Wall clock time and date at job start Tue Mar 31 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00395 * 2 1 4 4 O 1.20826 * 119.99838 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99904 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.36787 * 120.00137 * 270.00097 * 6 5 3 8 8 H 1.08000 * 119.99813 * 142.29674 * 7 6 5 9 9 C 1.39101 * 119.99851 * 322.28909 * 7 6 5 10 10 N 1.31328 * 119.99748 * 161.32829 * 9 7 6 11 11 Si 1.86801 * 120.00436 * 341.33281 * 9 7 6 12 12 H 1.48495 * 109.47324 * 95.36901 * 11 9 7 13 13 H 1.48491 * 109.47314 * 215.37422 * 11 9 7 14 14 H 1.48498 * 109.46665 * 335.37456 * 11 9 7 15 15 C 1.34777 * 119.99977 * 89.99969 * 6 5 3 16 16 O 1.21567 * 119.99922 * 4.47108 * 15 6 5 17 17 C 1.48000 * 120.00132 * 184.47080 * 15 6 5 18 18 N 1.32811 * 119.72909 * 284.55653 * 17 15 6 19 19 C 1.31504 * 121.63118 * 180.02562 * 18 17 15 20 20 C 1.38593 * 120.91110 * 0.02562 * 19 18 17 21 21 C 1.38625 * 119.36500 * 359.74756 * 20 19 18 22 22 C 1.38589 * 118.49529 * 0.51686 * 21 20 19 23 23 C 1.50701 * 120.46937 * 179.73668 * 22 21 20 24 24 H 1.09000 * 109.47818 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47102 * 300.00193 * 1 2 3 26 26 H 1.09000 * 109.46985 * 60.00025 * 1 2 3 27 27 H 1.09003 * 109.47151 * 60.00351 * 5 3 2 28 28 H 1.08999 * 109.47165 * 299.99368 * 5 3 2 29 29 H 0.96999 * 119.99420 * 185.01800 * 10 9 7 30 30 H 1.07999 * 119.54648 * 179.97438 * 19 18 17 31 31 H 1.07993 * 120.31626 * 179.97438 * 20 19 18 32 32 H 1.07993 * 120.75077 * 180.27637 * 21 20 19 33 33 H 1.08998 * 109.47430 * 264.79325 * 23 22 21 34 34 H 1.09001 * 109.46919 * 144.78846 * 23 22 21 35 35 H 1.09007 * 109.46996 * 24.79338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1753 3.3352 -1.1859 8 1 3.8850 4.3708 -1.2836 9 6 4.7461 2.6680 -2.2648 10 7 4.6053 3.1444 -3.4805 11 14 5.7127 1.0943 -1.9846 12 1 4.8243 -0.0767 -2.1959 13 1 6.8475 1.0335 -2.9404 14 1 6.2347 1.0750 -0.5945 15 6 4.1733 3.3260 1.1659 16 8 4.0808 2.7228 2.2173 17 6 4.4963 4.7704 1.1674 18 7 5.7175 5.1726 0.8346 19 6 6.0452 6.4461 0.8238 20 6 5.1211 7.4219 1.1624 21 6 3.8332 7.0465 1.5117 22 6 3.5170 5.6972 1.5200 23 6 2.1321 5.2392 1.8985 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7807 -0.8909 28 1 3.9564 0.7804 0.8892 29 1 4.9400 2.6423 -4.2399 30 1 7.0485 6.7355 0.5481 31 1 5.4007 8.4649 1.1507 32 1 3.0941 7.7885 1.7752 33 1 2.1120 4.9786 2.9567 34 1 1.8631 4.3660 1.3041 35 1 1.4193 6.0417 1.7084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426312680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:33 Heat of formation + Delta-G solvation = -61.714483 kcal Electronic energy + Delta-G solvation = -22290.437066 eV Core-core repulsion = 18868.883578 eV Total energy + Delta-G solvation = -3421.553488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.31260 -39.73462 -38.19639 -35.97177 -34.95409 -33.13411 -32.06630 -31.60829 -29.02880 -27.14290 -26.50071 -25.15775 -23.57049 -21.75239 -21.00822 -19.50140 -18.00474 -17.38419 -16.88223 -16.20514 -15.95420 -15.60296 -15.35587 -15.27974 -14.54319 -13.77871 -13.59959 -13.49130 -13.19733 -12.92252 -12.71088 -12.48996 -12.35629 -12.20052 -12.07260 -11.88523 -11.61600 -11.29997 -11.02074 -10.57184 -10.39266 -10.11790 -9.93439 -9.56765 -9.33049 -9.14227 -8.72503 -8.37068 -8.08529 -6.50553 -4.15516 1.44915 1.73124 2.77409 2.88396 2.95884 3.18106 3.22998 3.48781 3.97506 4.04741 4.33411 4.78741 5.05337 5.12868 5.28836 5.33469 5.36176 5.40864 5.43031 5.47572 5.60800 5.74666 5.76319 5.83967 6.01681 6.04932 6.13509 6.44649 6.52994 6.64707 6.80480 7.05554 7.09388 7.89352 8.13872 8.32018 8.46208 8.75913 9.11533 9.37889 10.58052 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.008622 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.321973 B = 3246.546214 C = 4353.570484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.451 3.549 4 O -0.487 6.487 5 C 0.106 3.894 6 N -0.431 5.431 7 C -0.333 4.333 8 H 0.105 0.895 9 C 0.068 3.932 10 N -0.854 5.854 11 Si 0.865 3.135 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.253 1.253 15 C 0.551 3.449 16 O -0.578 6.578 17 C 0.145 3.855 18 N -0.440 5.440 19 C 0.092 3.908 20 C -0.173 4.173 21 C -0.083 4.083 22 C -0.106 4.106 23 C -0.113 4.113 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.278 0.722 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 1.198 5.886 6.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.291 3.709 4 O -0.372 6.372 5 C -0.019 4.019 6 N -0.150 5.150 7 C -0.460 4.460 8 H 0.122 0.878 9 C -0.140 4.140 10 N -0.489 5.489 11 Si 0.692 3.308 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.176 1.176 15 C 0.339 3.661 16 O -0.461 6.461 17 C 0.005 3.995 18 N -0.150 5.150 19 C -0.067 4.067 20 C -0.193 4.193 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.170 4.170 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.908 0.573 5.951 6.648 hybrid contribution -0.362 0.054 -0.178 0.407 sum -3.270 0.627 5.773 6.664 Atomic orbital electron populations 1.23151 0.77387 1.02919 1.02308 1.86518 1.22769 1.34321 1.84855 1.24618 0.92640 0.81310 0.72333 1.90595 1.66524 1.36180 1.43936 1.21412 0.87167 0.87996 1.05349 1.43184 1.57141 1.08294 1.06428 1.18902 1.41079 0.98955 0.87066 0.87774 1.25332 0.95431 0.98410 0.94826 1.69619 1.42356 1.38812 0.98088 0.87095 0.80996 0.82425 0.80280 1.19648 1.20562 1.17620 1.17800 0.78996 0.85748 0.83536 1.90672 1.56435 1.67245 1.31761 1.20680 0.89723 0.94123 0.94969 1.67688 1.18564 1.18436 1.10287 1.22714 0.99682 0.87935 0.96402 1.22143 0.94507 1.00766 1.01873 1.21312 0.96627 0.94897 0.98054 1.20768 0.97053 0.93445 0.99605 1.20777 0.91578 1.02559 1.02122 0.88675 0.92277 0.92109 0.87589 0.86464 0.91189 0.82867 0.85146 0.85014 0.91029 0.89893 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.69 10.56 -39.25 -0.41 -7.10 16 3 C 0.45 9.74 8.02 36.01 0.29 10.03 16 4 O -0.49 -11.52 15.52 -18.75 -0.29 -11.81 16 5 C 0.11 2.38 4.79 -5.19 -0.02 2.35 16 6 N -0.43 -10.83 1.67 -117.12 -0.20 -11.03 16 7 C -0.33 -9.01 9.09 -15.02 -0.14 -9.15 16 8 H 0.10 3.08 7.47 -52.49 -0.39 2.69 16 9 C 0.07 1.82 5.36 -17.45 -0.09 1.73 16 10 N -0.85 -23.78 13.95 55.50 0.77 -23.00 16 11 Si 0.87 19.94 24.80 -169.99 -4.22 15.73 16 12 H -0.27 -5.77 6.73 56.52 0.38 -5.39 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.25 -5.84 7.09 56.52 0.40 -5.44 16 15 C 0.55 13.72 5.82 -12.26 -0.07 13.65 16 16 O -0.58 -14.89 16.66 5.31 0.09 -14.80 16 17 C 0.14 3.31 4.95 -83.02 -0.41 2.89 16 18 N -0.44 -9.70 10.22 -9.81 -0.10 -9.80 16 19 C 0.09 1.59 11.18 -17.56 -0.20 1.39 16 20 C -0.17 -2.55 10.12 -39.31 -0.40 -2.95 16 21 C -0.08 -1.31 9.83 -39.31 -0.39 -1.69 16 22 C -0.11 -2.06 5.93 -104.07 -0.62 -2.68 16 23 C -0.11 -2.03 9.55 36.01 0.34 -1.69 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 27 H 0.11 2.36 3.00 -51.93 -0.16 2.21 16 28 H 0.12 2.43 7.36 -51.93 -0.38 2.05 16 29 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.76 6.61 -51.93 -0.34 1.41 16 35 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -32.70 307.07 -4.17 -36.87 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.81 Total: 4.86 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -0.64 Total: 15.45 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: 0.48 Total: -43.83 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.62 Total: -33.71 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.22 Total: 15.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.70 -4.17 -36.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426312680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.841 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds