Wall clock time and date at job start Tue Mar 31 2020 00:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86798 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47474 * 266.06454 * 3 2 1 5 5 H 1.48493 * 109.47330 * 26.06620 * 3 2 1 6 6 H 1.48502 * 109.46917 * 146.06685 * 3 2 1 7 7 C 1.40048 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99882 * 354.28235 * 7 2 1 9 9 C 1.46371 * 119.99831 * 174.27750 * 7 2 1 10 10 O 1.21685 * 120.00132 * 353.58957 * 9 7 2 11 11 N 1.34784 * 119.99764 * 173.86056 * 9 7 2 12 12 C 1.46963 * 120.59040 * 4.22373 * 11 9 7 13 13 C 1.53823 * 108.39762 * 124.75646 * 12 11 9 14 14 N 1.46969 * 108.57553 * 49.63624 * 13 12 11 15 15 C 1.34770 * 120.59526 * 124.67499 * 14 13 12 16 16 O 1.21613 * 119.99707 * 6.13794 * 15 14 13 17 17 C 1.47375 * 120.00105 * 186.14839 * 15 14 13 18 18 C 1.47029 * 127.19177 * 206.87361 * 17 15 14 19 19 C 1.34179 * 105.95295 * 179.97438 * 18 17 15 20 20 O 1.34217 * 109.12346 * 359.97438 * 19 18 17 21 21 C 1.33645 * 110.90800 * 359.76313 * 20 19 18 22 22 C 1.46963 * 118.81270 * 304.64303 * 14 13 12 23 23 C 1.46961 * 120.59247 * 184.50004 * 11 9 7 24 24 H 0.97003 * 119.99660 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.60911 * 244.53454 * 12 11 9 26 26 H 1.08992 * 109.61352 * 5.05421 * 12 11 9 27 27 H 1.08996 * 109.73976 * 289.84814 * 13 12 11 28 28 H 1.08999 * 109.67463 * 169.38016 * 13 12 11 29 29 H 1.07999 * 127.02143 * 359.97438 * 18 17 15 30 30 H 1.07994 * 125.43582 * 180.02562 * 19 18 17 31 31 H 1.08012 * 125.79862 * 180.26226 * 21 20 19 32 32 H 1.09003 * 109.60947 * 295.49175 * 22 14 13 33 33 H 1.08992 * 109.75502 * 175.05561 * 22 14 13 34 34 H 1.09001 * 109.61384 * 354.95232 * 23 11 9 35 35 H 1.08996 * 109.60763 * 115.46482 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5715 1.9985 -1.3967 5 1 1.3991 2.6752 0.6152 6 1 3.4942 1.4656 0.7816 7 6 2.0070 -1.2129 -0.0005 8 1 1.4710 -2.1459 0.0922 9 6 3.4652 -1.2159 -0.1269 10 8 4.0590 -0.1771 -0.3483 11 7 4.1499 -2.3703 -0.0036 12 6 3.4405 -3.6462 0.1657 13 6 3.9079 -4.6116 -0.9369 14 7 5.3773 -4.6162 -0.9631 15 6 6.0619 -5.7705 -0.8398 16 8 5.4670 -6.8309 -0.8178 17 6 7.5315 -5.7477 -0.7315 18 6 8.4684 -6.8095 -1.1272 19 6 9.6946 -6.3435 -0.8445 20 8 9.5872 -5.1123 -0.3212 21 6 8.3073 -4.7345 -0.2495 22 6 6.0868 -3.3396 -1.1267 23 6 5.6193 -2.3749 -0.0298 24 1 -0.4850 0.8401 0.0004 25 1 3.6710 -4.0659 1.1448 26 1 2.3665 -3.4820 0.0789 27 1 3.5258 -4.2803 -1.9025 28 1 3.5427 -5.6163 -0.7241 29 1 8.2204 -7.7685 -1.5574 30 1 10.6201 -6.8742 -1.0122 31 1 7.9480 -3.7886 0.1285 32 1 5.8598 -2.9178 -2.1059 33 1 7.1611 -3.5012 -1.0381 34 1 5.9845 -1.3709 -0.2456 35 1 6.0013 -2.7062 0.9357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407961403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:28 Heat of formation + Delta-G solvation = -54.642555 kcal Electronic energy + Delta-G solvation = -21678.501511 eV Core-core repulsion = 18257.254685 eV Total energy + Delta-G solvation = -3421.246826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.56834 -41.24470 -39.90913 -37.79758 -35.09357 -35.01010 -33.84803 -32.61890 -30.80386 -29.35437 -28.12649 -25.19001 -24.65766 -22.96665 -22.47874 -21.61779 -20.31121 -18.89722 -18.54472 -18.03904 -17.56644 -17.11395 -16.86911 -16.69078 -16.22528 -15.97506 -15.89438 -15.50706 -14.66912 -14.51849 -14.41462 -14.04374 -14.02387 -13.82178 -13.43210 -13.36554 -12.99953 -12.69411 -12.52881 -12.33818 -12.27484 -11.41837 -11.23070 -11.17738 -10.82832 -10.25225 -9.85117 -9.70758 -9.19551 -8.78278 -7.02786 0.30844 1.13431 1.33391 1.42328 1.66817 1.71496 2.04765 2.09531 2.14977 2.37719 2.66012 3.31314 3.39686 3.71364 3.79486 3.82833 3.97305 4.12301 4.18954 4.36047 4.42088 4.58916 4.62330 4.66407 4.72829 4.83386 4.94253 4.98732 5.11973 5.31236 5.35380 5.66028 5.92294 5.98406 6.17665 6.28041 6.60476 6.98667 7.07557 7.95849 8.26270 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.004468 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.927158 B = 6265.454688 C = 6942.552268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.066 3.934 3 Si 1.013 2.987 4 H -0.291 1.291 5 H -0.308 1.308 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.551 3.449 10 O -0.637 6.637 11 N -0.632 5.632 12 C 0.111 3.889 13 C 0.106 3.894 14 N -0.602 5.602 15 C 0.585 3.415 16 O -0.580 6.580 17 C -0.260 4.260 18 C -0.197 4.197 19 C -0.016 4.016 20 O -0.174 6.174 21 C 0.023 3.977 22 C 0.079 3.921 23 C 0.098 3.902 24 H 0.291 0.709 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.252 0.748 31 H 0.243 0.757 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.289 -10.430 -0.969 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.150 4.150 3 Si 0.845 3.155 4 H -0.218 1.218 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.103 0.897 9 C 0.359 3.641 10 O -0.531 6.531 11 N -0.365 5.365 12 C -0.013 4.013 13 C -0.017 4.017 14 N -0.334 5.334 15 C 0.377 3.623 16 O -0.462 6.462 17 C -0.264 4.264 18 C -0.216 4.216 19 C -0.081 4.081 20 O -0.068 6.068 21 C -0.047 4.047 22 C -0.043 4.043 23 C -0.026 4.026 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.176 0.824 30 H 0.267 0.733 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.111 0.889 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.305 -10.289 -0.987 21.022 hybrid contribution -0.693 0.418 -0.202 0.834 sum 17.612 -9.871 -1.189 20.225 Atomic orbital electron populations 1.69567 1.08501 1.31145 1.38878 1.26341 0.95324 1.04146 0.89150 0.84561 0.76763 0.75483 0.78686 1.21776 1.23881 1.19696 1.21065 0.89915 0.95512 1.52234 0.89689 1.18206 0.88392 0.81714 0.75784 1.90219 1.71284 1.32092 1.59550 1.47560 1.05809 1.06516 1.76644 1.22041 0.98706 0.82875 0.97708 1.22058 0.79131 1.01016 0.99514 1.47950 1.07040 1.06975 1.71449 1.17746 0.86592 0.82847 0.75151 1.90735 1.71181 1.31219 1.53050 1.21490 0.92973 0.98680 1.13300 1.22949 0.91580 1.00552 1.06564 1.24697 1.00707 0.83289 0.99428 1.83876 1.27747 1.31584 1.63602 1.25242 0.80220 0.99287 0.99946 1.22822 0.99261 0.82513 0.99751 1.21909 0.81103 1.00846 0.98724 0.89849 0.91410 0.88580 0.91269 0.88200 0.82406 0.73265 0.74192 0.91081 0.84892 0.88854 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.27 13.92 21.84 0.30 -46.97 16 2 C 0.07 3.67 5.52 85.30 0.47 4.14 16 3 Si 1.01 50.97 26.10 68.60 1.79 52.76 16 4 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -14.38 6.14 99.48 0.61 -13.77 16 7 C -0.55 -29.99 9.43 24.83 0.23 -29.76 16 8 H 0.09 4.62 5.86 -2.91 -0.02 4.60 16 9 C 0.55 27.56 7.44 86.36 0.64 28.21 16 10 O -0.64 -34.46 11.17 -4.30 -0.05 -34.51 16 11 N -0.63 -24.79 2.94 -822.23 -2.42 -27.20 16 12 C 0.11 3.80 6.51 86.57 0.56 4.36 16 13 C 0.11 3.28 6.60 86.57 0.57 3.85 16 14 N -0.60 -17.06 2.95 -821.06 -2.42 -19.48 16 15 C 0.59 17.48 7.66 86.65 0.66 18.14 16 16 O -0.58 -21.47 16.49 -4.07 -0.07 -21.53 16 17 C -0.26 -6.01 5.89 -18.99 -0.11 -6.12 16 18 C -0.20 -3.76 11.11 23.65 0.26 -3.50 16 19 C -0.02 -0.20 12.03 66.89 0.80 0.61 16 20 O -0.17 -2.65 10.52 4.51 0.05 -2.60 16 21 C 0.02 0.38 9.88 67.39 0.67 1.05 16 22 C 0.08 1.92 5.97 86.42 0.52 2.43 16 23 C 0.10 2.89 6.40 86.42 0.55 3.45 16 24 H 0.29 14.84 8.29 -92.71 -0.77 14.08 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 3.65 5.33 -2.39 -0.01 3.63 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 3.06 7.03 -2.39 -0.02 3.04 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.24 2.89 5.78 -2.90 -0.02 2.87 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.13 2.29 3.23 -2.39 -0.01 2.29 16 34 H 0.09 2.99 6.99 -2.39 -0.02 2.98 16 35 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 Total: -1.00 -73.35 289.98 4.07 -69.28 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.04 Total: 3.40 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 5.84 Total: 26.85 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -4.53 Total: -93.65 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.07 Total: -58.64 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.79 Total: 52.76 kcal Total: -73.35 4.07 -69.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407961403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.637 kcal (2) G-P(sol) polarization free energy of solvation -73.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds