Wall clock time and date at job start Tue Mar 31 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 120.07695 * 2 1 4 4 C 1.38333 * 120.15261 * 180.24847 * 3 2 1 5 5 C 1.50700 * 119.86049 * 179.76158 * 4 3 2 6 6 C 1.38386 * 120.28803 * 359.49034 * 4 3 2 7 7 N 1.48015 * 119.93013 * 180.25699 * 6 4 3 8 8 O 1.21807 * 119.99335 * 322.03146 * 7 6 4 9 9 O 1.21799 * 120.00210 * 142.03499 * 7 6 4 10 10 C 1.37939 * 120.14381 * 0.27228 * 6 4 3 11 11 C 1.39556 * 120.07568 * 179.76054 * 2 1 3 12 12 C 1.47851 * 120.14440 * 0.02711 * 11 2 1 13 13 O 1.21555 * 119.99952 * 352.98187 * 12 11 2 14 14 N 1.34773 * 120.00407 * 172.98275 * 12 11 2 15 15 C 1.46489 * 120.00289 * 179.97438 * 14 12 11 16 16 C 1.50709 * 109.47271 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99846 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99947 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00098 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47104 * 89.99935 * 20 18 16 22 22 H 1.48504 * 109.47160 * 210.00044 * 20 18 16 23 23 H 1.48497 * 109.47355 * 329.99565 * 20 18 16 24 24 H 1.09000 * 109.47360 * 263.46511 * 1 2 3 25 25 H 1.09000 * 109.47005 * 23.46671 * 1 2 3 26 26 H 1.09004 * 109.46514 * 143.46764 * 1 2 3 27 27 H 1.08009 * 119.92428 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47038 * 262.47298 * 5 4 3 29 29 H 1.09006 * 109.46499 * 22.47745 * 5 4 3 30 30 H 1.08998 * 109.46805 * 142.47131 * 5 4 3 31 31 H 1.08008 * 120.07262 * 180.02562 * 10 6 4 32 32 H 0.97007 * 119.99391 * 359.97438 * 14 12 11 33 33 H 1.09003 * 109.47646 * 300.00001 * 15 14 12 34 34 H 1.09005 * 109.47222 * 60.00139 * 15 14 12 35 35 H 0.97001 * 120.00007 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1958 -0.0052 5 6 4.3304 2.5037 -0.0106 6 6 4.2814 0.0018 0.0002 7 7 5.7615 0.0130 0.0004 8 8 6.3641 0.8464 -0.6523 9 8 6.3767 -0.8110 0.6530 10 6 3.6023 -1.1989 0.0052 11 6 2.2064 -1.2077 0.0050 12 6 1.4721 -2.4909 0.0098 13 8 0.2633 -2.4990 0.1380 14 7 2.1428 -3.6517 -0.1279 15 6 1.4152 -4.9232 -0.1226 16 6 2.3897 -6.0603 -0.2921 17 1 3.4454 -5.8562 -0.3932 18 6 1.9334 -7.3611 -0.3181 19 7 2.7837 -8.3534 -0.4665 20 14 0.1073 -7.7140 -0.1440 21 1 -0.5245 -7.7278 -1.4879 22 1 -0.0816 -9.0361 0.5055 23 1 -0.5236 -6.6588 0.6888 24 1 -0.3634 -0.1170 1.0210 25 1 -0.3633 0.9427 -0.4092 26 1 -0.3632 -0.8258 -0.6118 27 1 1.6585 2.1294 -0.0004 28 1 4.6239 2.7502 -1.0310 29 1 3.6881 3.2915 0.3832 30 1 5.2205 2.4154 0.6123 31 1 4.1495 -2.1301 0.0098 32 1 3.1074 -3.6452 -0.2306 33 1 0.8865 -5.0354 0.8239 34 1 0.6978 -4.9347 -0.9432 35 1 2.4627 -9.2686 -0.4844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421900690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:11 Heat of formation + Delta-G solvation = -38.912078 kcal Electronic energy + Delta-G solvation = -21043.184807 eV Core-core repulsion = 17622.620106 eV Total energy + Delta-G solvation = -3420.564701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.41360 -41.64139 -39.78886 -37.75101 -36.48308 -34.81232 -34.70725 -33.65293 -30.62377 -29.41074 -28.56289 -26.38814 -24.55799 -24.07150 -22.48930 -21.89119 -20.49990 -19.87762 -18.98001 -18.79024 -17.74200 -17.36598 -16.62622 -16.47131 -16.37487 -16.01937 -15.27679 -15.22002 -14.79294 -14.40817 -14.37357 -13.87836 -13.65977 -13.28048 -13.21964 -13.11089 -12.99962 -12.89693 -12.73392 -12.71793 -12.30386 -12.12427 -11.94631 -11.72202 -10.95845 -10.85563 -10.47678 -10.35129 -10.00072 -8.43062 -6.52243 -1.19239 -0.60850 -0.00336 0.24660 1.32260 1.34092 1.45992 1.49062 2.13945 2.25920 2.29702 2.92260 3.11154 3.17726 3.43948 3.52184 3.78159 3.89559 4.20321 4.30751 4.44102 4.51549 4.60830 4.70844 4.77723 4.88370 4.95084 4.96124 5.00850 5.09094 5.19157 5.25152 5.35214 5.51481 6.00223 6.40410 6.46085 6.62115 7.02586 7.18126 8.71957 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.004582 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.725860 B = 6108.909700 C = 7352.577970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 C -0.109 4.109 4 C 0.008 3.992 5 C -0.128 4.128 6 C -0.073 4.073 7 N 0.029 4.971 8 O -0.126 6.126 9 O -0.208 6.208 10 C -0.025 4.025 11 C -0.149 4.149 12 C 0.547 3.453 13 O -0.560 6.560 14 N -0.702 5.702 15 C 0.233 3.767 16 C -0.555 4.555 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.932 5.932 20 Si 0.943 3.057 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.255 1.255 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.201 0.799 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.403 0.597 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 24.752 0.553 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.026 3.974 3 C -0.127 4.127 4 C 0.007 3.993 5 C -0.184 4.184 6 C -0.155 4.155 7 N 0.549 4.451 8 O -0.354 6.354 9 O -0.412 6.412 10 C -0.045 4.045 11 C -0.152 4.152 12 C 0.334 3.666 13 O -0.442 6.442 14 N -0.351 5.351 15 C 0.110 3.890 16 C -0.593 4.593 17 H 0.071 0.929 18 C -0.175 4.175 19 N -0.570 5.570 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.179 1.179 24 H 0.104 0.896 25 H 0.123 0.877 26 H 0.095 0.905 27 H 0.218 0.782 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.238 0.762 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.079 24.391 0.702 24.740 hybrid contribution 0.782 -1.356 0.013 1.565 sum -3.297 23.036 0.715 23.282 Atomic orbital electron populations 1.21212 0.87737 1.04855 1.04299 1.20735 0.98698 0.90811 0.87143 1.21431 0.90841 0.99456 1.00995 1.20350 0.94851 0.93879 0.90255 1.21220 1.00090 0.91764 1.05310 1.20832 0.78206 0.97160 1.19302 1.43740 1.04071 0.99159 0.98127 1.94469 1.70274 1.31811 1.38817 1.94616 1.69288 1.35024 1.42288 1.21029 0.93831 0.97341 0.92312 1.19684 0.91668 0.94386 1.09508 1.18389 0.87099 0.83956 0.77119 1.90694 1.14311 1.87438 1.51749 1.46082 1.11599 1.06115 1.71344 1.19197 0.92572 0.80753 0.96468 1.21276 0.94522 0.91000 1.52458 0.92897 1.25661 1.02874 0.95568 0.93359 1.69996 1.36955 1.00187 1.49866 0.85783 0.79488 0.78476 0.79711 1.18766 1.19922 1.17856 0.89576 0.87681 0.90491 0.78223 0.87383 0.86466 0.91929 0.83885 0.76161 0.96020 0.96059 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.71 71.24 0.62 -1.72 16 2 C 0.03 0.56 5.91 -19.61 -0.12 0.44 16 3 C -0.11 -1.45 9.28 22.23 0.21 -1.25 16 4 C 0.01 0.14 5.88 -19.81 -0.12 0.02 16 5 C -0.13 -1.39 8.60 71.24 0.61 -0.77 16 6 C -0.07 -1.76 6.46 36.34 0.23 -1.53 16 7 N 0.03 0.82 4.12 -46.55 -0.19 0.63 16 8 O -0.13 -3.30 16.82 18.88 0.32 -2.98 16 9 O -0.21 -6.74 18.95 18.89 0.36 -6.38 16 10 C -0.03 -0.68 9.14 22.53 0.21 -0.47 16 11 C -0.15 -4.10 5.87 -20.09 -0.12 -4.21 16 12 C 0.55 19.72 7.69 86.79 0.67 20.38 16 13 O -0.56 -22.34 13.37 -3.89 -0.05 -22.39 16 14 N -0.70 -28.24 5.50 -469.70 -2.58 -30.82 16 15 C 0.23 11.18 4.50 85.64 0.38 11.57 16 16 C -0.55 -30.72 9.83 25.60 0.25 -30.47 16 17 H 0.05 3.14 7.84 -2.91 -0.02 3.11 16 18 C 0.03 1.46 5.47 84.65 0.46 1.92 16 19 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 20 Si 0.94 43.15 27.47 68.60 1.88 45.04 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.10 1.09 8.04 -2.39 -0.02 1.07 16 26 H 0.08 1.97 5.89 -2.39 -0.01 1.96 16 27 H 0.20 0.77 8.05 -2.91 -0.02 0.74 16 28 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.12 0.47 8.02 -2.38 -0.02 0.45 16 30 H 0.06 0.89 7.04 -2.39 -0.02 0.87 16 31 H 0.14 4.03 6.43 -2.91 -0.02 4.01 16 32 H 0.40 14.98 6.41 -92.70 -0.59 14.39 16 33 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 34 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -69.58 305.32 3.82 -65.75 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.49 Total: 12.86 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 3.30 Total: -6.09 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.47 Total: -85.81 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: 0.62 Total: -31.75 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -69.58 3.82 -65.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421900690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.841 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds