Wall clock time and date at job start Mon Mar 30 2020 23:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48500 * 109.47085 * 239.99943 * 3 2 1 5 5 H 1.48497 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46882 * 120.00200 * 3 2 1 7 7 C 1.39945 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99544 * 161.79993 * 7 2 1 9 9 C 1.41392 * 120.00078 * 341.79352 * 7 2 1 10 10 C 1.40715 * 120.24412 * 335.49838 * 9 7 2 11 11 C 1.37623 * 119.74559 * 180.29869 * 10 9 7 12 12 C 1.38632 * 120.24602 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.75151 * 179.97438 * 12 11 10 14 14 S 1.81396 * 109.47199 * 270.02951 * 13 12 11 15 15 C 1.81408 * 103.00087 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47139 * 179.97438 * 15 14 13 17 17 H 1.09001 * 112.85585 * 314.67086 * 16 15 14 18 18 C 1.53792 * 113.61295 * 85.86704 * 16 15 14 19 19 C 1.53951 * 87.01786 * 139.94958 * 18 16 15 20 20 H 1.08997 * 113.61569 * 89.20230 * 19 18 16 21 21 O 1.42902 * 113.66304 * 220.06457 * 19 18 16 22 22 C 1.53776 * 87.11507 * 334.63624 * 19 18 16 23 23 C 1.38636 * 120.50296 * 0.02562 * 12 11 10 24 24 C 1.37617 * 120.25081 * 0.02562 * 23 12 11 25 25 H 0.97006 * 119.99913 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.13020 * 0.25837 * 10 9 7 27 27 H 1.07995 * 119.87216 * 179.97438 * 11 10 9 28 28 H 1.09005 * 109.46575 * 30.02234 * 13 12 11 29 29 H 1.08994 * 109.47617 * 150.02499 * 13 12 11 30 30 H 1.09003 * 109.46670 * 300.00164 * 15 14 13 31 31 H 1.09002 * 109.46850 * 59.99456 * 15 14 13 32 32 H 1.08999 * 113.61054 * 254.52793 * 18 16 15 33 33 H 1.08999 * 113.61515 * 25.42898 * 18 16 15 34 34 H 0.96701 * 114.00263 * 277.55984 * 21 19 18 35 35 H 1.09002 * 113.61544 * 270.81258 * 22 19 18 36 36 H 1.09002 * 113.61648 * 139.91383 * 22 19 18 37 37 H 1.08000 * 119.87830 * 179.97438 * 23 12 11 38 38 H 1.07998 * 120.13138 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0475 -1.2352 -0.2927 9 6 1.3541 -2.4060 0.3815 10 6 0.2287 -2.3591 1.2250 11 6 -0.3962 -3.5280 1.5954 12 6 0.0788 -4.7483 1.1403 13 6 -0.6137 -6.0214 1.5533 14 16 0.1295 -6.6440 3.0865 15 6 -0.8214 -8.1530 3.4175 16 6 -0.3072 -8.8087 4.7006 17 1 0.7809 -8.8536 4.7464 18 6 -0.9551 -8.2517 5.9793 19 6 -0.9856 -9.7006 6.4987 20 1 -0.0837 -9.9903 7.0378 21 8 -2.1838 -10.0322 7.2032 22 6 -0.9932 -10.1458 5.0268 23 6 1.1867 -4.8064 0.3089 24 6 1.8280 -3.6504 -0.0735 25 1 -0.4850 0.8401 0.0004 26 1 -0.1428 -1.4095 1.5809 27 1 -1.2597 -3.4944 2.2430 28 1 -1.6726 -5.8221 1.7178 29 1 -0.5023 -6.7674 0.7665 30 1 -1.8750 -7.9000 3.5353 31 1 -0.7051 -8.8458 2.5840 32 1 -0.2988 -7.5956 6.5511 33 1 -1.9449 -7.8250 5.8171 34 1 -2.1850 -9.7548 8.1296 35 1 -1.9935 -10.2380 4.6037 36 1 -0.3677 -11.0167 4.8308 37 1 1.5484 -5.7626 -0.0394 38 1 2.6906 -3.6979 -0.7216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421217542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:28 Heat of formation + Delta-G solvation = -45.866767 kcal Electronic energy + Delta-G solvation = -17966.847166 eV Core-core repulsion = 15092.274101 eV Total energy + Delta-G solvation = -2874.573065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26027 -39.48437 -36.17621 -35.85444 -33.01814 -31.21298 -30.43759 -29.26293 -26.67691 -25.78939 -23.54257 -22.92129 -21.84592 -20.47724 -19.24741 -18.46301 -17.33674 -17.05065 -16.50875 -16.03395 -15.78178 -15.66248 -15.33728 -15.23962 -14.77645 -14.30682 -13.93613 -13.83960 -13.44430 -13.40498 -13.38475 -12.96621 -12.76992 -12.64768 -12.46617 -12.29099 -11.93966 -11.74421 -11.54672 -11.30328 -11.25717 -11.02854 -10.77544 -10.64803 -9.39576 -9.19846 -8.67391 -8.54581 -6.35156 0.45494 1.11595 1.21014 1.37815 1.49333 1.56884 1.89232 2.19550 2.74446 3.30068 3.56248 3.64847 3.73532 3.83722 3.97721 4.13234 4.14988 4.30293 4.37456 4.50678 4.57087 4.58564 4.68884 4.78721 4.81809 4.85059 5.02234 5.03995 5.12882 5.19707 5.32786 5.42106 5.44345 5.67295 5.91684 6.07198 6.17328 6.34668 6.66345 6.90533 6.90901 6.99738 8.29400 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040306 B = 0.002829 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.515370 B = 9896.055130 C =10183.371937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.084 3.916 10 C -0.192 4.192 11 C -0.086 4.086 12 C -0.200 4.200 13 C 0.001 3.999 14 S -0.311 6.311 15 C -0.066 4.066 16 C -0.091 4.091 17 H 0.099 0.901 18 C -0.162 4.162 19 C 0.080 3.920 20 H 0.100 0.900 21 O -0.579 6.579 22 C -0.116 4.116 23 C -0.071 4.071 24 C -0.245 4.245 25 H 0.290 0.710 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.394 0.606 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 -14.715 9.948 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.211 4.211 11 C -0.106 4.106 12 C -0.203 4.203 13 C -0.146 4.146 14 S -0.081 6.081 15 C -0.214 4.214 16 C -0.111 4.111 17 H 0.117 0.883 18 C -0.200 4.200 19 C 0.021 3.979 20 H 0.118 0.882 21 O -0.387 6.387 22 C -0.155 4.155 23 C -0.090 4.090 24 C -0.265 4.265 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.242 -14.428 9.963 17.676 hybrid contribution -0.554 0.833 -0.432 1.089 sum -2.796 -13.595 9.531 16.837 Atomic orbital electron populations 1.69874 1.09065 1.30798 1.34913 1.26802 0.95511 1.04627 0.91108 0.85240 0.78820 0.75486 0.80118 1.18185 1.19042 1.18566 1.19870 0.98580 0.92581 1.41650 0.90461 1.18004 0.91714 0.93159 0.89029 1.21249 1.00498 0.96991 1.02396 1.20737 0.98656 0.92506 0.98657 1.18772 1.01528 0.92508 1.07521 1.21886 1.00123 0.97239 0.95343 1.87399 1.53367 1.31872 1.35441 1.23355 1.01017 0.95665 1.01368 1.22039 1.00462 0.96313 0.92252 0.88269 1.23747 1.01249 0.97967 0.97051 1.23392 0.88082 0.93799 0.92587 0.88186 1.86470 1.39463 1.83500 1.29294 1.23110 1.01571 0.96674 0.94139 1.20667 0.94598 0.97032 0.96736 1.21167 1.04612 0.93051 1.07625 0.89972 0.88099 0.87855 0.90198 0.89455 0.90182 0.89252 0.91203 0.90217 0.75563 0.89604 0.89190 0.86552 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.25 10.98 21.83 0.24 -43.01 16 2 C 0.04 1.78 5.13 85.26 0.44 2.22 16 3 Si 0.98 38.32 29.60 68.60 2.03 40.35 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.22 9.05 23.46 0.21 -27.01 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.08 4.63 5.57 -21.29 -0.12 4.51 16 10 C -0.19 -10.33 8.71 22.73 0.20 -10.13 16 11 C -0.09 -4.06 9.67 22.22 0.21 -3.85 16 12 C -0.20 -8.61 5.16 -19.68 -0.10 -8.71 16 13 C 0.00 0.03 6.06 71.24 0.43 0.46 16 14 S -0.31 -9.89 21.72 -56.49 -1.23 -11.11 16 15 C -0.07 -1.48 5.76 71.98 0.41 -1.07 16 16 C -0.09 -1.72 3.64 -10.27 -0.04 -1.76 16 17 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 18 C -0.16 -3.01 7.48 31.18 0.23 -2.77 16 19 C 0.08 1.22 5.21 31.18 0.16 1.38 16 20 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 21 O -0.58 -9.42 13.67 -148.98 -2.04 -11.46 16 22 C -0.12 -1.82 7.47 31.12 0.23 -1.59 16 23 C -0.07 -3.13 9.67 22.22 0.21 -2.92 16 24 C -0.24 -12.27 9.80 22.73 0.22 -12.05 16 25 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 26 H 0.10 5.67 6.17 -2.91 -0.02 5.66 16 27 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 29 H 0.09 2.62 8.08 -2.39 -0.02 2.60 16 30 H 0.08 1.75 7.88 -2.39 -0.02 1.73 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.65 7.92 -2.39 -0.02 1.63 16 34 H 0.39 3.06 9.12 -74.06 -0.68 2.39 16 35 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -62.17 332.10 2.10 -60.07 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.37 Total: 28.43 kcal Atomic # 6 Polarization: -65.99 SS G_CDS: 2.72 Total: -63.27 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.24 Total: -43.01 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -2.04 Total: -11.46 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -1.23 Total: -11.11 kcal Total: -62.17 2.10 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421217542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.207 kcal (2) G-P(sol) polarization free energy of solvation -62.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds