Wall clock time and date at job start Tue Mar 31 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99581 * 2 1 4 4 C 1.50697 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50694 * 109.47317 * 84.72916 * 4 3 2 6 6 O 1.21284 * 119.99896 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00385 * 179.72675 * 5 4 3 8 8 C 1.46499 * 120.00506 * 180.27198 * 7 5 4 9 9 C 1.50696 * 109.47505 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00282 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00524 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99946 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46935 * 89.99863 * 13 11 9 15 15 H 1.48497 * 109.47089 * 210.00159 * 13 11 9 16 16 H 1.48502 * 109.46799 * 330.00209 * 13 11 9 17 17 C 1.38212 * 119.99759 * 179.73003 * 3 2 1 18 18 C 1.38257 * 120.00376 * 0.27488 * 17 3 2 19 19 C 1.38215 * 119.99733 * 359.97438 * 18 17 3 20 20 C 1.38212 * 120.00387 * 180.19326 * 2 1 3 21 21 N 1.48019 * 119.99914 * 0.04072 * 20 2 1 22 22 O 1.21800 * 119.99573 * 186.67937 * 21 20 2 23 23 O 1.21790 * 119.99994 * 6.68171 * 21 20 2 24 24 H 1.09003 * 109.46875 * 96.79834 * 1 2 3 25 25 H 1.09001 * 109.47100 * 216.79080 * 1 2 3 26 26 H 1.08996 * 109.47721 * 336.79317 * 1 2 3 27 27 H 1.08998 * 109.47281 * 324.72048 * 4 3 2 28 28 H 1.09000 * 109.47044 * 204.72553 * 4 3 2 29 29 H 0.97006 * 120.00005 * 0.27041 * 7 5 4 30 30 H 1.09002 * 109.47247 * 299.99818 * 8 7 5 31 31 H 1.09003 * 109.46900 * 59.99246 * 8 7 5 32 32 H 0.96991 * 120.00405 * 179.97438 * 12 11 9 33 33 H 1.08001 * 120.00041 * 180.25549 * 17 3 2 34 34 H 1.07994 * 120.00362 * 179.97438 * 18 17 3 35 35 H 1.07996 * 119.99948 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 1.4446 2.5024 0.0006 5 6 1.0809 2.8719 1.4155 6 8 1.4016 2.1466 2.3332 7 7 0.4036 4.0107 1.6618 8 6 0.0552 4.3729 3.0379 9 6 -0.6931 5.6809 3.0391 10 1 -0.8899 6.1913 2.1079 11 6 -1.1265 6.2262 4.2290 12 7 -1.7791 7.3680 4.2301 13 14 -0.7867 5.3432 5.8397 14 1 0.5142 5.8011 6.3903 15 1 -1.8694 5.6478 6.8092 16 1 -0.7345 3.8786 5.5998 17 6 3.5803 1.1975 0.0056 18 6 4.2717 0.0002 0.0055 19 6 3.5807 -1.1968 0.0003 20 6 2.1981 -1.1969 -0.0040 21 7 1.4581 -2.4788 -0.0093 22 8 2.0609 -3.5304 0.1099 23 8 0.2465 -2.4820 -0.1328 24 1 -0.3633 -0.1217 -1.0205 25 1 -0.3633 -0.8230 0.6155 26 1 -0.3634 0.9444 0.4049 27 1 0.5362 2.3977 -0.5926 28 1 2.0711 3.2840 -0.4293 29 1 0.1468 4.5907 0.9279 30 1 -0.5729 3.5942 3.4707 31 1 0.9658 4.4750 3.6284 32 1 -2.0843 7.7514 5.0671 33 1 4.1203 2.1328 0.0098 34 1 5.3516 0.0002 0.0095 35 1 4.1208 -2.1320 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427607626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:13 Heat of formation + Delta-G solvation = -20.375240 kcal Electronic energy + Delta-G solvation = -20962.742600 eV Core-core repulsion = 17542.981716 eV Total energy + Delta-G solvation = -3419.760884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31696 -40.27247 -38.70260 -36.71751 -34.50382 -33.74224 -32.97373 -32.43687 -29.37688 -28.08250 -26.98205 -25.97527 -22.71333 -22.30002 -21.41141 -20.06030 -18.79958 -18.67085 -17.66630 -17.41129 -16.48026 -16.24485 -16.10840 -15.49183 -14.70085 -14.39380 -14.21398 -13.84106 -13.41823 -13.01808 -12.99067 -12.74325 -12.52133 -12.42368 -12.36876 -11.89468 -11.58044 -11.37281 -11.17587 -11.08941 -10.84186 -10.66699 -10.05108 -9.78789 -9.58655 -9.46917 -9.07647 -8.86439 -8.30927 -6.29067 -4.32229 -0.21451 0.74216 1.26282 1.35949 3.00103 3.02781 3.20808 3.28178 3.35722 3.84995 4.11155 4.20420 4.26375 4.43492 4.61530 4.69507 4.84342 5.06144 5.14264 5.16261 5.25798 5.36413 5.45499 5.48653 5.63052 5.81475 5.94574 5.99403 6.09302 6.48729 6.68936 6.95858 7.05984 7.28146 7.61904 8.00440 8.37673 8.63758 8.76327 9.30464 10.82744 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.003815 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.219001 B = 7338.157472 C = 7637.794209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 C -0.061 4.061 4 C -0.109 4.109 5 C 0.500 3.500 6 O -0.551 6.551 7 N -0.702 5.702 8 C 0.220 3.780 9 C -0.546 4.546 10 H 0.080 0.920 11 C 0.079 3.921 12 N -0.891 5.891 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.261 1.261 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.057 4.057 20 C -0.050 4.050 21 N 0.035 4.965 22 O -0.175 6.175 23 O -0.158 6.158 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.398 0.602 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.382 -12.470 -12.397 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.003 3.997 3 C -0.062 4.062 4 C -0.149 4.149 5 C 0.284 3.716 6 O -0.430 6.430 7 N -0.351 5.351 8 C 0.098 3.902 9 C -0.584 4.584 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.527 5.527 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.186 1.186 17 C -0.069 4.069 18 C -0.143 4.143 19 C -0.076 4.076 20 C -0.133 4.133 21 N 0.551 4.449 22 O -0.387 6.387 23 O -0.373 6.373 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.232 0.768 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.846 -12.233 -11.582 20.036 hybrid contribution -0.123 -0.283 0.621 0.694 sum 10.723 -12.516 -10.961 19.793 Atomic orbital electron populations 1.21354 0.88590 1.05189 1.04112 1.19671 0.98044 0.89978 0.91993 1.19251 0.93490 0.93219 1.00212 1.20792 1.02208 0.94769 0.97122 1.20248 0.79231 0.82084 0.90016 1.90700 1.54704 1.51385 1.46180 1.46193 1.55212 1.21914 1.11766 1.19519 0.95659 0.96444 0.78544 1.21064 1.37138 1.04487 0.95722 0.90182 1.24787 0.94011 0.94584 0.99121 1.69869 1.37246 1.17955 1.27680 0.86832 0.78499 0.81112 0.83339 1.19836 1.20777 1.18569 1.21502 0.93448 0.99263 0.92712 1.21102 1.00845 0.90782 1.01615 1.20986 0.90862 1.00766 0.94995 1.20876 0.92435 0.83031 1.16983 1.43557 1.01116 1.02758 0.97462 1.94514 1.70134 1.20210 1.53860 1.94478 0.96334 1.93811 1.52697 0.89279 0.88268 0.90466 0.87315 0.87335 0.76825 0.95625 0.96130 0.92160 0.84013 0.83631 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.06 36.00 0.29 -1.39 16 2 C 0.00 0.06 5.88 -104.62 -0.62 -0.56 16 3 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 4 C -0.11 -1.20 5.14 -29.04 -0.15 -1.35 16 5 C 0.50 8.39 7.10 -10.99 -0.08 8.31 16 6 O -0.55 -11.57 16.03 5.55 0.09 -11.48 16 7 N -0.70 -12.89 5.55 -61.48 -0.34 -13.23 16 8 C 0.22 5.16 4.50 -5.20 -0.02 5.14 16 9 C -0.55 -14.43 9.83 -34.44 -0.34 -14.77 16 10 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 13 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 17 C -0.05 -0.49 9.68 -39.58 -0.38 -0.87 16 18 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 19 C -0.06 -0.59 9.56 -39.58 -0.38 -0.97 16 20 C -0.05 -0.64 6.83 -79.95 -0.55 -1.19 16 21 N 0.04 0.51 4.45 33.96 0.15 0.66 16 22 O -0.18 -2.58 18.47 -29.46 -0.54 -3.12 16 23 O -0.16 -2.35 15.37 -29.46 -0.45 -2.80 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.10 1.35 5.89 -51.93 -0.31 1.04 16 26 H 0.08 0.97 5.85 -51.93 -0.30 0.67 16 27 H 0.11 0.98 6.88 -51.93 -0.36 0.62 16 28 H 0.11 0.87 8.05 -51.93 -0.42 0.46 16 29 H 0.40 6.23 8.32 -40.82 -0.34 5.89 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.15 1.28 7.63 -52.49 -0.40 0.88 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -33.07 306.30 -7.29 -40.36 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.74 Total: 1.94 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.17 Total: -8.19 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.58 Total: -37.64 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.91 Total: -17.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.07 -7.29 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.982 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds