Wall clock time and date at job start Tue Mar 31 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 110.66316 * 2 1 4 4 C 1.55002 * 111.16473 * 236.62594 * 2 1 3 5 5 C 1.51648 * 101.85773 * 267.21676 * 4 2 1 6 6 C 1.37736 * 132.17224 * 163.84030 * 5 4 2 7 7 C 1.38348 * 119.98042 * 180.90391 * 6 5 4 8 8 C 1.38285 * 119.76935 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.34715 * 359.81807 * 8 7 6 10 10 C 1.50705 * 119.88089 * 179.97438 * 9 8 7 11 11 S 1.81405 * 109.46754 * 89.99724 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47410 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99606 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00005 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00207 * 17 15 13 19 19 H 1.48503 * 109.47010 * 210.00273 * 17 15 13 20 20 H 1.48496 * 109.47272 * 329.99946 * 17 15 13 21 21 C 1.38882 * 107.04007 * 344.53363 * 5 4 2 22 22 O 1.36136 * 111.22045 * 358.67581 * 21 5 4 23 23 H 1.09000 * 109.47228 * 298.22980 * 1 2 3 24 24 H 1.09001 * 109.46630 * 58.23020 * 1 2 3 25 25 H 1.08997 * 109.46757 * 178.22795 * 1 2 3 26 26 H 1.09000 * 109.46510 * 181.76352 * 3 2 1 27 27 H 1.08995 * 109.47624 * 301.76559 * 3 2 1 28 28 H 1.09007 * 109.47196 * 61.77050 * 3 2 1 29 29 H 1.08999 * 111.45177 * 148.87378 * 4 2 1 30 30 H 1.08996 * 110.50216 * 25.14260 * 4 2 1 31 31 H 1.08007 * 120.01337 * 0.87820 * 6 5 4 32 32 H 1.08002 * 120.11697 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.82817 * 179.79072 * 8 7 6 34 34 H 1.09000 * 109.47022 * 329.99997 * 10 9 8 35 35 H 1.08998 * 109.46894 * 209.99552 * 10 9 8 36 36 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 37 37 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 38 38 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0897 -0.7952 -1.2071 5 6 2.2694 -2.1786 -0.6126 6 6 2.4517 -3.4162 -1.1890 7 6 2.5724 -4.5396 -0.3906 8 6 2.5099 -4.4142 0.9851 9 6 2.3317 -3.1752 1.5646 10 6 2.2645 -3.0508 3.0650 11 16 3.9331 -2.7841 3.7249 12 6 3.6501 -2.6619 5.5125 13 6 4.9641 -2.4352 6.2148 14 1 5.8781 -2.3715 5.6429 15 6 4.9996 -2.3102 7.5874 16 7 6.1462 -2.1119 8.2001 17 14 3.4189 -2.4212 8.5765 18 1 3.1733 -3.8346 8.9602 19 1 3.5419 -1.5900 9.8010 20 1 2.2850 -1.9271 7.7548 21 6 2.2072 -2.0396 0.7679 22 8 2.0395 -0.7366 1.1248 23 1 -0.3634 0.4861 0.9054 24 1 -0.3632 0.5411 -0.8737 25 1 -0.3633 -1.0272 -0.0318 26 1 3.1593 1.4090 -0.0316 27 1 1.6921 1.9625 -0.8737 28 1 1.7434 1.9431 0.9055 29 1 3.0435 -0.3892 -1.5442 30 1 1.3657 -0.8123 -2.0217 31 1 2.5000 -3.5098 -2.2639 32 1 2.7150 -5.5112 -0.8402 33 1 2.6006 -5.2910 1.6091 34 1 1.8487 -3.9656 3.4872 35 1 1.6291 -2.2061 3.3314 36 1 2.9800 -1.8272 5.7181 37 1 3.1998 -3.5867 5.8732 38 1 6.1713 -2.0243 9.1659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:05 Heat of formation + Delta-G solvation = -21.393576 kcal Electronic energy + Delta-G solvation = -18940.291975 eV Core-core repulsion = 16066.780147 eV Total energy + Delta-G solvation = -2873.511828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.35063 -37.80393 -34.10353 -32.99291 -32.48334 -30.82376 -29.30545 -27.68932 -26.80939 -26.53161 -22.56368 -22.16010 -20.79795 -20.66654 -17.21491 -16.88502 -16.25970 -16.02101 -15.38778 -15.21307 -14.42328 -14.19933 -13.99320 -13.74122 -13.28932 -13.24031 -12.94566 -12.84930 -12.65376 -12.40133 -12.27587 -12.20826 -12.11336 -11.81346 -11.51938 -11.17285 -10.89384 -10.78785 -10.75306 -10.47849 -10.03765 -9.64041 -8.95470 -8.67580 -8.55320 -7.99273 -6.69850 -6.14023 -4.15505 1.22516 1.39446 2.69785 3.19688 3.23840 3.31116 3.33062 3.73858 3.84094 4.27074 4.34587 4.36102 4.61161 4.76346 4.84570 4.98302 5.13176 5.17281 5.26098 5.30281 5.36980 5.41452 5.49743 5.54655 5.59157 5.64109 5.77145 5.83836 5.91810 5.99706 6.15481 6.37943 6.42995 6.55655 6.63730 6.71684 6.75786 7.27470 7.47810 8.35082 8.89273 9.42002 10.98206 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.004420 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.764375 B = 6333.896658 C = 7006.375612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 C -0.142 4.142 4 C -0.097 4.097 5 C -0.179 4.179 6 C -0.075 4.075 7 C -0.149 4.149 8 C -0.072 4.072 9 C -0.076 4.076 10 C -0.056 4.056 11 S -0.257 6.257 12 C 0.044 3.956 13 C -0.511 4.511 14 H 0.083 0.917 15 C 0.079 3.921 16 N -0.893 5.893 17 Si 0.878 3.122 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.126 3.874 22 O -0.284 6.284 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 1.233 -20.665 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 C -0.199 4.199 4 C -0.134 4.134 5 C -0.180 4.180 6 C -0.094 4.094 7 C -0.168 4.168 8 C -0.091 4.091 9 C -0.078 4.078 10 C -0.204 4.204 11 S -0.028 6.028 12 C -0.104 4.104 13 C -0.550 4.550 14 H 0.101 0.899 15 C -0.125 4.125 16 N -0.531 5.531 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.078 3.922 22 O -0.198 6.198 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.995 1.478 -20.771 24.032 hybrid contribution -1.846 -0.170 1.256 2.239 sum -13.841 1.308 -19.515 23.961 Atomic orbital electron populations 1.22179 0.93601 1.03004 1.03083 1.22812 0.94132 0.93158 0.83902 1.21835 1.02272 0.92702 1.03091 1.21896 1.02303 0.91304 0.97943 1.20697 1.08137 0.95378 0.93747 1.20233 0.98953 0.90632 0.99566 1.20948 1.04089 0.98391 0.93342 1.20807 0.97317 0.96049 0.94970 1.18626 1.05183 0.90501 0.93471 1.22143 1.00094 1.04532 0.93615 1.86959 1.09764 1.95775 1.10297 1.21425 1.01618 0.98917 0.88441 1.20490 0.91904 1.50792 0.91820 0.89872 1.24854 0.96278 0.94233 0.97133 1.69870 1.24864 1.48769 1.09549 0.86807 0.84116 0.78629 0.80002 1.19902 1.20818 1.19096 1.19262 0.95904 0.84737 0.92248 1.87000 1.79456 1.16098 1.37265 0.91198 0.90868 0.91939 0.91196 0.90577 0.91098 0.89091 0.89477 0.86117 0.85524 0.84969 0.90006 0.89979 0.94801 0.95273 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.87 37.16 0.33 -1.17 16 2 C 0.10 1.09 1.26 -89.56 -0.11 0.98 16 3 C -0.14 -1.32 8.96 37.16 0.33 -0.99 16 4 C -0.10 -0.99 6.20 -26.36 -0.16 -1.16 16 5 C -0.18 -2.31 6.27 -104.10 -0.65 -2.96 16 6 C -0.07 -0.86 10.03 -39.72 -0.40 -1.26 16 7 C -0.15 -1.75 10.07 -39.52 -0.40 -2.14 16 8 C -0.07 -0.99 9.66 -39.68 -0.38 -1.37 16 9 C -0.08 -1.23 5.16 -104.34 -0.54 -1.76 16 10 C -0.06 -1.01 6.04 36.01 0.22 -0.79 16 11 S -0.26 -5.84 21.64 -107.50 -2.33 -8.17 16 12 C 0.04 1.11 4.77 36.01 0.17 1.28 16 13 C -0.51 -15.12 9.68 -34.44 -0.33 -15.46 16 14 H 0.08 2.70 7.96 -52.48 -0.42 2.28 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 16 N -0.89 -27.57 13.96 55.43 0.77 -26.80 16 17 Si 0.88 21.52 27.47 -169.99 -4.67 16.86 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.13 1.97 6.63 -38.95 -0.26 1.71 16 22 O -0.28 -4.51 10.40 -20.17 -0.21 -4.72 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.87 7.93 -51.93 -0.41 0.46 16 30 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.08 1.33 8.08 -51.92 -0.42 0.91 16 35 H 0.08 1.48 8.01 -51.92 -0.42 1.06 16 36 H 0.03 0.85 7.20 -51.92 -0.37 0.48 16 37 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 38 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -32.88 329.23 -9.57 -42.45 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.81 Total: -1.71 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.28 Total: -22.87 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.21 Total: -4.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -2.33 Total: -8.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.88 -9.57 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.052 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds