Wall clock time and date at job start Tue Mar 31 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 110.66316 * 2 1 4 4 C 1.55002 * 111.16473 * 236.62594 * 2 1 3 5 5 C 1.51648 * 101.85773 * 267.21676 * 4 2 1 6 6 C 1.37736 * 132.17224 * 163.84030 * 5 4 2 7 7 C 1.38348 * 119.98042 * 180.90391 * 6 5 4 8 8 C 1.38285 * 119.76935 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.34715 * 359.81807 * 8 7 6 10 10 C 1.50705 * 119.88089 * 179.97438 * 9 8 7 11 11 S 1.81405 * 109.46754 * 89.99724 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47410 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99606 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00005 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00207 * 17 15 13 19 19 H 1.48503 * 109.47010 * 210.00273 * 17 15 13 20 20 H 1.48496 * 109.47272 * 329.99946 * 17 15 13 21 21 C 1.38882 * 107.04007 * 344.53363 * 5 4 2 22 22 O 1.36136 * 111.22045 * 358.67581 * 21 5 4 23 23 H 1.09000 * 109.47228 * 298.22980 * 1 2 3 24 24 H 1.09001 * 109.46630 * 58.23020 * 1 2 3 25 25 H 1.08997 * 109.46757 * 178.22795 * 1 2 3 26 26 H 1.09000 * 109.46510 * 181.76352 * 3 2 1 27 27 H 1.08995 * 109.47624 * 301.76559 * 3 2 1 28 28 H 1.09007 * 109.47196 * 61.77050 * 3 2 1 29 29 H 1.08999 * 111.45177 * 148.87378 * 4 2 1 30 30 H 1.08996 * 110.50216 * 25.14260 * 4 2 1 31 31 H 1.08007 * 120.01337 * 0.87820 * 6 5 4 32 32 H 1.08002 * 120.11697 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.82817 * 179.79072 * 8 7 6 34 34 H 1.09000 * 109.47022 * 329.99997 * 10 9 8 35 35 H 1.08998 * 109.46894 * 209.99552 * 10 9 8 36 36 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 37 37 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 38 38 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0897 -0.7952 -1.2071 5 6 2.2694 -2.1786 -0.6126 6 6 2.4517 -3.4162 -1.1890 7 6 2.5724 -4.5396 -0.3906 8 6 2.5099 -4.4142 0.9851 9 6 2.3317 -3.1752 1.5646 10 6 2.2645 -3.0508 3.0650 11 16 3.9331 -2.7841 3.7249 12 6 3.6501 -2.6619 5.5125 13 6 4.9641 -2.4352 6.2148 14 1 5.8781 -2.3715 5.6429 15 6 4.9996 -2.3102 7.5874 16 7 6.1462 -2.1119 8.2001 17 14 3.4189 -2.4212 8.5765 18 1 3.1733 -3.8346 8.9602 19 1 3.5419 -1.5900 9.8010 20 1 2.2850 -1.9271 7.7548 21 6 2.2072 -2.0396 0.7679 22 8 2.0395 -0.7366 1.1248 23 1 -0.3634 0.4861 0.9054 24 1 -0.3632 0.5411 -0.8737 25 1 -0.3633 -1.0272 -0.0318 26 1 3.1593 1.4090 -0.0316 27 1 1.6921 1.9625 -0.8737 28 1 1.7434 1.9431 0.9055 29 1 3.0435 -0.3892 -1.5442 30 1 1.3657 -0.8123 -2.0217 31 1 2.5000 -3.5098 -2.2639 32 1 2.7150 -5.5112 -0.8402 33 1 2.6006 -5.2910 1.6091 34 1 1.8487 -3.9656 3.4872 35 1 1.6291 -2.2061 3.3314 36 1 2.9800 -1.8272 5.7181 37 1 3.1998 -3.5867 5.8732 38 1 6.1713 -2.0243 9.1659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:02 Heat of formation + Delta-G solvation = -40.107567 kcal Electronic energy + Delta-G solvation = -18941.103475 eV Core-core repulsion = 16066.780147 eV Total energy + Delta-G solvation = -2874.323327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.30407 -38.77891 -35.23949 -35.04670 -33.49071 -31.79598 -31.48022 -28.41353 -27.96830 -27.44703 -24.67935 -23.16720 -21.85801 -21.55140 -19.12225 -18.17835 -17.43184 -17.14407 -16.68551 -16.35709 -16.13828 -15.44904 -15.25685 -14.93714 -14.76041 -14.55455 -14.33272 -14.11498 -13.68040 -13.62374 -13.54460 -13.15667 -12.92182 -12.75130 -12.69694 -12.53633 -12.32349 -12.22560 -11.87287 -11.81362 -11.73905 -11.53040 -10.92091 -10.78854 -9.63308 -9.03242 -8.53254 -8.40245 -6.50241 0.09899 0.39849 1.16109 1.30700 1.33583 1.44122 1.95916 2.26741 2.29240 2.80438 2.92050 3.43421 3.51277 3.72213 3.85933 3.89589 4.06328 4.16978 4.30011 4.44319 4.53655 4.56734 4.57725 4.64976 4.69036 4.70878 4.73033 4.81164 4.87260 5.00338 5.06920 5.21544 5.26483 5.29620 5.42700 5.44887 5.55058 5.80153 6.04443 6.29319 6.52799 7.12055 8.75854 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.004420 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.764375 B = 6333.896658 C = 7006.375612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 C -0.140 4.140 4 C -0.091 4.091 5 C -0.185 4.185 6 C -0.068 4.068 7 C -0.146 4.146 8 C -0.080 4.080 9 C -0.110 4.110 10 C -0.032 4.032 11 S -0.301 6.301 12 C 0.050 3.950 13 C -0.531 4.531 14 H 0.033 0.967 15 C 0.021 3.979 16 N -0.939 5.939 17 Si 0.955 3.045 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.251 1.251 21 C 0.102 3.898 22 O -0.321 6.321 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.042 0.958 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 0.730 -22.905 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 C -0.197 4.197 4 C -0.128 4.128 5 C -0.185 4.185 6 C -0.086 4.086 7 C -0.164 4.164 8 C -0.100 4.100 9 C -0.112 4.112 10 C -0.179 4.179 11 S -0.072 6.072 12 C -0.098 4.098 13 C -0.569 4.569 14 H 0.052 0.948 15 C -0.179 4.179 16 N -0.578 5.578 17 Si 0.777 3.223 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.175 1.175 21 C 0.054 3.946 22 O -0.236 6.236 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.577 0.977 -23.020 27.265 hybrid contribution -0.985 -0.002 1.770 2.026 sum -15.563 0.975 -21.250 26.358 Atomic orbital electron populations 1.22164 0.92263 1.02758 1.04140 1.23210 0.95274 0.93519 0.83215 1.21885 1.01542 0.92113 1.04195 1.21968 1.03409 0.89327 0.98098 1.21117 1.07427 0.97209 0.92796 1.20714 0.96722 0.89774 1.01437 1.21356 1.02513 1.00101 0.92396 1.21036 0.97162 0.95417 0.96395 1.18701 1.08337 0.92051 0.92160 1.22089 0.95726 1.04868 0.95236 1.87012 1.15309 1.96031 1.08812 1.21190 0.99207 0.99281 0.90101 1.20657 0.92141 1.51636 0.92489 0.94823 1.25900 1.00586 0.93202 0.98250 1.70020 1.27763 1.49666 1.10341 0.85598 0.78992 0.79594 0.78154 1.18188 1.19858 1.17472 1.19561 0.96704 0.84604 0.93681 1.86955 1.80042 1.16694 1.39906 0.92069 0.87729 0.92903 0.92423 0.87196 0.92088 0.88527 0.86388 0.82534 0.82320 0.84191 0.88362 0.90677 0.94664 0.93963 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.87 71.98 0.64 -1.98 16 2 C 0.08 1.78 1.26 -10.10 -0.01 1.77 16 3 C -0.14 -2.46 8.96 71.98 0.64 -1.81 16 4 C -0.09 -1.61 6.20 30.84 0.19 -1.42 16 5 C -0.18 -4.38 6.27 -19.53 -0.12 -4.50 16 6 C -0.07 -1.32 10.03 22.18 0.22 -1.10 16 7 C -0.15 -2.96 10.07 22.31 0.22 -2.74 16 8 C -0.08 -2.10 9.66 22.21 0.21 -1.89 16 9 C -0.11 -3.54 5.16 -19.68 -0.10 -3.64 16 10 C -0.03 -1.16 6.04 71.24 0.43 -0.73 16 11 S -0.30 -14.13 21.64 -56.49 -1.22 -15.35 16 12 C 0.05 2.59 4.77 71.24 0.34 2.92 16 13 C -0.53 -32.72 9.68 25.60 0.25 -32.47 16 14 H 0.03 2.34 7.96 -2.91 -0.02 2.31 16 15 C 0.02 1.23 5.47 84.65 0.46 1.70 16 16 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 17 Si 0.96 44.42 27.47 68.60 1.88 46.30 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C 0.10 3.15 6.63 22.68 0.15 3.30 16 22 O -0.32 -10.31 10.40 -95.10 -0.99 -11.30 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 26 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 1.60 7.93 -2.39 -0.02 1.58 16 30 H 0.12 1.33 7.92 -2.39 -0.02 1.31 16 31 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.10 3.14 8.08 -2.39 -0.02 3.12 16 35 H 0.07 2.77 8.01 -2.39 -0.02 2.75 16 36 H 0.04 1.78 7.20 -2.39 -0.02 1.76 16 37 H 0.04 2.04 7.57 -2.39 -0.02 2.02 16 38 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -75.50 329.23 4.48 -71.03 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.97 Total: 11.37 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.53 Total: -42.59 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.99 Total: -11.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -1.22 Total: -15.35 kcal Total: -75.50 4.48 -71.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.920 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds