Wall clock time and date at job start Tue Mar 31 2020 01:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00395 * 2 1 4 4 O 1.20826 * 119.99838 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99904 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46897 * 179.97438 * 5 3 2 7 7 C 1.36787 * 120.00137 * 270.00097 * 6 5 3 8 8 H 1.08000 * 119.99813 * 142.29674 * 7 6 5 9 9 C 1.39101 * 119.99851 * 322.28909 * 7 6 5 10 10 N 1.31328 * 119.99748 * 161.32829 * 9 7 6 11 11 Si 1.86801 * 120.00436 * 341.33281 * 9 7 6 12 12 H 1.48495 * 109.47324 * 95.36901 * 11 9 7 13 13 H 1.48491 * 109.47314 * 215.37422 * 11 9 7 14 14 H 1.48498 * 109.46665 * 335.37456 * 11 9 7 15 15 C 1.34777 * 119.99977 * 89.99969 * 6 5 3 16 16 O 1.21567 * 119.99922 * 4.47108 * 15 6 5 17 17 C 1.48000 * 120.00132 * 184.47080 * 15 6 5 18 18 N 1.32811 * 119.72909 * 284.55653 * 17 15 6 19 19 C 1.31504 * 121.63118 * 180.02562 * 18 17 15 20 20 C 1.38593 * 120.91110 * 0.02562 * 19 18 17 21 21 C 1.38625 * 119.36500 * 359.74756 * 20 19 18 22 22 C 1.38589 * 118.49529 * 0.51686 * 21 20 19 23 23 C 1.50701 * 120.46937 * 179.73668 * 22 21 20 24 24 H 1.09000 * 109.47818 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47102 * 300.00193 * 1 2 3 26 26 H 1.09000 * 109.46985 * 60.00025 * 1 2 3 27 27 H 1.09003 * 109.47151 * 60.00351 * 5 3 2 28 28 H 1.08999 * 109.47165 * 299.99368 * 5 3 2 29 29 H 0.96999 * 119.99420 * 185.01800 * 10 9 7 30 30 H 1.07999 * 119.54648 * 179.97438 * 19 18 17 31 31 H 1.07993 * 120.31626 * 179.97438 * 20 19 18 32 32 H 1.07993 * 120.75077 * 180.27637 * 21 20 19 33 33 H 1.08998 * 109.47430 * 264.79325 * 23 22 21 34 34 H 1.09001 * 109.46919 * 144.78846 * 23 22 21 35 35 H 1.09007 * 109.46996 * 24.79338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 -0.0011 7 6 4.1753 3.3352 -1.1859 8 1 3.8850 4.3708 -1.2836 9 6 4.7461 2.6680 -2.2648 10 7 4.6053 3.1444 -3.4805 11 14 5.7127 1.0943 -1.9846 12 1 4.8243 -0.0767 -2.1959 13 1 6.8475 1.0335 -2.9404 14 1 6.2347 1.0750 -0.5945 15 6 4.1733 3.3260 1.1659 16 8 4.0808 2.7228 2.2173 17 6 4.4963 4.7704 1.1674 18 7 5.7175 5.1726 0.8346 19 6 6.0452 6.4461 0.8238 20 6 5.1211 7.4219 1.1624 21 6 3.8332 7.0465 1.5117 22 6 3.5170 5.6972 1.5200 23 6 2.1321 5.2392 1.8985 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9557 0.7807 -0.8909 28 1 3.9564 0.7804 0.8892 29 1 4.9400 2.6423 -4.2399 30 1 7.0485 6.7355 0.5481 31 1 5.4007 8.4649 1.1507 32 1 3.0941 7.7885 1.7752 33 1 2.1120 4.9786 2.9567 34 1 1.8631 4.3660 1.3041 35 1 1.4193 6.0417 1.7084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426312680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:32 Heat of formation + Delta-G solvation = -84.434634 kcal Electronic energy + Delta-G solvation = -22291.422286 eV Core-core repulsion = 18868.883578 eV Total energy + Delta-G solvation = -3422.538708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97602 -41.26029 -39.88014 -37.62900 -36.84385 -34.55118 -34.09110 -33.01649 -30.65692 -28.52390 -27.90832 -27.09188 -25.09908 -23.15710 -22.60045 -21.30728 -19.78031 -19.08884 -18.62913 -17.69032 -17.50563 -17.24952 -17.09933 -16.85401 -16.04408 -15.46128 -15.21584 -15.00297 -14.77057 -14.59233 -14.30159 -14.11393 -13.90184 -13.67117 -13.59629 -13.39275 -13.02318 -12.98411 -12.63471 -12.43295 -11.96992 -11.82587 -11.74436 -11.38115 -10.96830 -10.67003 -10.27279 -10.07200 -9.78921 -8.54561 -6.23660 0.04030 0.40540 1.05848 1.11560 1.21228 1.35184 1.40851 1.76179 2.09206 2.33248 2.83325 2.90984 3.53913 3.74216 3.84530 3.85727 3.91030 4.08630 4.11993 4.16256 4.30281 4.31081 4.56555 4.61763 4.64695 4.66189 4.76614 5.08542 5.12504 5.18289 5.25946 5.30312 5.78391 5.90688 6.03457 6.67118 6.75824 7.04309 7.10993 7.43531 8.58161 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.008622 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.321973 B = 3246.546214 C = 4353.570484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.453 3.547 4 O -0.515 6.515 5 C 0.096 3.904 6 N -0.441 5.441 7 C -0.329 4.329 8 H 0.065 0.935 9 C 0.027 3.973 10 N -0.894 5.894 11 Si 0.917 3.083 12 H -0.239 1.239 13 H -0.273 1.273 14 H -0.258 1.258 15 C 0.547 3.453 16 O -0.600 6.600 17 C 0.096 3.904 18 N -0.484 5.484 19 C 0.077 3.923 20 C -0.150 4.150 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.141 0.859 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.284 0.716 30 H 0.184 0.816 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 1.796 6.485 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.403 6.403 5 C -0.028 4.028 6 N -0.161 5.161 7 C -0.456 4.456 8 H 0.083 0.917 9 C -0.178 4.178 10 N -0.530 5.530 11 Si 0.740 3.260 12 H -0.164 1.164 13 H -0.199 1.199 14 H -0.182 1.182 15 C 0.337 3.663 16 O -0.484 6.484 17 C -0.042 4.042 18 N -0.194 5.194 19 C -0.083 4.083 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.159 0.841 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.094 0.906 30 H 0.201 0.799 31 H 0.201 0.799 32 H 0.194 0.806 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.083 1.138 6.548 7.327 hybrid contribution -0.372 -0.018 -0.311 0.485 sum -3.455 1.120 6.238 7.218 Atomic orbital electron populations 1.23589 0.74578 1.05975 1.02368 1.86481 1.25346 1.32035 1.84047 1.24341 0.92398 0.81893 0.71891 1.90587 1.67015 1.37313 1.45352 1.21506 0.88341 0.86848 1.06106 1.43212 1.57781 1.09161 1.05902 1.18509 1.41393 0.97800 0.87928 0.91699 1.25933 0.95793 1.01781 0.94256 1.69698 1.43717 1.40685 0.98907 0.86268 0.80079 0.79850 0.79774 1.16415 1.19939 1.18212 1.18343 0.77862 0.87033 0.83087 1.90611 1.57326 1.68271 1.32194 1.20578 0.91410 0.93472 0.98722 1.67552 1.18750 1.21263 1.11836 1.23395 1.01799 0.87063 0.95996 1.22697 0.93241 1.02679 0.98292 1.21852 0.98145 0.93849 0.96419 1.21054 0.96813 0.94909 0.99912 1.20723 0.91961 1.02050 1.01602 0.84079 0.91999 0.92391 0.87250 0.85120 0.90619 0.79878 0.79917 0.80565 0.90482 0.93930 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.81 10.56 -51.37 -0.54 -13.35 16 3 C 0.45 19.81 8.02 71.24 0.57 20.38 16 4 O -0.52 -25.09 15.52 21.96 0.34 -24.74 16 5 C 0.10 4.38 4.79 85.63 0.41 4.80 16 6 N -0.44 -22.94 1.67 -642.73 -1.08 -24.02 16 7 C -0.33 -18.54 9.09 84.13 0.77 -17.78 16 8 H 0.07 4.10 7.47 -2.91 -0.02 4.07 16 9 C 0.03 1.48 5.36 84.98 0.46 1.93 16 10 N -0.89 -50.97 13.95 21.69 0.30 -50.67 16 11 Si 0.92 41.15 24.80 68.60 1.70 42.85 16 12 H -0.24 -9.50 6.73 99.48 0.67 -8.83 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.26 -11.74 7.09 99.48 0.71 -11.04 16 15 C 0.55 28.37 5.82 86.83 0.51 28.87 16 16 O -0.60 -32.04 16.66 -3.93 -0.07 -32.11 16 17 C 0.10 4.52 4.95 41.86 0.21 4.73 16 18 N -0.48 -21.70 10.22 -184.95 -1.89 -23.59 16 19 C 0.08 2.54 11.18 84.83 0.95 3.49 16 20 C -0.15 -3.89 10.12 22.45 0.23 -3.66 16 21 C -0.08 -2.20 9.83 22.45 0.22 -1.98 16 22 C -0.12 -4.81 5.93 -19.51 -0.12 -4.93 16 23 C -0.11 -3.83 9.55 71.24 0.68 -3.15 16 24 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.11 4.83 3.00 -2.39 -0.01 4.82 16 28 H 0.13 5.49 7.36 -2.39 -0.02 5.47 16 29 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.18 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.04 1.87 6.61 -2.39 -0.02 1.86 16 35 H 0.10 2.77 8.06 -2.38 -0.02 2.75 16 Total: -1.00 -76.16 307.07 5.93 -70.23 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.08 Total: 20.78 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 6.07 Total: 34.62 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -2.66 Total: -98.28 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -0.27 Total: -70.21 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.70 Total: 42.85 kcal Total: -76.16 5.93 -70.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426312680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.202 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds