Wall clock time and date at job start Tue Mar 31 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38026 * 119.51433 * 2 1 4 4 C 1.39919 * 119.13188 * 180.02562 * 3 2 1 5 5 C 1.48164 * 120.89059 * 179.97438 * 4 3 2 6 6 O 1.21505 * 120.00305 * 353.37562 * 5 4 3 7 7 N 1.34782 * 120.00268 * 173.37509 * 5 4 3 8 8 C 1.47582 * 134.49765 * 174.50568 * 7 5 4 9 9 C 1.53947 * 86.11848 * 155.35942 * 8 7 5 10 10 O 1.42892 * 113.74216 * 269.15713 * 9 8 7 11 11 C 1.50694 * 113.73868 * 137.95224 * 9 8 7 12 12 H 1.08005 * 120.00291 * 1.92468 * 11 9 8 13 13 C 1.37879 * 119.99638 * 181.92394 * 11 9 8 14 14 N 1.31522 * 120.00005 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 120.00151 * 0.02562 * 13 11 9 16 16 H 1.48507 * 109.46907 * 269.99392 * 15 13 11 17 17 H 1.48489 * 109.47379 * 29.99650 * 15 13 11 18 18 H 1.48502 * 109.47057 * 150.00067 * 15 13 11 19 19 C 1.47816 * 134.45258 * 354.37779 * 7 5 4 20 20 C 1.39617 * 118.22270 * 0.24943 * 4 3 2 21 21 C 1.38853 * 118.93898 * 359.50794 * 20 4 3 22 22 O 1.35695 * 119.61672 * 180.24863 * 21 20 4 23 23 N 1.31881 * 119.51588 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47341 * 89.99876 * 1 2 3 25 25 H 1.08996 * 109.47357 * 210.00334 * 1 2 3 26 26 H 1.09010 * 109.47096 * 330.00050 * 1 2 3 27 27 H 1.07998 * 120.43216 * 0.04548 * 3 2 1 28 28 H 1.08996 * 113.76501 * 41.05801 * 8 7 5 29 29 H 1.08996 * 113.86985 * 269.67750 * 8 7 5 30 30 H 0.96703 * 114.00375 * 178.07510 * 10 9 8 31 31 H 0.96992 * 120.00378 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.77116 * 90.37714 * 19 7 5 33 33 H 1.09005 * 113.83285 * 318.91022 * 19 7 5 34 34 H 1.07992 * 120.53489 * 179.74874 * 20 4 3 35 35 H 0.96701 * 113.99893 * 270.25455 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.2011 0.0000 4 6 3.5861 1.1918 -0.0005 5 6 4.3552 2.4582 -0.0011 6 8 3.7772 3.5200 -0.1225 7 7 5.6961 2.4324 0.1330 8 6 6.7613 3.4522 0.0751 9 6 7.5821 2.4943 0.9574 10 8 7.4162 2.7184 2.3589 11 6 9.0278 2.3806 0.5476 12 1 9.4031 2.9682 -0.2772 13 6 9.8714 1.5265 1.2257 14 7 11.1330 1.4269 0.8678 15 14 9.2221 0.5097 2.6519 16 1 9.3821 1.2718 3.9164 17 1 7.7843 0.2108 2.4326 18 1 9.9842 -0.7618 2.7406 19 6 6.6896 1.3708 0.3995 20 6 4.2381 -0.0427 -0.0064 21 6 3.4774 -1.2044 -0.0010 22 8 4.0969 -2.4116 -0.0015 23 7 2.1567 -1.1476 -0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5139 27 1 1.6461 2.1359 0.0007 28 1 6.5001 4.3886 0.5682 29 1 7.1785 3.5982 -0.9212 30 1 7.9072 2.0999 2.9170 31 1 11.7266 0.8263 1.3450 32 1 7.0847 0.9025 -0.5019 33 1 6.3713 0.6484 1.1513 34 1 5.3168 -0.0935 -0.0111 35 1 4.2762 -2.7614 -0.8851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408161083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:26 Heat of formation + Delta-G solvation = -57.105580 kcal Electronic energy + Delta-G solvation = -21621.801072 eV Core-core repulsion = 18200.447441 eV Total energy + Delta-G solvation = -3421.353631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11900 -41.09979 -39.39133 -38.18630 -36.36252 -34.57745 -34.32611 -32.66869 -30.74260 -28.67822 -27.75253 -27.23496 -24.93582 -23.87171 -21.95846 -20.73941 -19.65853 -19.28382 -18.52755 -18.25347 -17.58724 -17.21356 -16.79873 -16.54784 -16.27391 -15.58447 -15.35650 -15.11927 -14.85531 -14.69745 -14.29548 -14.11153 -13.91959 -13.43871 -13.22777 -13.05798 -12.92204 -12.72403 -12.70963 -12.48412 -11.97968 -11.73689 -11.17948 -11.10100 -11.02353 -10.80161 -10.42036 -9.94342 -9.80521 -8.44470 -6.57075 -0.53671 -0.19648 1.24176 1.26157 1.38567 1.59277 1.62535 2.15519 2.36717 2.59517 2.74048 3.01496 3.25730 3.43844 3.69299 3.80689 3.85002 4.12728 4.25536 4.26810 4.37646 4.38879 4.54865 4.61191 4.71436 4.78735 4.83649 4.85218 4.98932 5.07559 5.25332 5.41210 6.02223 6.48803 6.49894 6.53638 6.64685 6.74457 6.83640 7.11439 8.70612 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.005622 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.203620 B = 4979.292836 C = 5800.296842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.150 3.850 3 C -0.131 4.131 4 C -0.073 4.073 5 C 0.570 3.430 6 O -0.573 6.573 7 N -0.626 5.626 8 C 0.128 3.872 9 C 0.185 3.815 10 O -0.562 6.562 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.035 3.965 14 N -0.920 5.920 15 Si 0.910 3.090 16 H -0.258 1.258 17 H -0.233 1.233 18 H -0.280 1.280 19 C 0.067 3.933 20 C -0.178 4.178 21 C 0.313 3.687 22 O -0.485 6.485 23 N -0.504 5.504 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.160 0.840 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.357 0.643 31 H 0.274 0.726 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 -6.981 -2.365 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.083 4.083 5 C 0.361 3.639 6 O -0.454 6.454 7 N -0.358 5.358 8 C 0.006 3.994 9 C 0.144 3.856 10 O -0.373 6.373 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.167 4.167 14 N -0.557 5.557 15 Si 0.734 3.266 16 H -0.184 1.184 17 H -0.156 1.156 18 H -0.207 1.207 19 C -0.055 4.055 20 C -0.199 4.199 21 C 0.135 3.865 22 O -0.295 6.295 23 N -0.225 5.225 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.177 0.823 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.209 0.791 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.175 0.825 35 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -17.557 -6.784 -2.049 18.934 hybrid contribution 1.533 -0.126 0.275 1.563 sum -16.024 -6.909 -1.774 17.540 Atomic orbital electron populations 1.20895 0.84921 1.05027 1.04930 1.21587 0.98755 0.85689 0.92767 1.22275 0.92367 1.01146 0.99350 1.20219 0.94932 0.92391 1.00801 1.18126 0.80626 0.88676 0.76489 1.90705 1.69271 1.32526 1.52916 1.50013 1.03660 1.13957 1.68177 1.23373 0.82395 0.93371 1.00225 1.20608 0.92874 0.92728 0.79365 1.86466 1.73286 1.59724 1.17832 1.21312 0.92759 1.25765 1.18206 0.92001 1.25724 0.94702 0.97066 0.99199 1.69976 1.05693 1.38030 1.42034 0.86474 0.80543 0.79182 0.80352 1.18411 1.15650 1.20663 1.24776 0.85607 0.93521 1.01570 1.22875 1.03301 0.91472 1.02279 1.19013 0.86760 0.85539 0.95229 1.84758 1.76804 1.31848 1.36093 1.66963 1.10066 1.31489 1.14031 0.88189 0.89713 0.88328 0.82268 0.90609 0.86933 0.79052 0.91630 0.86563 0.89546 0.82481 0.71512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.16 71.23 0.72 -0.67 16 2 C 0.15 3.40 6.78 42.50 0.29 3.69 16 3 C -0.13 -3.39 9.30 22.63 0.21 -3.18 16 4 C -0.07 -2.26 5.91 -19.90 -0.12 -2.38 16 5 C 0.57 21.29 8.01 86.88 0.70 21.98 16 6 O -0.57 -24.10 17.20 -3.73 -0.06 -24.16 16 7 N -0.63 -23.56 3.60 -842.62 -3.03 -26.60 16 8 C 0.13 5.03 8.23 86.49 0.71 5.75 16 9 C 0.19 7.95 1.06 -10.88 -0.01 7.94 16 10 O -0.56 -25.06 13.35 -148.98 -1.99 -27.05 16 11 C -0.54 -27.15 9.19 25.60 0.24 -26.92 16 12 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 13 C 0.03 1.77 5.47 84.65 0.46 2.24 16 14 N -0.92 -50.94 13.96 21.45 0.30 -50.64 16 15 Si 0.91 36.95 24.31 68.60 1.67 38.62 16 16 H -0.26 -10.17 7.05 99.48 0.70 -9.47 16 17 H -0.23 -8.47 5.16 99.48 0.51 -7.96 16 18 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 19 C 0.07 2.45 4.73 86.44 0.41 2.86 16 20 C -0.18 -5.05 9.10 22.75 0.21 -4.84 16 21 C 0.31 8.25 7.74 84.79 0.66 8.90 16 22 O -0.48 -10.78 13.56 -90.14 -1.22 -12.00 16 23 N -0.50 -13.08 10.27 -297.15 -3.05 -16.13 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.02 8.07 -2.38 -0.02 1.00 16 27 H 0.16 3.77 7.75 -2.91 -0.02 3.74 16 28 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.11 4.07 8.09 -2.39 -0.02 4.05 16 30 H 0.36 14.93 3.57 -74.06 -0.26 14.67 16 31 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.12 3.86 8.02 -2.39 -0.02 3.84 16 33 H 0.09 2.99 5.61 -2.38 -0.01 2.98 16 34 H 0.16 4.38 4.28 -2.91 -0.01 4.37 16 35 H 0.42 4.83 9.06 -74.06 -0.67 4.15 16 Total: -1.00 -67.05 296.47 -2.90 -69.94 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.03 Total: 32.65 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 4.47 Total: 15.37 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -5.79 Total: -93.37 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -3.28 Total: -63.21 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.67 Total: 38.62 kcal Total: -67.05 -2.90 -69.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408161083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.839 kcal (2) G-P(sol) polarization free energy of solvation -67.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds