Wall clock time and date at job start Mon Mar 30 2020 23:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48500 * 109.47085 * 239.99943 * 3 2 1 5 5 H 1.48497 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46882 * 120.00200 * 3 2 1 7 7 C 1.39945 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99544 * 161.79993 * 7 2 1 9 9 C 1.41392 * 120.00078 * 341.79352 * 7 2 1 10 10 C 1.40715 * 120.24412 * 335.49838 * 9 7 2 11 11 C 1.37623 * 119.74559 * 180.29869 * 10 9 7 12 12 C 1.38632 * 120.24602 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.75151 * 179.97438 * 12 11 10 14 14 S 1.81396 * 109.47199 * 270.02951 * 13 12 11 15 15 C 1.81408 * 103.00087 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47139 * 179.97438 * 15 14 13 17 17 H 1.09001 * 112.85585 * 314.67086 * 16 15 14 18 18 C 1.53792 * 113.61295 * 85.86704 * 16 15 14 19 19 C 1.53951 * 87.01786 * 139.94958 * 18 16 15 20 20 H 1.08997 * 113.61569 * 89.20230 * 19 18 16 21 21 O 1.42902 * 113.66304 * 220.06457 * 19 18 16 22 22 C 1.53776 * 87.11507 * 334.63624 * 19 18 16 23 23 C 1.38636 * 120.50296 * 0.02562 * 12 11 10 24 24 C 1.37617 * 120.25081 * 0.02562 * 23 12 11 25 25 H 0.97006 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.13020 * 0.25837 * 10 9 7 27 27 H 1.07995 * 119.87216 * 179.97438 * 11 10 9 28 28 H 1.09005 * 109.46575 * 30.02234 * 13 12 11 29 29 H 1.08994 * 109.47617 * 150.02499 * 13 12 11 30 30 H 1.09003 * 109.46670 * 300.00164 * 15 14 13 31 31 H 1.09002 * 109.46850 * 59.99456 * 15 14 13 32 32 H 1.08999 * 113.61054 * 254.52793 * 18 16 15 33 33 H 1.08999 * 113.61515 * 25.42898 * 18 16 15 34 34 H 0.96701 * 114.00263 * 277.55984 * 21 19 18 35 35 H 1.09002 * 113.61544 * 270.81258 * 22 19 18 36 36 H 1.09002 * 113.61648 * 139.91383 * 22 19 18 37 37 H 1.08000 * 119.87830 * 179.97438 * 23 12 11 38 38 H 1.07998 * 120.13138 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0475 -1.2352 -0.2927 9 6 1.3541 -2.4060 0.3815 10 6 0.2287 -2.3591 1.2250 11 6 -0.3962 -3.5280 1.5954 12 6 0.0788 -4.7483 1.1403 13 6 -0.6137 -6.0214 1.5533 14 16 0.1295 -6.6440 3.0865 15 6 -0.8214 -8.1530 3.4175 16 6 -0.3072 -8.8087 4.7006 17 1 0.7809 -8.8536 4.7464 18 6 -0.9551 -8.2517 5.9793 19 6 -0.9856 -9.7006 6.4987 20 1 -0.0837 -9.9903 7.0378 21 8 -2.1838 -10.0322 7.2032 22 6 -0.9932 -10.1458 5.0268 23 6 1.1867 -4.8064 0.3089 24 6 1.8280 -3.6504 -0.0735 25 1 -0.4850 0.8401 0.0004 26 1 -0.1428 -1.4095 1.5809 27 1 -1.2597 -3.4944 2.2430 28 1 -1.6726 -5.8221 1.7178 29 1 -0.5023 -6.7674 0.7665 30 1 -1.8750 -7.9000 3.5353 31 1 -0.7051 -8.8458 2.5840 32 1 -0.2988 -7.5956 6.5511 33 1 -1.9449 -7.8250 5.8171 34 1 -2.1850 -9.7548 8.1296 35 1 -1.9935 -10.2380 4.6037 36 1 -0.3677 -11.0167 4.8308 37 1 1.5484 -5.7626 -0.0394 38 1 2.6906 -3.6979 -0.7216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421217542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:28 Heat of formation + Delta-G solvation = -30.946190 kcal Electronic energy + Delta-G solvation = -17966.200161 eV Core-core repulsion = 15092.274101 eV Total energy + Delta-G solvation = -2873.926060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50532 -37.63424 -35.45250 -34.01990 -31.24098 -29.49127 -29.32684 -27.52545 -25.92276 -24.04609 -22.65218 -21.03728 -20.09120 -19.65668 -17.73914 -17.34821 -16.01566 -15.65969 -15.34051 -14.57658 -14.49760 -14.33505 -13.89517 -13.85457 -13.51483 -12.83814 -12.63390 -12.60054 -12.07427 -11.97205 -11.89519 -11.62603 -11.52765 -11.10837 -11.04139 -10.82177 -10.69917 -10.51050 -10.35107 -9.95741 -9.74802 -9.50491 -9.42395 -9.13769 -7.51190 -7.32907 -7.20167 -6.83409 -4.40093 1.88790 2.77393 3.02848 3.03241 3.05377 3.08237 3.40230 3.88192 3.95230 4.35587 4.41670 4.58133 4.61953 4.66952 5.09461 5.26837 5.46008 5.54538 5.58999 5.59774 5.63051 5.66265 5.79740 5.83119 5.96344 6.16627 6.23180 6.31305 6.36046 6.91243 7.00802 7.22328 7.30503 7.38719 7.56037 7.79272 7.99596 8.05438 8.23387 8.57671 8.82492 8.91158 10.10442 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.002829 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.515370 B = 9896.055130 C =10183.371937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.168 4.168 11 C -0.078 4.078 12 C -0.210 4.210 13 C -0.001 4.001 14 S -0.279 6.279 15 C -0.083 4.083 16 C -0.090 4.090 17 H 0.100 0.900 18 C -0.159 4.159 19 C 0.073 3.927 20 H 0.081 0.919 21 O -0.562 6.562 22 C -0.121 4.121 23 C -0.067 4.067 24 C -0.229 4.229 25 H 0.283 0.717 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.377 0.623 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -12.930 9.130 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.188 4.188 11 C -0.098 4.098 12 C -0.214 4.214 13 C -0.148 4.148 14 S -0.048 6.048 15 C -0.231 4.231 16 C -0.109 4.109 17 H 0.118 0.882 18 C -0.197 4.197 19 C 0.014 3.986 20 H 0.099 0.901 21 O -0.368 6.368 22 C -0.160 4.160 23 C -0.087 4.087 24 C -0.248 4.248 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.224 0.776 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.095 -12.650 9.150 15.752 hybrid contribution -0.501 0.529 -0.282 0.781 sum -2.596 -12.121 8.868 15.241 Atomic orbital electron populations 1.69824 1.07664 1.29544 1.34182 1.25958 0.94748 1.01473 0.92134 0.86345 0.80179 0.80021 0.80093 1.18913 1.20265 1.18705 1.19634 0.98317 0.91315 1.39366 0.90265 1.17662 0.90855 0.92038 0.88082 1.21281 0.99553 0.96717 1.01205 1.20512 0.98311 0.92483 0.98528 1.18392 1.02418 0.91298 1.09309 1.21970 1.00006 0.98701 0.94118 1.87341 1.52281 1.28699 1.36448 1.23283 1.01699 0.98218 0.99925 1.22030 1.00375 0.95345 0.93134 0.88229 1.23745 1.01992 0.96941 0.96988 1.23400 0.87440 0.95227 0.92491 0.90108 1.86517 1.39155 1.83409 1.27674 1.23142 1.01798 0.97141 0.93905 1.20357 0.94707 0.96560 0.97060 1.20949 1.03963 0.92769 1.07164 0.90650 0.86373 0.89359 0.91303 0.91364 0.90657 0.90597 0.90899 0.89149 0.77614 0.89145 0.90740 0.89329 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.07 10.98 55.55 0.61 -19.46 16 2 C 0.08 1.87 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.12 3.11 5.57 -106.82 -0.60 2.51 16 10 C -0.17 -4.36 8.71 -38.87 -0.34 -4.70 16 11 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 12 C -0.21 -4.62 5.16 -104.33 -0.54 -5.15 16 13 C 0.00 -0.03 6.06 36.01 0.22 0.19 16 14 S -0.28 -4.71 21.72 -107.50 -2.33 -7.04 16 15 C -0.08 -1.04 5.76 37.15 0.21 -0.83 16 16 C -0.09 -0.96 3.64 -89.80 -0.33 -1.29 16 17 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 18 C -0.16 -1.63 7.48 -25.82 -0.19 -1.82 16 19 C 0.07 0.66 5.21 -25.83 -0.13 0.52 16 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 21 O -0.56 -5.28 13.67 -35.23 -0.48 -5.76 16 22 C -0.12 -1.13 7.47 -25.92 -0.19 -1.33 16 23 C -0.07 -1.50 9.67 -39.66 -0.38 -1.89 16 24 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.07 1.17 8.08 -51.92 -0.42 0.75 16 29 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 30 H 0.07 0.93 7.88 -51.92 -0.41 0.52 16 31 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.38 1.91 9.12 45.56 0.42 2.33 16 35 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -28.25 332.10 -10.62 -38.87 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.92 Total: 7.60 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -3.47 Total: -32.56 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.61 Total: -19.46 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.48 Total: -5.76 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -2.33 Total: -7.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.25 -10.62 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421217542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.927 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds