15 C 0.585 3.415 16 O -0.542 6.542 17 C -0.227 4.227 18 C -0.168 4.168 19 C -0.041 4.041 20 O -0.175 6.175 21 C 0.007 3.993 22 C 0.069 3.931 23 C 0.102 3.898 24 H 0.283 0.717 25 H 0.054 0.946 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.208 0.792 31 H 0.223 0.777 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.588 -10.043 -1.173 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.119 4.119 3 Si 0.799 3.201 4 H -0.208 1.208 5 H -0.256 1.256 6 H -0.176 1.176 7 C -0.566 4.566 8 H 0.109 0.891 9 C 0.361 3.639 10 O -0.507 6.507 11 N -0.367 5.367 12 C -0.017 4.017 13 C -0.025 4.025 14 N -0.334 5.334 15 C 0.374 3.626 16 O -0.420 6.420 17 C -0.232 4.232 18 C -0.188 4.188 19 C -0.107 4.107 20 O -0.070 6.070 21 C -0.062 4.062 22 C -0.055 4.055 23 C -0.023 4.023 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.176 0.824 30 H 0.225 0.775 31 H 0.239 0.761 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.589 -9.884 -1.196 18.497 hybrid contribution 0.045 0.410 -0.146 0.438 sum 15.634 -9.474 -1.342 18.330 Atomic orbital electron populations 1.69552 1.08025 1.30187 1.37694 1.25832 0.94807 1.02321 0.88989 0.85241 0.78256 0.76863 0.79758 1.20765 1.25585 1.17616 1.20800 0.88469 0.95626 1.51715 0.89107 1.18376 0.88721 0.80662 0.76173 1.90246 1.70907 1.30803 1.58740 1.47636 1.03774 1.07153 1.78120 1.22027 0.99708 0.83665 0.96325 1.22255 0.78112 1.01565 1.00531 1.47911 1.07494 1.06369 1.71641 1.17332 0.85373 0.83554 0.76316 1.90762 1.70111 1.29929 1.51223 1.21554 0.94417 0.96558 1.10666 1.22772 0.90875 1.00313 1.04795 1.23942 1.00030 0.84364 1.02402 1.83828 1.28318 1.30970 1.63904 1.25046 0.80307 0.99434 1.01414 1.22818 0.97502 0.84013 1.01142 1.21631 0.83963 1.00329 0.96354 0.90682 0.92811 0.86927 0.90789 0.88479 0.82435 0.77542 0.76074 0.90464 0.88406 0.88044 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.81 13.92 55.55 0.77 -22.03 16 2 C 0.10 2.73 5.52 -17.36 -0.10 2.63 16 3 Si 0.97 24.66 26.10 -169.99 -4.44 20.22 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.32 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.25 -6.72 6.14 56.52 0.35 -6.38 16 7 C -0.53 -14.26 9.43 -35.63 -0.34 -14.60 16 8 H 0.09 2.41 5.86 -52.48 -0.31 2.10 16 9 C 0.55 13.79 7.44 -12.99 -0.10 13.70 16 10 O -0.61 -16.71 11.17 5.20 0.06 -16.65 16 11 N -0.63 -12.67 2.94 -173.87 -0.51 -13.18 16 12 C 0.11 1.87 6.51 -3.36 -0.02 1.85 16 13 C 0.10 1.54 6.60 -3.36 -0.02 1.52 16 14 N -0.60 -8.95 2.95 -173.49 -0.51 -9.46 16 15 C 0.59 9.08 7.66 -12.55 -0.10 8.99 16 16 O -0.54 -10.07 16.49 5.27 0.09 -9.98 16 17 C -0.23 -2.88 5.89 -103.28 -0.61 -3.49 16 18 C -0.17 -1.80 11.11 -37.45 -0.42 -2.21 16 19 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 20 O -0.18 -1.70 10.52 7.67 0.08 -1.62 16 21 C 0.01 0.07 9.88 30.07 0.30 0.37 16 22 C 0.07 0.91 5.97 -3.59 -0.02 0.89 16 23 C 0.10 1.62 6.40 -3.60 -0.02 1.60 16 24 H 0.28 7.22 8.29 -40.82 -0.34 6.88 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.11 2.10 5.33 -51.93 -0.28 1.82 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.49 7.03 -51.93 -0.36 1.13 16 29 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.22 1.80 5.78 -52.48 -0.30 1.50 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.10 1.01 3.23 -51.93 -0.17 0.84 16 34 H 0.10 1.72 6.99 -51.93 -0.36 1.36 16 35 H 0.05 0.73 8.07 -51.93 -0.42 0.32 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -33.86 289.98 -4.68 -38.54 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -3.50 Total: -1.46 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -1.09 Total: 11.25 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.25 Total: -44.68 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: 0.23 Total: -28.25 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.44 Total: 20.22 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.86 -4.68 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407961403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.071 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds