Wall clock time and date at job start Tue Mar 31 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 120.07695 * 2 1 4 4 C 1.38333 * 120.15261 * 180.24847 * 3 2 1 5 5 C 1.50700 * 119.86049 * 179.76158 * 4 3 2 6 6 C 1.38386 * 120.28803 * 359.49034 * 4 3 2 7 7 N 1.48015 * 119.93013 * 180.25699 * 6 4 3 8 8 O 1.21807 * 119.99335 * 322.03146 * 7 6 4 9 9 O 1.21799 * 120.00210 * 142.03499 * 7 6 4 10 10 C 1.37939 * 120.14381 * 0.27228 * 6 4 3 11 11 C 1.39556 * 120.07568 * 179.76054 * 2 1 3 12 12 C 1.47851 * 120.14440 * 0.02711 * 11 2 1 13 13 O 1.21555 * 119.99952 * 352.98187 * 12 11 2 14 14 N 1.34773 * 120.00407 * 172.98275 * 12 11 2 15 15 C 1.46489 * 120.00289 * 179.97438 * 14 12 11 16 16 C 1.50709 * 109.47271 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99947 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47104 * 89.99935 * 20 18 16 22 22 H 1.48504 * 109.47160 * 210.00044 * 20 18 16 23 23 H 1.48497 * 109.47355 * 329.99565 * 20 18 16 24 24 H 1.09000 * 109.47360 * 263.46511 * 1 2 3 25 25 H 1.09000 * 109.47005 * 23.46671 * 1 2 3 26 26 H 1.09004 * 109.46514 * 143.46764 * 1 2 3 27 27 H 1.08009 * 119.92428 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47038 * 262.47298 * 5 4 3 29 29 H 1.09006 * 109.46499 * 22.47745 * 5 4 3 30 30 H 1.08998 * 109.46805 * 142.47131 * 5 4 3 31 31 H 1.08008 * 120.07262 * 180.02562 * 10 6 4 32 32 H 0.97007 * 119.99391 * 359.97438 * 14 12 11 33 33 H 1.09003 * 109.47646 * 300.00001 * 15 14 12 34 34 H 1.09005 * 109.47222 * 60.00139 * 15 14 12 35 35 H 0.97001 * 120.00007 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 -0.0052 5 6 4.3304 2.5037 -0.0106 6 6 4.2814 0.0018 0.0002 7 7 5.7615 0.0130 0.0004 8 8 6.3641 0.8464 -0.6523 9 8 6.3767 -0.8110 0.6530 10 6 3.6023 -1.1989 0.0052 11 6 2.2064 -1.2077 0.0050 12 6 1.4721 -2.4909 0.0098 13 8 0.2633 -2.4990 0.1380 14 7 2.1428 -3.6517 -0.1279 15 6 1.4152 -4.9232 -0.1226 16 6 2.3897 -6.0603 -0.2921 17 1 3.4454 -5.8562 -0.3932 18 6 1.9334 -7.3611 -0.3181 19 7 2.7837 -8.3534 -0.4665 20 14 0.1073 -7.7140 -0.1440 21 1 -0.5245 -7.7278 -1.4879 22 1 -0.0816 -9.0361 0.5055 23 1 -0.5236 -6.6588 0.6888 24 1 -0.3634 -0.1170 1.0210 25 1 -0.3633 0.9427 -0.4092 26 1 -0.3632 -0.8258 -0.6118 27 1 1.6585 2.1294 -0.0004 28 1 4.6239 2.7502 -1.0310 29 1 3.6881 3.2915 0.3832 30 1 5.2205 2.4154 0.6123 31 1 4.1495 -2.1301 0.0098 32 1 3.1074 -3.6452 -0.2306 33 1 0.8865 -5.0354 0.8239 34 1 0.6978 -4.9347 -0.9432 35 1 2.4627 -9.2686 -0.4844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421900690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:11 Heat of formation + Delta-G solvation = -19.523150 kcal Electronic energy + Delta-G solvation = -21042.344040 eV Core-core repulsion = 17622.620106 eV Total energy + Delta-G solvation = -3419.723934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.34091 -40.48854 -38.53576 -36.63912 -34.86723 -33.84522 -33.08780 -32.25171 -29.25292 -28.22955 -27.44071 -25.28590 -23.29819 -22.68760 -21.33408 -20.53318 -19.17751 -18.78581 -17.78633 -17.19374 -16.24858 -16.08501 -15.54263 -15.19726 -14.97294 -14.54367 -14.23438 -14.14387 -13.38201 -13.23604 -12.98438 -12.52432 -12.45458 -12.34455 -12.21238 -12.15111 -11.98910 -11.62494 -11.18769 -11.11105 -11.07063 -10.86620 -10.06014 -9.61314 -9.58339 -9.42559 -9.37506 -8.87638 -8.36873 -6.28669 -4.32675 -0.16747 0.38594 1.01098 1.27230 2.58059 3.20001 3.27084 3.33489 3.48925 3.54102 4.01184 4.04827 4.25479 4.34735 4.48947 4.75805 4.86462 5.02824 5.06005 5.13122 5.13782 5.35362 5.40404 5.55079 5.61106 5.65594 5.80083 5.98020 6.25103 6.35760 6.63406 6.91284 6.95217 7.23433 7.54416 7.92799 8.31427 8.52356 8.70726 9.29304 10.83114 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.004582 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.725860 B = 6108.909700 C = 7352.577970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.024 3.976 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.126 4.126 6 C -0.057 4.057 7 N 0.028 4.972 8 O -0.153 6.153 9 O -0.152 6.152 10 C -0.020 4.020 11 C -0.130 4.130 12 C 0.545 3.455 13 O -0.539 6.539 14 N -0.694 5.694 15 C 0.220 3.780 16 C -0.550 4.550 17 H 0.080 0.920 18 C 0.080 3.920 19 N -0.888 5.888 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.151 0.849 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.396 0.604 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 21.251 0.722 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.023 3.977 3 C -0.150 4.150 4 C -0.006 4.006 5 C -0.183 4.183 6 C -0.139 4.139 7 N 0.550 4.450 8 O -0.371 6.371 9 O -0.370 6.370 10 C -0.040 4.040 11 C -0.134 4.134 12 C 0.330 3.670 13 O -0.419 6.419 14 N -0.341 5.341 15 C 0.099 3.901 16 C -0.587 4.587 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.525 5.525 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.169 0.831 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.172 0.828 32 H 0.231 0.769 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.386 20.954 0.798 21.104 hybrid contribution 0.190 -0.470 0.033 0.508 sum -2.195 20.484 0.832 20.618 Atomic orbital electron populations 1.21234 0.88487 1.03872 1.04745 1.20486 0.98118 0.90982 0.88149 1.20978 0.91548 0.98769 1.03666 1.19873 0.94211 0.93854 0.92666 1.21067 1.00077 0.92455 1.04655 1.20684 0.79294 0.96261 1.17673 1.43535 1.03371 0.99552 0.98574 1.94513 1.69716 1.32672 1.40211 1.94599 1.68543 1.33610 1.40248 1.21151 0.93944 0.97054 0.91811 1.20041 0.91710 0.95378 1.06236 1.17911 0.87211 0.83343 0.78553 1.90704 1.13307 1.86898 1.51040 1.46222 1.11296 1.06552 1.70074 1.19603 0.93346 0.79919 0.97248 1.21050 0.95015 0.89593 1.53079 0.90154 1.24784 0.98160 0.95765 0.93747 1.69876 1.34663 0.99566 1.48385 0.86817 0.85227 0.78377 0.79254 1.19791 1.20766 1.18511 0.89434 0.91755 0.87507 0.83144 0.88519 0.90134 0.90737 0.82819 0.76888 0.95180 0.95689 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.71 36.01 0.31 -1.07 16 2 C 0.02 0.28 5.91 -104.23 -0.62 -0.34 16 3 C -0.13 -1.20 9.28 -39.64 -0.37 -1.57 16 4 C 0.00 -0.05 5.88 -104.53 -0.61 -0.66 16 5 C -0.13 -0.98 8.60 36.01 0.31 -0.67 16 6 C -0.06 -0.72 6.46 -80.00 -0.52 -1.24 16 7 N 0.03 0.39 4.12 33.94 0.14 0.53 16 8 O -0.15 -2.13 16.82 -29.46 -0.50 -2.62 16 9 O -0.15 -2.37 18.95 -29.46 -0.56 -2.93 16 10 C -0.02 -0.26 9.14 -39.18 -0.36 -0.62 16 11 C -0.13 -1.82 5.87 -104.97 -0.62 -2.44 16 12 C 0.54 9.69 7.69 -12.33 -0.09 9.60 16 13 O -0.54 -10.71 13.37 5.32 0.07 -10.64 16 14 N -0.69 -13.46 5.50 -62.43 -0.34 -13.80 16 15 C 0.22 5.17 4.50 -5.20 -0.02 5.15 16 16 C -0.55 -14.70 9.83 -34.44 -0.34 -15.03 16 17 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 20 Si 0.88 20.76 27.47 -169.99 -4.67 16.10 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 26 H 0.11 1.44 5.89 -51.93 -0.31 1.13 16 27 H 0.15 0.87 8.05 -52.48 -0.42 0.45 16 28 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.08 0.42 8.02 -51.93 -0.42 0.00 16 30 H 0.07 0.65 7.04 -51.93 -0.37 0.29 16 31 H 0.15 2.00 6.43 -52.48 -0.34 1.67 16 32 H 0.40 6.93 6.41 -40.82 -0.26 6.67 16 33 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 34 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -30.83 305.32 -7.22 -38.05 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.71 Total: 2.69 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.02 Total: -6.78 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.57 Total: -38.47 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.98 Total: -16.18 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.83 -7.22 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421900690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.528 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds