Wall clock time and date at job start Tue Mar 31 2020 01:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34863 * 120.32844 * 2 1 4 4 N 1.35588 * 121.79632 * 179.97438 * 3 2 1 5 5 H 0.97000 * 118.80185 * 180.02562 * 4 3 2 6 6 C 1.34346 * 122.39091 * 359.76823 * 4 3 2 7 7 C 1.37990 * 120.36883 * 0.49645 * 6 4 3 8 8 C 1.47293 * 120.87733 * 179.78287 * 7 6 4 9 9 O 1.21618 * 119.99730 * 155.55209 * 8 7 6 10 10 N 1.34773 * 119.99963 * 335.54366 * 8 7 6 11 11 C 1.47580 * 134.48748 * 174.56879 * 10 8 7 12 12 C 1.53953 * 86.11527 * 155.36719 * 11 10 8 13 13 O 1.42900 * 113.73628 * 269.15869 * 12 11 10 14 14 C 1.50692 * 113.74225 * 137.95488 * 12 11 10 15 15 H 1.08003 * 120.00490 * 1.92121 * 14 12 11 16 16 C 1.37877 * 119.99770 * 181.92427 * 14 12 11 17 17 N 1.31512 * 120.00105 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99924 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47233 * 269.99606 * 18 16 14 20 20 H 1.48500 * 109.47122 * 30.00090 * 18 16 14 21 21 H 1.48507 * 109.46946 * 150.00137 * 18 16 14 22 22 C 1.47804 * 134.45936 * 354.44708 * 10 8 7 23 23 C 1.41669 * 120.32846 * 179.97438 * 2 1 3 24 24 O 1.22084 * 121.06887 * 0.04816 * 23 2 1 25 25 H 1.09005 * 109.47449 * 270.02364 * 1 2 3 26 26 H 1.09001 * 109.47068 * 30.02736 * 1 2 3 27 27 H 1.09002 * 109.47172 * 150.02560 * 1 2 3 28 28 H 1.07989 * 119.10343 * 359.97324 * 3 2 1 29 29 H 1.08001 * 119.81362 * 180.27333 * 6 4 3 30 30 H 1.08995 * 113.77060 * 41.06435 * 11 10 8 31 31 H 1.09005 * 113.87342 * 269.67635 * 11 10 8 32 32 H 0.96701 * 113.99939 * 178.07785 * 13 12 11 33 33 H 0.97009 * 119.99997 * 179.97438 * 17 16 14 34 34 H 1.09002 * 113.77132 * 90.37331 * 22 10 8 35 35 H 1.09005 * 113.83894 * 318.91040 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1641 0.0000 4 7 3.5434 1.1988 0.0005 5 1 3.9888 2.0605 0.0009 6 6 4.2919 0.0832 0.0056 7 6 3.6920 -1.1595 0.0003 8 6 4.5017 -2.3898 0.0011 9 8 4.0333 -3.4258 0.4327 10 7 5.7617 -2.3675 -0.4767 11 6 6.8623 -3.3489 -0.5373 12 6 7.3793 -2.5380 -1.7395 13 8 6.8782 -2.9925 -2.9982 14 6 8.8729 -2.3381 -1.7392 15 1 9.4764 -2.7763 -0.9580 16 6 9.4692 -1.5957 -2.7364 17 7 8.7345 -1.0624 -3.6879 18 14 11.3207 -1.3472 -2.7357 19 1 11.6555 -0.1224 -1.9659 20 1 11.9775 -2.5217 -2.1077 21 1 11.8008 -1.2001 -4.1333 22 6 6.5949 -1.3507 -1.1523 23 6 2.2223 -1.2228 0.0005 24 8 1.6379 -2.2947 0.0001 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6388 2.0939 -0.0004 29 1 5.3692 0.1594 0.0103 30 1 6.5381 -4.3573 -0.7943 31 1 7.5249 -3.3227 0.3279 32 1 7.1773 -2.4677 -3.7533 33 1 9.1540 -0.5398 -4.3893 34 1 7.1777 -0.7346 -0.4676 35 1 6.0576 -0.7666 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408157844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:36 Heat of formation + Delta-G solvation = -48.899382 kcal Electronic energy + Delta-G solvation = -21625.325640 eV Core-core repulsion = 18204.327857 eV Total energy + Delta-G solvation = -3420.997783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83258 -39.19248 -37.68662 -36.82180 -33.93693 -33.35722 -32.25279 -31.46948 -28.34507 -27.41260 -25.53491 -25.35312 -23.33896 -22.81134 -20.15723 -19.18670 -17.92068 -17.58216 -17.21560 -16.52851 -15.68876 -15.43181 -15.08737 -14.83221 -14.32513 -14.19197 -13.79135 -13.39688 -13.18309 -13.04337 -12.76669 -12.60764 -12.35082 -12.16972 -11.96102 -11.88149 -11.58796 -11.13392 -11.05190 -10.56350 -10.31802 -9.70447 -9.45621 -9.33458 -8.97274 -8.79006 -8.39379 -7.94387 -7.70517 -6.42967 -4.53619 1.00162 1.39217 2.72928 3.09845 3.19372 3.23027 3.37507 3.54720 4.10052 4.14819 4.32839 4.61747 4.77704 4.84775 4.93845 5.25325 5.38100 5.51979 5.63356 5.65799 5.91661 5.93933 6.12709 6.16777 6.29316 6.40393 6.41881 6.63817 6.69493 6.76062 6.85917 7.08381 7.59090 7.80069 8.30451 8.50357 8.55587 8.95938 9.18191 9.42826 10.63296 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.004721 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.417309 B = 5929.213913 C = 6468.509841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.242 4.242 3 C 0.119 3.881 4 N -0.580 5.580 5 H 0.422 0.578 6 C 0.163 3.837 7 C -0.284 4.284 8 C 0.588 3.412 9 O -0.537 6.537 10 N -0.637 5.637 11 C 0.114 3.886 12 C 0.240 3.760 13 O -0.570 6.570 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.270 1.270 21 H -0.284 1.284 22 C 0.070 3.930 23 C 0.412 3.588 24 O -0.482 6.482 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.174 0.826 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.391 0.609 33 H 0.272 0.728 34 H 0.080 0.920 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 12.742 5.326 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.248 4.248 3 C -0.007 4.007 4 N -0.185 5.185 5 H 0.258 0.742 6 C 0.032 3.968 7 C -0.295 4.295 8 C 0.378 3.622 9 O -0.414 6.414 10 N -0.372 5.372 11 C -0.008 4.008 12 C 0.199 3.801 13 O -0.381 6.381 14 C -0.575 4.575 15 H 0.090 0.910 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.195 1.195 21 H -0.209 1.209 22 C -0.053 4.053 23 C 0.297 3.703 24 O -0.363 6.363 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.191 0.809 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.245 0.755 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.140 11.234 5.823 15.046 hybrid contribution 1.599 1.348 -0.432 2.135 sum -6.541 12.582 5.391 15.171 Atomic orbital electron populations 1.20348 0.89023 1.02819 1.02152 1.21086 0.98214 0.93462 1.12078 1.21483 0.82613 0.99951 0.96621 1.40693 1.05778 1.09464 1.62593 0.74247 1.22549 0.97605 0.85589 0.91034 1.22493 0.96909 0.92545 1.17527 1.17108 0.80085 0.87292 0.77743 1.90768 1.70624 1.32148 1.47893 1.50117 1.10282 1.18381 1.58396 1.23412 0.84695 0.94701 0.97989 1.19823 0.90906 0.87295 0.82111 1.86102 1.75106 1.59642 1.17284 1.21539 0.91561 1.33007 1.11375 0.91004 1.25064 0.99295 0.94021 0.94617 1.69414 1.36172 1.34644 1.13666 0.86354 0.83983 0.78748 0.77563 1.20395 1.19502 1.20922 1.24363 0.90776 0.95631 0.94534 1.18091 0.86793 0.89107 0.76285 1.90777 1.71283 1.31920 1.42277 0.91567 0.91940 0.90693 0.81958 0.80925 0.91051 0.89631 0.75504 0.91735 0.90192 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.83 36.00 0.35 -0.57 16 2 C -0.24 -3.16 5.89 -104.51 -0.62 -3.78 16 3 C 0.12 1.01 10.73 -17.09 -0.18 0.82 16 4 N -0.58 -4.69 5.16 -12.74 -0.07 -4.76 16 5 H 0.42 1.51 8.88 -40.82 -0.36 1.15 16 6 C 0.16 2.07 10.05 -16.54 -0.17 1.90 16 7 C -0.28 -5.27 5.99 -102.71 -0.62 -5.88 16 8 C 0.59 13.47 7.80 -12.58 -0.10 13.37 16 9 O -0.54 -14.51 16.65 -12.38 -0.21 -14.72 16 10 N -0.64 -13.79 3.58 -179.43 -0.64 -14.43 16 11 C 0.11 2.52 8.23 -2.96 -0.02 2.50 16 12 C 0.24 5.67 1.40 -90.85 -0.13 5.54 16 13 O -0.57 -14.77 13.48 -35.23 -0.48 -15.25 16 14 C -0.54 -13.03 8.61 -34.44 -0.30 -13.32 16 15 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 16 C 0.07 1.74 5.40 -17.82 -0.10 1.64 16 17 N -0.90 -21.90 11.20 55.43 0.62 -21.28 16 18 Si 0.91 18.75 29.54 -169.99 -5.02 13.73 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 C 0.07 1.40 5.70 -2.84 -0.02 1.39 16 23 C 0.41 7.85 6.92 -34.68 -0.24 7.61 16 24 O -0.48 -11.40 15.90 -12.80 -0.20 -11.60 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 28 H 0.16 0.60 8.05 -52.49 -0.42 0.18 16 29 H 0.17 1.98 5.57 -52.49 -0.29 1.68 16 30 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 32 H 0.39 10.07 6.60 45.56 0.30 10.37 16 33 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 35 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 LS Contribution 304.36 15.07 4.59 4.59 Total: -1.00 -35.77 304.36 -6.75 -42.52 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.22 Total: 9.98 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -2.13 Total: 11.21 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.88 Total: -41.57 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.77 -6.75 -42.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.380 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds