Wall clock time and date at job start Tue Mar 31 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.55333 * 2 1 4 4 C 1.53293 * 109.51449 * 120.12681 * 2 1 3 5 5 N 1.47156 * 108.38596 * 172.22323 * 4 2 1 6 6 S 1.65605 * 120.97735 * 129.44205 * 5 4 2 7 7 O 1.42096 * 106.40590 * 336.46201 * 6 5 4 8 8 O 1.42108 * 106.39755 * 203.54113 * 6 5 4 9 9 N 1.65597 * 107.21939 * 90.00403 * 6 5 4 10 10 C 1.46499 * 119.99926 * 64.71969 * 9 6 5 11 11 C 1.50700 * 109.46995 * 165.27893 * 10 9 6 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99999 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99912 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47444 * 60.00040 * 15 13 11 17 17 H 1.48498 * 109.47172 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47204 * 299.99759 * 15 13 11 19 19 C 1.47145 * 118.03800 * 309.72026 * 5 4 2 20 20 C 1.52879 * 108.61062 * 50.22200 * 19 5 4 21 21 O 1.42967 * 109.51127 * 239.87540 * 2 1 3 22 22 H 1.09007 * 109.47100 * 299.87297 * 1 2 3 23 23 H 1.08999 * 109.47123 * 59.87299 * 1 2 3 24 24 H 1.09003 * 109.47307 * 179.87139 * 1 2 3 25 25 H 1.09004 * 109.46975 * 180.12956 * 3 2 1 26 26 H 1.09003 * 109.47584 * 300.12431 * 3 2 1 27 27 H 1.08999 * 109.47328 * 60.12946 * 3 2 1 28 28 H 1.08999 * 109.68387 * 52.50116 * 4 2 1 29 29 H 1.09002 * 109.71418 * 291.96607 * 4 2 1 30 30 H 0.97001 * 120.00224 * 245.00182 * 9 6 5 31 31 H 1.09007 * 109.47241 * 285.27714 * 10 9 6 32 32 H 1.08995 * 109.47308 * 45.27753 * 10 9 6 33 33 H 0.96994 * 120.00181 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.68283 * 170.00462 * 19 5 4 35 35 H 1.09003 * 109.67781 * 290.55589 * 19 5 4 36 36 H 1.08997 * 109.58490 * 187.92539 * 20 19 5 37 37 H 1.08998 * 109.40498 * 67.84023 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4417 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1335 6 16 4.5065 -0.4181 2.3672 7 8 3.7949 0.5495 3.1264 8 8 5.7747 -0.1647 1.7782 9 7 4.7034 -1.7338 3.3534 10 6 5.3748 -2.9338 2.8482 11 6 5.7477 -3.8252 4.0048 12 1 5.5080 -3.5277 5.0149 13 6 6.3948 -5.0205 3.7732 14 7 6.6862 -5.3830 2.5430 15 14 6.8576 -6.1250 5.2067 16 1 5.6306 -6.5185 5.9448 17 1 7.5381 -7.3416 4.6948 18 1 7.7716 -5.3935 6.1204 19 6 4.0410 -1.4405 -0.1136 20 6 3.4312 -0.6855 -1.2949 21 8 2.0075 -0.6763 -1.1656 22 1 -0.3634 0.5119 0.8912 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 3.1321 1.4402 -0.0023 26 1 1.6776 1.9568 -0.8889 27 1 1.6813 1.9554 0.8911 28 1 1.5758 -1.7079 1.3208 29 1 1.8031 -0.1404 2.1380 30 1 4.3705 -1.7114 4.2642 31 1 4.7038 -3.4705 2.1775 32 1 6.2757 -2.6454 2.3067 33 1 7.1411 -6.2240 2.3800 34 1 5.1251 -1.3287 -0.1281 35 1 3.7795 -2.4965 -0.1821 36 1 3.7090 -1.1786 -2.2264 37 1 3.8028 0.3392 -1.3004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408358488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:41 Heat of formation + Delta-G solvation = -125.343901 kcal Electronic energy + Delta-G solvation = -21227.544017 eV Core-core repulsion = 17938.675302 eV Total energy + Delta-G solvation = -3288.868715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80500 -36.82919 -35.38650 -34.73747 -34.55991 -33.67939 -32.16458 -28.97533 -27.44331 -26.75210 -25.67498 -23.01845 -22.48993 -19.72057 -18.94664 -17.71267 -17.29711 -16.65553 -16.03767 -15.73674 -15.16565 -14.97887 -14.78792 -14.39161 -14.24450 -13.50520 -13.28252 -12.65657 -12.46493 -12.26113 -12.21096 -12.12432 -12.04520 -11.92643 -11.78272 -11.59874 -11.54293 -11.34357 -11.20050 -10.94907 -10.79834 -10.25433 -10.16868 -10.06129 -9.48306 -8.96301 -8.64459 -8.24868 -6.20491 -4.25230 1.08520 3.24899 3.28235 3.29678 3.34356 3.69428 4.04331 4.32246 4.56304 4.76241 4.79948 4.97496 4.99928 5.16305 5.21309 5.37384 5.40390 5.49974 5.55543 5.61614 5.68567 5.73650 5.89150 5.96590 6.01375 6.17672 6.22977 6.46972 6.64460 7.20274 7.25418 7.31642 7.76865 7.79632 8.15475 8.78664 9.39913 10.89852 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.005189 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.561004 B = 5395.240313 C = 5657.319743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.101 3.899 3 C -0.179 4.179 4 C 0.099 3.901 5 N -1.008 6.008 6 S 2.783 3.217 7 O -0.997 6.997 8 O -0.981 6.981 9 N -1.114 6.114 10 C 0.250 3.750 11 C -0.531 4.531 12 H 0.064 0.936 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.084 3.916 20 C 0.050 3.950 21 O -0.371 6.371 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.408 0.592 31 H 0.021 0.979 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 9.045 -6.375 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 C -0.236 4.236 4 C -0.027 4.027 5 N -0.847 5.847 6 S 2.792 3.208 7 O -0.981 6.981 8 O -0.965 6.965 9 N -0.878 5.878 10 C 0.126 3.874 11 C -0.571 4.571 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.041 4.041 20 C -0.029 4.029 21 O -0.290 6.290 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.241 0.759 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.065 9.660 -6.698 15.476 hybrid contribution 0.270 -1.058 1.230 1.645 sum -9.795 8.602 -5.469 14.137 Atomic orbital electron populations 1.21724 0.91819 1.03126 1.02708 1.21785 0.94898 0.91429 0.85843 1.22404 1.02162 0.96146 1.02909 1.22058 0.80075 1.01508 0.99038 1.58220 1.16578 1.79778 1.30131 1.01789 0.73135 0.73297 0.72622 1.93536 1.74521 1.59333 1.70734 1.93578 1.40310 1.84525 1.78048 1.55817 1.73326 1.33454 1.25156 1.19007 0.91850 0.80679 0.95829 1.21170 1.39129 1.03838 0.92962 0.91772 1.24972 0.95343 0.97671 0.96164 1.69920 1.40566 1.23098 1.19267 0.86464 0.78757 0.79639 0.82002 1.20102 1.21074 1.20037 1.22030 0.99995 0.98689 0.83417 1.22860 0.81354 1.00282 0.98365 1.87960 1.20964 1.76966 1.43099 0.90808 0.91583 0.91494 0.92145 0.91704 0.90994 0.90621 0.88345 0.75919 0.96118 0.94732 0.92386 0.87842 0.90243 0.87768 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 2 C 0.10 1.23 1.11 -90.47 -0.10 1.13 16 3 C -0.18 -2.08 8.10 37.16 0.30 -1.78 16 4 C 0.10 1.35 5.38 -3.53 -0.02 1.33 16 5 N -1.01 -15.97 2.92 -113.30 -0.33 -16.30 16 6 S 2.78 52.58 6.20 -107.50 -0.67 51.91 16 7 O -1.00 -19.40 16.76 -57.17 -0.96 -20.36 16 8 O -0.98 -21.38 16.24 -57.17 -0.93 -22.31 16 9 N -1.11 -22.90 6.05 -11.66 -0.07 -22.97 16 10 C 0.25 6.17 6.00 -5.19 -0.03 6.14 16 11 C -0.53 -14.27 9.27 -34.44 -0.32 -14.59 16 12 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 15 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.08 1.25 6.68 -3.75 -0.03 1.23 16 20 C 0.05 0.62 6.58 37.10 0.24 0.86 16 21 O -0.37 -4.91 10.23 -35.23 -0.36 -5.27 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.78 6.11 -51.93 -0.32 0.46 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.29 6.94 -51.93 -0.36 0.93 16 30 H 0.41 7.76 8.54 -34.47 -0.29 7.46 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.93 7.76 -51.93 -0.40 0.53 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.10 1.61 6.94 -51.93 -0.36 1.25 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.69 6.25 -51.93 -0.32 0.36 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -31.93 311.75 -8.02 -39.95 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.40 Total: 4.47 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 0.28 Total: -5.06 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.33 Total: -63.77 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.25 Total: -47.94 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.67 Total: 51.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.93 -8.02 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408358488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.390 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds