Wall clock time and date at job start Tue Mar 31 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.55333 * 2 1 4 4 C 1.53293 * 109.51449 * 120.12681 * 2 1 3 5 5 N 1.47156 * 108.38596 * 172.22323 * 4 2 1 6 6 S 1.65605 * 120.97735 * 129.44205 * 5 4 2 7 7 O 1.42096 * 106.40590 * 336.46201 * 6 5 4 8 8 O 1.42108 * 106.39755 * 203.54113 * 6 5 4 9 9 N 1.65597 * 107.21939 * 90.00403 * 6 5 4 10 10 C 1.46499 * 119.99926 * 64.71969 * 9 6 5 11 11 C 1.50700 * 109.46995 * 165.27893 * 10 9 6 12 12 H 1.07999 * 120.00045 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99999 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99912 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47444 * 60.00040 * 15 13 11 17 17 H 1.48498 * 109.47172 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47204 * 299.99759 * 15 13 11 19 19 C 1.47145 * 118.03800 * 309.72026 * 5 4 2 20 20 C 1.52879 * 108.61062 * 50.22200 * 19 5 4 21 21 O 1.42967 * 109.51127 * 239.87540 * 2 1 3 22 22 H 1.09007 * 109.47100 * 299.87297 * 1 2 3 23 23 H 1.08999 * 109.47123 * 59.87299 * 1 2 3 24 24 H 1.09003 * 109.47307 * 179.87139 * 1 2 3 25 25 H 1.09004 * 109.46975 * 180.12956 * 3 2 1 26 26 H 1.09003 * 109.47584 * 300.12431 * 3 2 1 27 27 H 1.08999 * 109.47328 * 60.12946 * 3 2 1 28 28 H 1.08999 * 109.68387 * 52.50116 * 4 2 1 29 29 H 1.09002 * 109.71418 * 291.96607 * 4 2 1 30 30 H 0.97001 * 120.00224 * 245.00182 * 9 6 5 31 31 H 1.09007 * 109.47241 * 285.27714 * 10 9 6 32 32 H 1.08995 * 109.47308 * 45.27753 * 10 9 6 33 33 H 0.96994 * 120.00181 * 180.02562 * 14 13 11 34 34 H 1.08992 * 109.68283 * 170.00462 * 19 5 4 35 35 H 1.09003 * 109.67781 * 290.55589 * 19 5 4 36 36 H 1.08997 * 109.58490 * 187.92539 * 20 19 5 37 37 H 1.08998 * 109.40498 * 67.84023 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4417 0.0000 4 6 2.0420 -0.7252 1.2497 5 7 3.5012 -0.8762 1.1335 6 16 4.5065 -0.4181 2.3672 7 8 3.7949 0.5495 3.1264 8 8 5.7747 -0.1647 1.7782 9 7 4.7034 -1.7338 3.3534 10 6 5.3748 -2.9338 2.8482 11 6 5.7477 -3.8252 4.0048 12 1 5.5080 -3.5277 5.0149 13 6 6.3948 -5.0205 3.7732 14 7 6.6862 -5.3830 2.5430 15 14 6.8576 -6.1250 5.2067 16 1 5.6306 -6.5185 5.9448 17 1 7.5381 -7.3416 4.6948 18 1 7.7716 -5.3935 6.1204 19 6 4.0410 -1.4405 -0.1136 20 6 3.4312 -0.6855 -1.2949 21 8 2.0075 -0.6763 -1.1656 22 1 -0.3634 0.5119 0.8912 23 1 -0.3633 0.5158 -0.8888 24 1 -0.3634 -1.0277 -0.0023 25 1 3.1321 1.4402 -0.0023 26 1 1.6776 1.9568 -0.8889 27 1 1.6813 1.9554 0.8911 28 1 1.5758 -1.7079 1.3208 29 1 1.8031 -0.1404 2.1380 30 1 4.3705 -1.7114 4.2642 31 1 4.7038 -3.4705 2.1775 32 1 6.2757 -2.6454 2.3067 33 1 7.1411 -6.2240 2.3800 34 1 5.1251 -1.3287 -0.1281 35 1 3.7795 -2.4965 -0.1821 36 1 3.7090 -1.1786 -2.2264 37 1 3.8028 0.3392 -1.3004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408358488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:41 Heat of formation + Delta-G solvation = -150.159825 kcal Electronic energy + Delta-G solvation = -21228.620117 eV Core-core repulsion = 17938.675302 eV Total energy + Delta-G solvation = -3289.944814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83929 -38.44316 -37.01704 -36.50856 -35.85946 -34.63980 -34.15019 -30.04457 -28.75356 -28.27719 -26.79347 -24.54266 -24.04341 -20.90925 -20.34203 -19.27089 -18.89579 -17.91155 -17.71731 -17.15157 -16.67156 -16.26323 -15.95514 -15.71806 -15.47972 -15.19812 -14.55884 -14.27137 -14.10988 -13.68495 -13.60604 -13.37954 -13.28198 -13.21479 -12.99811 -12.88968 -12.75277 -12.71552 -12.58778 -12.46061 -12.19673 -12.11989 -11.47902 -11.31774 -11.16842 -10.86978 -10.19168 -9.81624 -8.27255 -6.39901 -0.44711 1.43550 1.45815 1.53790 1.85452 2.38728 2.49798 2.75401 3.07394 3.25547 3.63726 3.73352 3.95442 4.00386 4.13357 4.28650 4.29710 4.52751 4.60212 4.65531 4.72172 4.79613 4.85381 4.91912 5.00661 5.03652 5.21735 5.23735 5.29368 5.33863 5.45912 5.71446 5.96027 6.22441 6.26864 6.73655 7.30052 8.83544 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.005189 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.561004 B = 5395.240313 C = 5657.319743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.098 3.902 3 C -0.180 4.180 4 C 0.090 3.910 5 N -1.004 6.004 6 S 2.799 3.201 7 O -1.000 7.000 8 O -1.012 7.012 9 N -1.115 6.115 10 C 0.264 3.736 11 C -0.554 4.554 12 H 0.072 0.928 13 C 0.010 3.990 14 N -0.924 5.924 15 Si 0.973 3.027 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.270 1.270 19 C 0.079 3.921 20 C 0.053 3.947 21 O -0.377 6.377 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.414 0.586 31 H 0.013 0.987 32 H 0.006 0.994 33 H 0.269 0.731 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 9.124 -6.105 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 C -0.237 4.237 4 C -0.035 4.035 5 N -0.845 5.845 6 S 2.808 3.192 7 O -0.984 6.984 8 O -0.996 6.996 9 N -0.877 5.877 10 C 0.140 3.860 11 C -0.593 4.593 12 H 0.090 0.910 13 C -0.190 4.190 14 N -0.563 5.563 15 Si 0.797 3.203 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.046 4.046 20 C -0.025 4.025 21 O -0.296 6.296 22 H 0.109 0.891 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.248 0.752 31 H 0.031 0.969 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.385 9.756 -6.407 16.305 hybrid contribution 0.629 -1.031 1.101 1.635 sum -10.756 8.725 -5.306 14.831 Atomic orbital electron populations 1.21749 0.89509 1.03676 1.04066 1.21974 0.96574 0.91195 0.84571 1.22430 1.01050 0.96163 1.04081 1.22371 0.78306 1.02387 1.00425 1.57969 1.17501 1.79589 1.29444 1.01169 0.72656 0.72815 0.72517 1.93524 1.74400 1.59229 1.71221 1.93534 1.42584 1.84952 1.78529 1.55704 1.73392 1.32506 1.26130 1.18578 0.90745 0.81588 0.95119 1.21596 1.39391 1.04532 0.93824 0.91029 1.25885 0.95107 0.99178 0.98855 1.70036 1.41208 1.23691 1.21337 0.85384 0.78753 0.77559 0.78609 1.18936 1.20672 1.19532 1.22160 0.99538 0.99005 0.83946 1.22918 0.81098 1.00415 0.98033 1.87963 1.21024 1.77181 1.43474 0.89134 0.90578 0.91374 0.93882 0.90081 0.90345 0.89988 0.87821 0.75154 0.96917 0.97626 0.92172 0.89180 0.90548 0.85364 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.85 71.98 0.64 -1.50 16 2 C 0.10 2.18 1.11 -10.70 -0.01 2.16 16 3 C -0.18 -3.86 8.10 71.98 0.58 -3.28 16 4 C 0.09 2.33 5.38 86.35 0.46 2.80 16 5 N -1.00 -31.59 2.92 -512.38 -1.50 -33.09 16 6 S 2.80 106.41 6.20 -56.49 -0.35 106.06 16 7 O -1.00 -38.26 16.76 -128.00 -2.15 -40.41 16 8 O -1.01 -45.12 16.24 -128.00 -2.08 -47.20 16 9 N -1.12 -46.29 6.05 -190.79 -1.15 -47.44 16 10 C 0.26 13.35 6.00 85.63 0.51 13.87 16 11 C -0.55 -29.88 9.27 25.60 0.24 -29.64 16 12 H 0.07 3.65 7.65 -2.91 -0.02 3.63 16 13 C 0.01 0.55 5.46 84.66 0.46 1.01 16 14 N -0.92 -52.85 13.29 21.45 0.28 -52.57 16 15 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 C 0.08 2.35 6.68 86.22 0.58 2.93 16 20 C 0.05 1.27 6.58 71.94 0.47 1.74 16 21 O -0.38 -9.30 10.23 -148.98 -1.52 -10.83 16 22 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 1.06 6.11 -2.38 -0.01 1.05 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.10 2.55 6.94 -2.39 -0.02 2.54 16 30 H 0.41 15.74 8.54 -96.74 -0.83 14.91 16 31 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.01 0.32 7.76 -2.39 -0.02 0.31 16 33 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.09 2.91 6.94 -2.39 -0.02 2.89 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.06 1.42 6.25 -2.39 -0.01 1.40 16 Total: -1.00 -67.13 311.75 -2.26 -69.39 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.25 Total: 21.83 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 3.94 Total: -9.91 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -2.37 Total: -133.10 kcal Atomic # 8 Polarization: -92.68 SS G_CDS: -5.75 Total: -98.43 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 106.41 SS G_CDS: -0.35 Total: 106.06 kcal Total: -67.13 -2.26 -69.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408358488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.773 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds