Wall clock time and date at job start Tue Mar 31 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34863 * 120.32844 * 2 1 4 4 N 1.35588 * 121.79632 * 179.97438 * 3 2 1 5 5 H 0.97000 * 118.80185 * 180.02562 * 4 3 2 6 6 C 1.34346 * 122.39091 * 359.76823 * 4 3 2 7 7 C 1.37990 * 120.36883 * 0.49645 * 6 4 3 8 8 C 1.47293 * 120.87733 * 179.78287 * 7 6 4 9 9 O 1.21618 * 119.99730 * 155.55209 * 8 7 6 10 10 N 1.34773 * 119.99963 * 335.54366 * 8 7 6 11 11 C 1.47580 * 134.48748 * 174.56879 * 10 8 7 12 12 C 1.53953 * 86.11527 * 155.36719 * 11 10 8 13 13 O 1.42900 * 113.73628 * 269.15869 * 12 11 10 14 14 C 1.50692 * 113.74225 * 137.95488 * 12 11 10 15 15 H 1.08003 * 120.00490 * 1.92121 * 14 12 11 16 16 C 1.37877 * 119.99770 * 181.92427 * 14 12 11 17 17 N 1.31512 * 120.00105 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99924 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47233 * 269.99606 * 18 16 14 20 20 H 1.48500 * 109.47122 * 30.00090 * 18 16 14 21 21 H 1.48507 * 109.46946 * 150.00137 * 18 16 14 22 22 C 1.47804 * 134.45936 * 354.44708 * 10 8 7 23 23 C 1.41669 * 120.32846 * 179.97438 * 2 1 3 24 24 O 1.22084 * 121.06887 * 0.04816 * 23 2 1 25 25 H 1.09005 * 109.47449 * 270.02364 * 1 2 3 26 26 H 1.09001 * 109.47068 * 30.02736 * 1 2 3 27 27 H 1.09002 * 109.47172 * 150.02560 * 1 2 3 28 28 H 1.07989 * 119.10343 * 359.97324 * 3 2 1 29 29 H 1.08001 * 119.81362 * 180.27333 * 6 4 3 30 30 H 1.08995 * 113.77060 * 41.06435 * 11 10 8 31 31 H 1.09005 * 113.87342 * 269.67635 * 11 10 8 32 32 H 0.96701 * 113.99939 * 178.07785 * 13 12 11 33 33 H 0.97009 * 119.99997 * 179.97438 * 17 16 14 34 34 H 1.09002 * 113.77132 * 90.37331 * 22 10 8 35 35 H 1.09005 * 113.83894 * 318.91040 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1641 0.0000 4 7 3.5434 1.1988 0.0005 5 1 3.9888 2.0605 0.0009 6 6 4.2919 0.0832 0.0056 7 6 3.6920 -1.1595 0.0003 8 6 4.5017 -2.3898 0.0011 9 8 4.0333 -3.4258 0.4327 10 7 5.7617 -2.3675 -0.4767 11 6 6.8623 -3.3489 -0.5373 12 6 7.3793 -2.5380 -1.7395 13 8 6.8782 -2.9925 -2.9982 14 6 8.8729 -2.3381 -1.7392 15 1 9.4764 -2.7763 -0.9580 16 6 9.4692 -1.5957 -2.7364 17 7 8.7345 -1.0624 -3.6879 18 14 11.3207 -1.3472 -2.7357 19 1 11.6555 -0.1224 -1.9659 20 1 11.9775 -2.5217 -2.1077 21 1 11.8008 -1.2001 -4.1333 22 6 6.5949 -1.3507 -1.1523 23 6 2.2223 -1.2228 0.0005 24 8 1.6379 -2.2947 0.0001 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6388 2.0939 -0.0004 29 1 5.3692 0.1594 0.0103 30 1 6.5381 -4.3573 -0.7943 31 1 7.5249 -3.3227 0.3279 32 1 7.1773 -2.4677 -3.7533 33 1 9.1540 -0.5398 -4.3893 34 1 7.1777 -0.7346 -0.4676 35 1 6.0576 -0.7666 -1.8995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408157844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:35 Heat of formation + Delta-G solvation = -77.941294 kcal Electronic energy + Delta-G solvation = -21626.584992 eV Core-core repulsion = 18204.327857 eV Total energy + Delta-G solvation = -3422.257135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.00173 -40.83082 -39.10154 -38.47511 -35.81961 -34.36672 -34.14112 -32.79476 -30.06051 -28.33100 -27.26933 -27.04825 -24.63023 -23.92497 -21.79332 -20.52578 -19.43084 -19.00264 -18.61488 -17.84789 -17.20812 -17.12670 -16.54262 -16.40453 -15.95745 -15.80482 -15.05129 -14.83276 -14.36546 -14.26102 -14.20514 -13.94749 -13.77184 -13.60837 -13.43640 -13.35663 -12.85935 -12.82758 -12.72224 -12.25169 -12.20489 -11.46827 -11.04152 -10.65631 -10.51304 -10.43484 -10.18314 -9.56448 -9.02460 -8.24182 -6.41519 -0.14939 0.38643 1.48465 1.53923 1.62039 1.81463 1.84884 1.99133 2.43009 2.74431 2.98555 3.31552 3.53981 3.76288 3.89166 3.95091 4.14139 4.18112 4.41683 4.51842 4.61296 4.70778 4.76450 4.87448 4.88697 4.91254 5.02964 5.22396 5.29353 5.42915 5.68417 5.74503 5.95603 6.16834 6.64460 6.85760 7.07421 7.25259 7.32719 7.46701 8.81829 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.004721 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.417309 B = 5929.213913 C = 6468.509841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.275 4.275 3 C 0.166 3.834 4 N -0.545 5.545 5 H 0.454 0.546 6 C 0.215 3.785 7 C -0.348 4.348 8 C 0.578 3.422 9 O -0.599 6.599 10 N -0.637 5.637 11 C 0.107 3.893 12 C 0.219 3.781 13 O -0.591 6.591 14 C -0.555 4.555 15 H 0.072 0.928 16 C 0.038 3.962 17 N -0.915 5.915 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.287 1.287 22 C 0.090 3.910 23 C 0.385 3.615 24 O -0.566 6.566 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.037 0.963 28 H 0.236 0.764 29 H 0.194 0.806 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.387 0.613 33 H 0.276 0.724 34 H 0.113 0.887 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 18.073 5.664 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.281 4.281 3 C 0.039 3.961 4 N -0.150 5.150 5 H 0.297 0.703 6 C 0.079 3.921 7 C -0.359 4.359 8 C 0.371 3.629 9 O -0.482 6.482 10 N -0.371 5.371 11 C -0.015 4.015 12 C 0.178 3.822 13 O -0.403 6.403 14 C -0.593 4.593 15 H 0.090 0.910 16 C -0.163 4.163 17 N -0.555 5.555 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.212 1.212 22 C -0.031 4.031 23 C 0.278 3.722 24 O -0.454 6.454 25 H 0.089 0.911 26 H 0.126 0.874 27 H 0.056 0.944 28 H 0.252 0.748 29 H 0.211 0.789 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.241 0.759 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.124 16.685 6.159 19.159 hybrid contribution 1.369 -0.158 -0.571 1.492 sum -5.755 16.526 5.587 18.370 Atomic orbital electron populations 1.20355 0.87733 1.03138 1.02640 1.21089 0.99421 0.92425 1.15154 1.22351 0.82236 1.00793 0.90676 1.40973 1.06127 1.09625 1.58257 0.70328 1.22568 0.98543 0.84851 0.86142 1.22164 0.96694 0.92897 1.24125 1.17894 0.80176 0.88311 0.76558 1.90708 1.71772 1.34899 1.50806 1.50166 1.10149 1.18583 1.58199 1.23511 0.85537 0.93743 0.98718 1.20149 0.91496 0.89298 0.81297 1.86099 1.75511 1.60382 1.18297 1.21688 0.91874 1.33681 1.12056 0.90980 1.25682 1.02853 0.93598 0.94121 1.69467 1.37499 1.34661 1.13863 0.85410 0.79331 0.78730 0.77249 1.19017 1.20090 1.21231 1.24279 0.89717 0.94490 0.94635 1.18954 0.87443 0.90463 0.75327 1.90724 1.72453 1.34775 1.47474 0.91081 0.87443 0.94431 0.74769 0.78927 0.93594 0.87289 0.75854 0.91418 0.86943 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.83 71.23 0.70 -0.92 16 2 C -0.28 -6.63 5.89 -19.79 -0.12 -6.75 16 3 C 0.17 1.74 10.73 83.34 0.89 2.64 16 4 N -0.54 -5.24 5.16 -194.22 -1.00 -6.25 16 5 H 0.45 -0.62 8.88 -92.71 -0.82 -1.44 16 6 C 0.21 4.66 10.05 84.25 0.85 5.51 16 7 C -0.35 -13.04 5.99 -18.63 -0.11 -13.15 16 8 C 0.58 27.86 7.80 86.63 0.68 28.53 16 9 O -0.60 -35.29 16.65 12.78 0.21 -35.08 16 10 N -0.64 -28.14 3.58 -843.67 -3.02 -31.16 16 11 C 0.11 4.90 8.23 86.49 0.71 5.62 16 12 C 0.22 10.34 1.40 -10.88 -0.02 10.33 16 13 O -0.59 -31.46 13.48 -148.98 -2.01 -33.47 16 14 C -0.56 -26.52 8.61 25.60 0.22 -26.30 16 15 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16 16 C 0.04 1.78 5.40 84.65 0.46 2.24 16 17 N -0.91 -43.41 11.20 21.45 0.24 -43.17 16 18 Si 0.97 37.16 29.54 68.60 2.03 39.19 16 19 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.29 -11.08 7.11 99.48 0.71 -10.37 16 22 C 0.09 3.50 5.70 86.44 0.49 4.00 16 23 C 0.39 15.36 6.92 25.44 0.18 15.53 16 24 O -0.57 -29.58 15.90 11.28 0.18 -29.40 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 26 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 27 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 28 H 0.24 -0.64 8.05 -2.92 -0.02 -0.67 16 29 H 0.19 3.48 5.57 -2.91 -0.02 3.46 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.11 4.37 8.09 -2.38 -0.02 4.36 16 32 H 0.39 20.36 6.60 -74.06 -0.49 19.87 16 33 H 0.28 12.38 8.31 -92.70 -0.77 11.61 16 34 H 0.11 3.62 7.74 -2.39 -0.02 3.61 16 35 H 0.07 2.76 7.87 -2.38 -0.02 2.74 16 Total: -1.00 -90.31 304.36 1.40 -88.91 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.16 Total: 23.16 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 4.93 Total: 27.27 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.78 Total: -80.57 kcal Atomic # 8 Polarization: -96.33 SS G_CDS: -1.62 Total: -97.95 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -90.31 1.40 -88.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.970 kcal (2) G-P(sol) polarization free energy of solvation -90.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds