Wall clock time and date at job start Tue Mar 31 2020 01:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38026 * 119.51433 * 2 1 4 4 C 1.39919 * 119.13188 * 180.02562 * 3 2 1 5 5 C 1.48164 * 120.89059 * 179.97438 * 4 3 2 6 6 O 1.21505 * 120.00305 * 353.37562 * 5 4 3 7 7 N 1.34782 * 120.00268 * 173.37509 * 5 4 3 8 8 C 1.47582 * 134.49765 * 174.50568 * 7 5 4 9 9 C 1.53947 * 86.11848 * 155.35942 * 8 7 5 10 10 O 1.42892 * 113.74216 * 269.15713 * 9 8 7 11 11 C 1.50694 * 113.73868 * 137.95224 * 9 8 7 12 12 H 1.08005 * 120.00291 * 1.92468 * 11 9 8 13 13 C 1.37879 * 119.99638 * 181.92394 * 11 9 8 14 14 N 1.31522 * 120.00005 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 120.00151 * 0.02562 * 13 11 9 16 16 H 1.48507 * 109.46907 * 269.99392 * 15 13 11 17 17 H 1.48489 * 109.47379 * 29.99650 * 15 13 11 18 18 H 1.48502 * 109.47057 * 150.00067 * 15 13 11 19 19 C 1.47816 * 134.45258 * 354.37779 * 7 5 4 20 20 C 1.39617 * 118.22270 * 0.24943 * 4 3 2 21 21 C 1.38853 * 118.93898 * 359.50794 * 20 4 3 22 22 O 1.35695 * 119.61672 * 180.24863 * 21 20 4 23 23 N 1.31881 * 119.51588 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47341 * 89.99876 * 1 2 3 25 25 H 1.08996 * 109.47357 * 210.00334 * 1 2 3 26 26 H 1.09010 * 109.47096 * 330.00050 * 1 2 3 27 27 H 1.07998 * 120.43216 * 0.04548 * 3 2 1 28 28 H 1.08996 * 113.76501 * 41.05801 * 8 7 5 29 29 H 1.08996 * 113.86985 * 269.67750 * 8 7 5 30 30 H 0.96703 * 114.00375 * 178.07510 * 10 9 8 31 31 H 0.96992 * 120.00378 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.77116 * 90.37714 * 19 7 5 33 33 H 1.09005 * 113.83285 * 318.91022 * 19 7 5 34 34 H 1.07992 * 120.53489 * 179.74874 * 20 4 3 35 35 H 0.96701 * 113.99893 * 270.25455 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.2011 0.0000 4 6 3.5861 1.1918 -0.0005 5 6 4.3552 2.4582 -0.0011 6 8 3.7772 3.5200 -0.1225 7 7 5.6961 2.4324 0.1330 8 6 6.7613 3.4522 0.0751 9 6 7.5821 2.4943 0.9574 10 8 7.4162 2.7184 2.3589 11 6 9.0278 2.3806 0.5476 12 1 9.4031 2.9682 -0.2772 13 6 9.8714 1.5265 1.2257 14 7 11.1330 1.4269 0.8678 15 14 9.2221 0.5097 2.6519 16 1 9.3821 1.2718 3.9164 17 1 7.7843 0.2108 2.4326 18 1 9.9842 -0.7618 2.7406 19 6 6.6896 1.3708 0.3995 20 6 4.2381 -0.0427 -0.0064 21 6 3.4774 -1.2044 -0.0010 22 8 4.0969 -2.4116 -0.0015 23 7 2.1567 -1.1476 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5139 27 1 1.6461 2.1359 0.0007 28 1 6.5001 4.3886 0.5682 29 1 7.1785 3.5982 -0.9212 30 1 7.9072 2.0999 2.9170 31 1 11.7266 0.8263 1.3450 32 1 7.0847 0.9025 -0.5019 33 1 6.3713 0.6484 1.1513 34 1 5.3168 -0.0935 -0.0111 35 1 4.2762 -2.7614 -0.8851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408161083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:28 Heat of formation + Delta-G solvation = -29.067130 kcal Electronic energy + Delta-G solvation = -21620.585233 eV Core-core repulsion = 18200.447441 eV Total energy + Delta-G solvation = -3420.137792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89293 -39.68367 -37.89157 -37.13601 -34.65370 -33.18941 -32.62808 -31.69832 -29.11829 -27.71340 -26.11311 -25.61973 -23.63128 -22.82397 -20.37099 -19.39233 -18.34646 -17.55491 -17.18860 -16.75477 -16.25507 -15.90207 -15.59179 -15.11963 -14.92453 -14.14417 -13.87055 -13.72045 -13.54690 -13.22146 -12.88286 -12.55611 -12.53716 -12.34164 -12.24641 -12.01116 -11.81741 -11.34486 -11.04422 -10.70007 -10.21715 -10.20027 -9.93797 -9.61689 -9.44851 -9.10879 -8.94730 -8.75839 -8.22552 -6.49962 -4.57339 0.64333 0.83590 2.90826 2.94186 2.95879 3.06484 3.12174 3.38680 3.72053 3.96132 4.32882 4.38870 4.60213 4.84399 4.89265 4.98709 5.11279 5.28234 5.36319 5.39493 5.44929 5.67075 5.80775 5.84171 5.89921 5.99379 6.05869 6.21618 6.26255 6.35251 6.46595 7.10107 7.32693 7.73374 7.94129 8.02677 8.32913 8.41782 8.53644 9.06952 10.61944 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.005622 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.203620 B = 4979.292836 C = 5800.296842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.143 3.857 3 C -0.129 4.129 4 C -0.056 4.056 5 C 0.571 3.429 6 O -0.545 6.545 7 N -0.624 5.624 8 C 0.129 3.871 9 C 0.198 3.802 10 O -0.553 6.553 11 C -0.539 4.539 12 H 0.093 0.907 13 C 0.083 3.917 14 N -0.873 5.873 15 Si 0.855 3.145 16 H -0.266 1.266 17 H -0.256 1.256 18 H -0.281 1.281 19 C 0.052 3.948 20 C -0.171 4.171 21 C 0.310 3.690 22 O -0.478 6.478 23 N -0.494 5.494 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.354 0.646 31 H 0.272 0.728 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 -5.467 -2.804 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.005 3.995 3 C -0.150 4.150 4 C -0.067 4.067 5 C 0.360 3.640 6 O -0.425 6.425 7 N -0.357 5.357 8 C 0.008 3.992 9 C 0.156 3.844 10 O -0.363 6.363 11 C -0.577 4.577 12 H 0.111 0.889 13 C -0.123 4.123 14 N -0.508 5.508 15 Si 0.683 3.317 16 H -0.192 1.192 17 H -0.182 1.182 18 H -0.207 1.207 19 C -0.071 4.071 20 C -0.192 4.192 21 C 0.132 3.868 22 O -0.285 6.285 23 N -0.214 5.214 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.168 0.832 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.205 0.795 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.176 0.824 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -15.202 -5.255 -2.467 16.273 hybrid contribution 0.819 -0.635 0.481 1.142 sum -14.384 -5.890 -1.986 15.669 Atomic orbital electron populations 1.20743 0.87978 1.03829 1.03391 1.20972 0.96948 0.86677 0.94882 1.22097 0.93204 1.00078 0.99585 1.20368 0.94164 0.93496 0.98649 1.17693 0.80935 0.87881 0.77467 1.90730 1.68901 1.31191 1.51633 1.50062 1.03389 1.14280 1.67924 1.23371 0.82260 0.93630 0.99931 1.20532 0.94000 0.90279 0.79539 1.86472 1.73323 1.59132 1.17397 1.21203 0.90922 1.26460 1.19071 0.88917 1.24991 0.94749 0.95939 0.96640 1.69846 1.04165 1.36617 1.40213 0.87396 0.79863 0.80884 0.83572 1.19187 1.18151 1.20723 1.24936 0.86810 0.94402 1.00911 1.22942 1.03330 0.91511 1.01410 1.18964 0.86636 0.85243 0.96001 1.84813 1.77003 1.32719 1.33982 1.66806 1.10113 1.30885 1.13628 0.90072 0.90234 0.90200 0.83172 0.90158 0.88227 0.79451 0.91763 0.88098 0.90520 0.82383 0.74157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.16 36.00 0.37 -0.52 16 2 C 0.14 1.82 6.78 -82.65 -0.56 1.26 16 3 C -0.13 -1.81 9.30 -39.03 -0.36 -2.17 16 4 C -0.06 -0.91 5.91 -104.68 -0.62 -1.53 16 5 C 0.57 10.95 8.01 -12.18 -0.10 10.85 16 6 O -0.55 -11.63 17.20 5.36 0.09 -11.53 16 7 N -0.62 -12.07 3.60 -179.09 -0.64 -12.72 16 8 C 0.13 2.56 8.23 -2.97 -0.02 2.54 16 9 C 0.20 4.31 1.06 -90.85 -0.10 4.22 16 10 O -0.55 -12.67 13.35 -35.23 -0.47 -13.14 16 11 C -0.54 -13.34 9.19 -34.44 -0.32 -13.65 16 12 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 13 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.87 -23.72 13.96 55.43 0.77 -22.95 16 15 Si 0.85 18.33 24.31 -169.99 -4.13 14.20 16 16 H -0.27 -5.60 7.05 56.52 0.40 -5.20 16 17 H -0.26 -5.14 5.16 56.52 0.29 -4.85 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.05 0.99 4.73 -2.83 -0.01 0.97 16 20 C -0.17 -2.59 9.10 -38.84 -0.35 -2.94 16 21 C 0.31 4.46 7.74 -17.17 -0.13 4.33 16 22 O -0.48 -5.96 13.56 -18.79 -0.25 -6.22 16 23 N -0.49 -7.07 10.27 -9.59 -0.10 -7.17 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.56 8.07 -51.92 -0.42 0.14 16 27 H 0.15 1.93 7.75 -52.49 -0.41 1.52 16 28 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.80 8.09 -51.93 -0.42 1.38 16 30 H 0.35 7.74 3.57 45.56 0.16 7.90 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 1.76 8.02 -51.93 -0.42 1.34 16 33 H 0.08 1.43 5.61 -51.93 -0.29 1.14 16 34 H 0.16 2.37 4.28 -52.49 -0.22 2.15 16 35 H 0.40 2.84 9.06 45.56 0.41 3.25 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -31.30 296.47 -5.12 -36.41 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -2.54 Total: 13.29 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.31 Total: 5.35 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.03 Total: -42.83 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.63 Total: -30.89 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.13 Total: 14.20 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.30 -5.12 -36.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408161083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.347 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds