Wall clock time and date at job start Tue Mar 31 2020 00:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99581 * 2 1 4 4 C 1.50697 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50694 * 109.47317 * 84.72916 * 4 3 2 6 6 O 1.21284 * 119.99896 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00385 * 179.72675 * 5 4 3 8 8 C 1.46499 * 120.00506 * 180.27198 * 7 5 4 9 9 C 1.50696 * 109.47505 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00282 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00524 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99946 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.46935 * 89.99863 * 13 11 9 15 15 H 1.48497 * 109.47089 * 210.00159 * 13 11 9 16 16 H 1.48502 * 109.46799 * 330.00209 * 13 11 9 17 17 C 1.38212 * 119.99759 * 179.73003 * 3 2 1 18 18 C 1.38257 * 120.00376 * 0.27488 * 17 3 2 19 19 C 1.38215 * 119.99733 * 359.97438 * 18 17 3 20 20 C 1.38212 * 120.00387 * 180.19326 * 2 1 3 21 21 N 1.48019 * 119.99914 * 0.04072 * 20 2 1 22 22 O 1.21800 * 119.99573 * 186.67937 * 21 20 2 23 23 O 1.21790 * 119.99994 * 6.68171 * 21 20 2 24 24 H 1.09003 * 109.46875 * 96.79834 * 1 2 3 25 25 H 1.09001 * 109.47100 * 216.79080 * 1 2 3 26 26 H 1.08996 * 109.47721 * 336.79317 * 1 2 3 27 27 H 1.08998 * 109.47281 * 324.72048 * 4 3 2 28 28 H 1.09000 * 109.47044 * 204.72553 * 4 3 2 29 29 H 0.97006 * 120.00005 * 0.27041 * 7 5 4 30 30 H 1.09002 * 109.47247 * 299.99818 * 8 7 5 31 31 H 1.09003 * 109.46900 * 59.99246 * 8 7 5 32 32 H 0.96991 * 120.00405 * 179.97438 * 12 11 9 33 33 H 1.08001 * 120.00041 * 180.25549 * 17 3 2 34 34 H 1.07994 * 120.00362 * 179.97438 * 18 17 3 35 35 H 1.07996 * 119.99948 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 1.4446 2.5024 0.0006 5 6 1.0809 2.8719 1.4155 6 8 1.4016 2.1466 2.3332 7 7 0.4036 4.0107 1.6618 8 6 0.0552 4.3729 3.0379 9 6 -0.6931 5.6809 3.0391 10 1 -0.8899 6.1913 2.1079 11 6 -1.1265 6.2262 4.2290 12 7 -1.7791 7.3680 4.2301 13 14 -0.7867 5.3432 5.8397 14 1 0.5142 5.8011 6.3903 15 1 -1.8694 5.6478 6.8092 16 1 -0.7345 3.8786 5.5998 17 6 3.5803 1.1975 0.0056 18 6 4.2717 0.0002 0.0055 19 6 3.5807 -1.1968 0.0003 20 6 2.1981 -1.1969 -0.0040 21 7 1.4581 -2.4788 -0.0093 22 8 2.0609 -3.5304 0.1099 23 8 0.2465 -2.4820 -0.1328 24 1 -0.3633 -0.1217 -1.0205 25 1 -0.3633 -0.8230 0.6155 26 1 -0.3634 0.9444 0.4049 27 1 0.5362 2.3977 -0.5926 28 1 2.0711 3.2840 -0.4293 29 1 0.1468 4.5907 0.9279 30 1 -0.5729 3.5942 3.4707 31 1 0.9658 4.4750 3.6284 32 1 -2.0843 7.7514 5.0671 33 1 4.1203 2.1328 0.0098 34 1 5.3516 0.0002 0.0095 35 1 4.1208 -2.1320 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427607626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:13 Heat of formation + Delta-G solvation = -42.160842 kcal Electronic energy + Delta-G solvation = -20963.687295 eV Core-core repulsion = 17542.981716 eV Total energy + Delta-G solvation = -3420.705578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.34639 -41.29692 -39.93522 -37.79214 -36.19645 -34.68019 -34.39134 -33.82533 -30.72801 -29.35801 -28.12605 -26.93242 -24.33812 -23.29788 -22.55464 -21.42503 -19.80194 -19.72872 -19.12491 -18.70054 -17.73298 -17.33583 -17.11153 -16.99287 -16.05705 -16.01083 -15.13622 -15.01497 -14.64666 -14.38527 -14.22696 -14.17963 -13.87778 -13.36305 -13.27497 -13.11308 -12.96988 -12.69629 -12.57273 -12.29912 -12.22799 -11.96701 -11.70180 -11.66151 -11.00653 -10.93109 -10.45565 -9.96098 -9.94735 -8.41153 -6.47747 -1.18755 -0.05770 0.31124 0.40542 1.30255 1.33945 1.44907 1.69704 2.15780 2.26091 2.62172 2.94642 3.22798 3.39472 3.68502 3.79680 3.96330 3.97519 4.10388 4.36587 4.42906 4.55359 4.56621 4.65285 4.79156 4.84455 4.99238 5.01583 5.03869 5.15772 5.25804 5.28134 5.50283 5.58896 6.07286 6.51755 6.54221 6.82671 7.14999 7.39900 8.73468 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.003815 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.219001 B = 7338.157472 C = 7637.794209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.013 4.013 3 C -0.078 4.078 4 C -0.096 4.096 5 C 0.501 3.499 6 O -0.594 6.594 7 N -0.703 5.703 8 C 0.232 3.768 9 C -0.545 4.545 10 H 0.063 0.937 11 C 0.028 3.972 12 N -0.930 5.930 13 Si 0.934 3.066 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.264 1.264 17 C -0.045 4.045 18 C -0.114 4.114 19 C -0.058 4.058 20 C -0.073 4.073 21 N 0.035 4.965 22 O -0.188 6.188 23 O -0.181 6.181 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.149 0.851 29 H 0.412 0.588 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.272 0.728 33 H 0.173 0.827 34 H 0.186 0.814 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 -12.455 -13.253 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.015 4.015 3 C -0.079 4.079 4 C -0.135 4.135 5 C 0.289 3.711 6 O -0.475 6.475 7 N -0.353 5.353 8 C 0.108 3.892 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.172 4.172 12 N -0.569 5.569 13 Si 0.758 3.242 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.188 1.188 17 C -0.063 4.063 18 C -0.132 4.132 19 C -0.077 4.077 20 C -0.157 4.157 21 N 0.546 4.454 22 O -0.398 6.398 23 O -0.392 6.392 24 H 0.124 0.876 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.167 0.833 29 H 0.248 0.752 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.191 0.809 34 H 0.203 0.797 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 13.068 -12.230 -12.480 21.820 hybrid contribution -0.742 -0.264 0.822 1.139 sum 12.326 -12.495 -11.658 21.070 Atomic orbital electron populations 1.21298 0.89073 1.03887 1.04709 1.19819 0.98096 0.90648 0.92896 1.19417 0.94600 0.92656 1.01267 1.20798 1.04066 0.95703 0.92911 1.21186 0.77396 0.80406 0.92123 1.90682 1.56105 1.52399 1.48356 1.46016 1.55976 1.23197 1.10132 1.19068 0.94418 0.94317 0.81423 1.21303 1.36632 1.05306 0.95049 0.91894 1.25556 0.94028 0.95222 1.02427 1.69969 1.38753 1.19485 1.28709 0.85918 0.78811 0.79714 0.79787 1.18908 1.20024 1.18822 1.21983 0.92744 1.01048 0.90510 1.21590 1.02686 0.89507 0.99396 1.21369 0.89848 1.02454 0.94076 1.21148 0.93442 0.82002 1.19121 1.43871 1.01108 1.03395 0.96995 1.94481 1.70025 1.21114 1.54225 1.94467 0.96994 1.94091 1.53697 0.87632 0.90235 0.91103 0.85139 0.83316 0.75211 0.97363 0.97045 0.91874 0.80921 0.79677 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.06 71.24 0.57 -2.69 16 2 C -0.01 -0.32 5.88 -19.87 -0.12 -0.44 16 3 C -0.08 -1.59 4.37 -19.87 -0.09 -1.68 16 4 C -0.10 -1.79 5.14 29.10 0.15 -1.64 16 5 C 0.50 15.90 7.10 87.66 0.62 16.52 16 6 O -0.59 -24.38 16.03 -3.04 -0.05 -24.42 16 7 N -0.70 -24.90 5.55 -466.80 -2.59 -27.49 16 8 C 0.23 10.77 4.50 85.63 0.38 11.16 16 9 C -0.54 -28.86 9.83 25.60 0.25 -28.61 16 10 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 11 C 0.03 1.55 5.47 84.65 0.46 2.02 16 12 N -0.93 -54.38 13.96 21.45 0.30 -54.08 16 13 Si 0.93 43.27 27.47 68.60 1.88 45.16 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 17 C -0.04 -0.67 9.68 22.27 0.22 -0.46 16 18 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 19 C -0.06 -1.07 9.56 22.27 0.21 -0.85 16 20 C -0.07 -1.83 6.83 36.37 0.25 -1.58 16 21 N 0.03 1.02 4.45 -46.46 -0.21 0.81 16 22 O -0.19 -5.55 18.47 18.89 0.35 -5.20 16 23 O -0.18 -5.57 15.37 18.90 0.29 -5.28 16 24 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.08 2.25 5.89 -2.39 -0.01 2.24 16 26 H 0.07 1.76 5.85 -2.39 -0.01 1.75 16 27 H 0.13 1.92 6.88 -2.39 -0.02 1.90 16 28 H 0.15 1.63 8.05 -2.39 -0.02 1.61 16 29 H 0.41 12.21 8.32 -92.70 -0.77 11.44 16 30 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 31 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 32 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.17 2.42 7.63 -2.91 -0.02 2.40 16 Total: -1.00 -73.47 306.30 3.43 -70.03 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.31 Total: 9.98 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 3.14 Total: -9.50 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.50 Total: -80.76 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: 0.59 Total: -34.91 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -73.47 3.43 -70.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.874 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds