Wall clock time and date at job start Tue Mar 31 2020 00:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37957 * 120.07704 * 2 1 4 4 C 1.38356 * 120.15089 * 180.27246 * 3 2 1 5 5 C 1.50700 * 119.84572 * 179.72572 * 4 3 2 6 6 C 1.38406 * 120.31108 * 359.45621 * 4 3 2 7 7 N 1.48008 * 119.92713 * 180.25053 * 6 4 3 8 8 O 1.31704 * 119.99904 * 327.86850 * 7 6 4 9 9 O 1.31702 * 120.00191 * 147.86796 * 7 6 4 10 10 C 1.37910 * 120.15161 * 0.27022 * 6 4 3 11 11 C 1.39642 * 120.08006 * 179.72638 * 2 1 3 12 12 C 1.47701 * 120.15042 * 0.02562 * 11 2 1 13 13 O 1.21470 * 120.00259 * 300.36875 * 12 11 2 14 14 N 1.34773 * 119.99921 * 120.36554 * 12 11 2 15 15 C 1.46504 * 120.00236 * 4.92462 * 14 12 11 16 16 C 1.33336 * 119.99823 * 184.92205 * 14 12 11 17 17 H 1.07996 * 120.00043 * 2.91388 * 16 14 12 18 18 C 1.46782 * 119.99767 * 182.91092 * 16 14 12 19 19 N 1.29317 * 120.00437 * 5.57434 * 18 16 14 20 20 Si 1.86806 * 119.99751 * 185.57556 * 18 16 14 21 21 H 1.48494 * 109.47308 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47070 * 120.00226 * 20 18 16 23 23 H 1.48499 * 109.47154 * 239.99877 * 20 18 16 24 24 H 1.09002 * 109.47059 * 264.81083 * 1 2 3 25 25 H 1.09000 * 109.46831 * 24.80874 * 1 2 3 26 26 H 1.08998 * 109.47405 * 144.81536 * 1 2 3 27 27 H 1.08002 * 119.92230 * 0.02562 * 3 2 1 28 28 H 1.09003 * 109.47074 * 263.03964 * 5 4 3 29 29 H 1.09003 * 109.46913 * 23.03901 * 5 4 3 30 30 H 1.08996 * 109.46968 * 143.03897 * 5 4 3 31 31 H 1.08001 * 120.07930 * 180.02562 * 10 6 4 32 32 H 1.08994 * 109.46982 * 354.27030 * 15 14 12 33 33 H 1.09002 * 109.47147 * 114.26705 * 15 14 12 34 34 H 1.09001 * 109.47121 * 234.26713 * 15 14 12 35 35 H 0.97001 * 120.00246 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1938 0.0000 4 6 3.5820 1.1956 -0.0057 5 6 4.3302 2.5037 -0.0119 6 6 4.2821 0.0017 -0.0001 7 7 5.7621 0.0136 -0.0006 8 8 6.4126 0.9817 -0.6122 9 8 6.4286 -0.9440 0.6105 10 6 3.6038 -1.1991 0.0056 11 6 2.2069 -1.2083 0.0058 12 6 1.4736 -2.4904 0.0113 13 8 0.7100 -2.7495 0.9198 14 7 1.6515 -3.3729 -0.9917 15 6 2.6509 -3.1098 -2.0301 16 6 0.9181 -4.4854 -1.0388 17 1 0.1492 -4.6569 -0.3001 18 6 1.1557 -5.4769 -2.0947 19 7 2.1449 -5.3249 -2.9137 20 14 0.0291 -6.9583 -2.2556 21 1 -1.0190 -6.8995 -1.2052 22 1 -0.6121 -6.9494 -3.5950 23 1 0.8224 -8.2033 -2.0948 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3633 0.9328 -0.4312 26 1 -0.3634 -0.8399 -0.5921 27 1 1.6584 2.1291 0.0004 28 1 4.6146 2.7548 -1.0338 29 1 3.6914 3.2896 0.3910 30 1 5.2259 2.4128 0.6025 31 1 4.1512 -2.1300 0.0104 32 1 3.0747 -2.1165 -1.8832 33 1 3.4435 -3.8557 -1.9689 34 1 2.1781 -3.1617 -3.0109 35 1 2.3017 -5.9800 -3.6117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421754865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:06 Heat of formation + Delta-G solvation = 14.363941 kcal Electronic energy + Delta-G solvation = -21707.849182 eV Core-core repulsion = 18289.594702 eV Total energy + Delta-G solvation = -3418.254480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.93129 -40.42106 -39.18470 -36.88241 -35.75967 -34.69090 -34.25950 -33.46334 -29.96984 -28.91495 -28.13045 -26.84362 -25.78717 -23.91082 -22.73458 -21.34145 -19.52975 -19.32961 -18.98232 -17.84728 -17.65193 -16.66782 -16.65822 -16.43045 -16.09116 -15.62588 -15.07819 -15.06337 -14.52995 -14.17069 -13.97865 -13.83540 -13.44748 -13.30363 -13.18458 -13.05099 -12.89182 -12.74553 -12.66900 -12.51828 -12.28199 -12.15094 -12.11069 -11.83639 -11.18958 -10.60192 -10.37874 -10.26789 -10.02514 -8.57261 -5.84274 -1.79052 -0.35153 -0.12666 -0.04890 1.26079 1.37863 1.50712 1.75728 2.12445 2.21403 2.82046 2.90925 3.20427 3.30620 3.49951 3.60328 3.82158 3.87705 4.24557 4.30519 4.37691 4.47413 4.56856 4.64620 4.69196 4.72095 4.90967 4.93800 4.98501 5.08716 5.14282 5.21647 5.24788 5.41332 5.54522 5.80853 6.27936 7.00629 7.29638 7.96161 8.36831 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.005394 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.934411 B = 5190.150221 C = 6004.903659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.005 3.995 3 C -0.101 4.101 4 C -0.003 4.003 5 C -0.123 4.123 6 C -0.030 4.030 7 N -0.013 5.013 8 O -0.118 6.118 9 O -0.249 6.249 10 C -0.039 4.039 11 C -0.108 4.108 12 C 0.432 3.568 13 O -0.633 6.633 14 N -0.412 5.412 15 C 0.115 3.885 16 C -0.391 4.391 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.853 5.853 20 Si 1.001 2.999 21 H -0.270 1.270 22 H -0.260 1.260 23 H -0.268 1.268 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.046 0.954 27 H 0.206 0.794 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 15.006 -0.931 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.004 3.996 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.179 4.179 6 C -0.115 4.115 7 N 0.466 4.534 8 O -0.331 6.331 9 O -0.424 6.424 10 C -0.059 4.059 11 C -0.112 4.112 12 C 0.223 3.777 13 O -0.524 6.524 14 N -0.124 5.124 15 C -0.028 4.028 16 C -0.519 4.519 17 H 0.104 0.896 18 C -0.198 4.198 19 N -0.486 5.486 20 Si 0.822 3.178 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.193 1.193 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.066 0.934 27 H 0.223 0.777 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.000 14.547 -0.636 14.595 hybrid contribution 0.508 -1.636 -0.074 1.715 sum -0.492 12.911 -0.710 12.939 Atomic orbital electron populations 1.20948 0.88242 1.04266 1.03687 1.20748 0.98485 0.91054 0.89312 1.21403 0.90766 0.99177 1.00483 1.20353 0.94701 0.93758 0.91688 1.21225 0.99976 0.91329 1.05328 1.20166 0.75300 0.96981 1.19097 1.50559 1.05186 1.00502 0.97152 1.96161 1.71480 1.25135 1.40305 1.96328 1.70004 1.29055 1.46972 1.20921 0.93756 0.96853 0.94412 1.19856 0.91649 0.95339 1.04351 1.17812 0.88973 0.85800 0.85069 1.90532 1.44490 1.79134 1.38237 1.42775 1.31356 1.17389 1.20889 1.21829 0.91753 0.97897 0.91341 1.20646 1.18148 0.98223 1.14904 0.89585 1.27719 0.97394 1.01108 0.93624 1.69191 1.27054 1.36439 1.15959 0.84775 0.77914 0.76113 0.78953 1.19441 1.18468 1.19257 0.89688 0.86227 0.93448 0.77729 0.87369 0.86431 0.91764 0.85417 0.93134 0.92438 0.91816 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.15 71.24 0.65 -2.39 16 2 C 0.01 0.16 5.92 -19.59 -0.12 0.04 16 3 C -0.10 -1.97 9.29 22.23 0.21 -1.77 16 4 C 0.00 -0.07 5.88 -19.80 -0.12 -0.19 16 5 C -0.12 -1.87 8.52 71.24 0.61 -1.26 16 6 C -0.03 -0.94 6.60 36.34 0.24 -0.70 16 7 N -0.01 -0.45 4.71 -46.56 -0.22 -0.67 16 8 O -0.12 -3.64 17.07 3.51 0.06 -3.58 16 9 O -0.25 -9.95 19.56 3.51 0.07 -9.88 16 10 C -0.04 -1.45 7.15 22.54 0.16 -1.29 16 11 C -0.11 -4.18 4.69 -20.09 -0.09 -4.27 16 12 C 0.43 21.61 5.88 86.74 0.51 22.12 16 13 O -0.63 -35.95 16.08 -3.62 -0.06 -36.01 16 14 N -0.41 -21.55 2.93 -657.44 -1.92 -23.48 16 15 C 0.11 5.31 8.21 127.77 1.05 6.36 16 16 C -0.39 -21.85 9.77 86.70 0.85 -21.00 16 17 H 0.09 5.18 7.22 -2.91 -0.02 5.15 16 18 C 0.01 0.62 5.59 87.30 0.49 1.11 16 19 N -0.85 -42.14 9.59 23.26 0.22 -41.92 16 20 Si 1.00 39.80 29.65 68.60 2.03 41.84 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.12 1.89 8.05 -2.39 -0.02 1.87 16 26 H 0.05 1.60 7.27 -2.39 -0.02 1.58 16 27 H 0.21 1.77 8.05 -2.91 -0.02 1.75 16 28 H 0.11 1.46 8.04 -2.39 -0.02 1.44 16 29 H 0.12 0.91 8.03 -2.39 -0.02 0.89 16 30 H 0.06 1.19 6.77 -2.39 -0.02 1.18 16 31 H 0.13 5.24 7.62 -2.91 -0.02 5.22 16 32 H 0.05 2.05 4.82 -2.39 -0.01 2.04 16 33 H 0.06 2.82 7.10 -2.39 -0.02 2.80 16 34 H 0.06 3.02 7.04 -2.39 -0.02 3.00 16 35 H 0.29 12.97 8.26 -92.71 -0.77 12.20 16 Total: -1.00 -70.04 303.96 5.75 -64.29 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.13 Total: 12.64 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.43 Total: -3.23 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -1.92 Total: -66.07 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: 0.07 Total: -49.47 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.84 kcal Total: -70.04 5.75 -64.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421754865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.653 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds