Wall clock time and date at job start Mon Mar 30 2020 23:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47599 * 270.00176 * 3 2 1 5 5 H 1.48503 * 109.46946 * 30.00537 * 3 2 1 6 6 H 1.48498 * 109.47276 * 150.00226 * 3 2 1 7 7 C 1.37881 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00089 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47408 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00415 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00416 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.34780 * 119.99813 * 179.97438 * 14 13 11 16 16 O 1.21552 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.47856 * 119.99733 * 179.97438 * 15 14 13 18 18 C 1.39605 * 120.11992 * 359.97438 * 17 15 14 19 19 C 1.37963 * 119.96697 * 180.02562 * 18 17 15 20 20 C 1.38298 * 120.20542 * 359.72224 * 19 18 17 21 21 C 1.38807 * 120.23477 * 0.55088 * 20 19 18 22 22 O 1.35915 * 119.98280 * 179.72838 * 21 20 19 23 23 C 1.38493 * 120.03360 * 359.45005 * 21 20 19 24 24 H 0.96995 * 119.99616 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47183 * 60.00157 * 9 7 2 26 26 H 1.09003 * 109.47464 * 300.00010 * 9 7 2 27 27 H 0.97003 * 119.99367 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47442 * 59.99664 * 13 11 10 29 29 H 1.09003 * 109.46696 * 300.00039 * 13 11 10 30 30 H 0.96997 * 119.99952 * 0.02562 * 14 13 11 31 31 H 1.08000 * 120.01627 * 359.97438 * 18 17 15 32 32 H 1.07994 * 119.89925 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.88277 * 180.29920 * 20 19 18 34 34 H 0.96705 * 113.99582 * 269.72538 * 22 21 20 35 35 H 1.08006 * 120.10478 * 180.25071 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1131 -1.8999 -0.0014 13 6 5.8272 -4.2425 -0.0014 14 7 7.2922 -4.2425 -0.0018 15 6 7.9660 -5.4098 -0.0018 16 8 7.3582 -6.4624 -0.0009 17 6 9.4446 -5.4098 -0.0028 18 6 10.1451 -4.2022 -0.0044 19 6 11.5248 -4.2059 -0.0059 20 6 12.2174 -5.4029 0.0000 21 6 11.5294 -6.6085 -0.0041 22 8 12.2153 -7.7819 -0.0039 23 6 10.1445 -6.6163 -0.0026 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6806 0.8888 26 1 3.8746 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0010 28 1 5.4640 -4.7561 -0.8916 29 1 5.4637 -4.7566 0.8884 30 1 7.7772 -3.4025 -0.0014 31 1 9.6074 -3.2656 -0.0053 32 1 12.0656 -3.2711 -0.0067 33 1 13.2973 -5.3997 0.0037 34 1 12.4128 -8.1222 -0.8873 35 1 9.6080 -7.5538 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427607812.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:45 Heat of formation + Delta-G solvation = -90.793589 kcal Electronic energy + Delta-G solvation = -20012.108313 eV Core-core repulsion = 16589.293860 eV Total energy + Delta-G solvation = -3422.814453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62774 -39.54427 -38.71498 -36.85495 -34.84453 -34.26392 -32.47937 -31.63864 -30.34119 -28.92850 -26.94179 -24.03908 -22.87916 -22.10057 -20.76117 -20.23003 -19.18884 -17.67989 -17.02152 -16.67716 -16.42516 -15.85287 -15.69406 -15.62192 -15.24807 -14.86893 -14.59704 -14.18237 -14.09346 -13.55477 -13.10306 -12.85809 -12.62137 -12.51706 -12.41183 -12.05822 -11.98610 -11.13541 -11.08983 -10.84622 -10.18481 -10.05132 -9.60252 -9.52131 -9.46900 -9.24510 -9.08228 -8.86173 -8.34231 -6.27614 -4.30928 0.44833 0.86594 2.55082 2.81897 2.93624 3.21412 3.28587 3.35104 3.43069 3.78515 3.86060 4.26926 4.38872 4.49016 4.74188 4.76476 5.04566 5.07150 5.11624 5.27189 5.36992 5.41952 5.50224 5.88707 5.93842 5.94818 6.14565 6.30067 6.66971 6.95126 7.00804 7.22456 7.27069 7.35205 7.93863 8.03699 8.36726 8.58967 8.74086 9.31121 10.84217 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.002806 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.045467 B = 9977.461046 C =10597.482037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.496 3.504 12 O -0.559 6.559 13 C 0.098 3.902 14 N -0.708 5.708 15 C 0.559 3.441 16 O -0.538 6.538 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.109 4.109 20 C -0.121 4.121 21 C 0.095 3.905 22 O -0.496 6.496 23 C -0.086 4.086 24 H 0.268 0.732 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.401 0.599 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.412 0.588 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.392 0.608 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.974 -10.918 -1.658 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.280 3.720 12 O -0.439 6.439 13 C -0.029 4.029 14 N -0.363 5.363 15 C 0.346 3.654 16 O -0.416 6.416 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.140 4.140 21 C 0.051 3.949 22 O -0.307 6.307 23 C -0.105 4.105 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.235 0.765 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.248 0.752 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.820 -10.784 -1.044 25.262 hybrid contribution 0.193 0.912 -0.508 1.062 sum 23.013 -9.872 -1.552 25.089 Atomic orbital electron populations 1.69877 1.06220 1.27524 1.49058 1.24802 0.94811 0.99198 0.93806 0.86805 0.80516 0.83224 0.79043 1.19825 1.20839 1.18551 1.21070 0.88356 0.95357 1.53701 0.90101 1.19559 0.95463 0.78147 0.96999 1.46127 1.05304 1.11602 1.71350 1.20364 0.83804 0.90247 0.77598 1.90638 1.55431 1.45925 1.51895 1.21156 0.81033 0.95792 1.04941 1.45611 1.06656 1.09451 1.74602 1.18163 0.87030 0.83603 0.76613 1.90785 1.69735 1.31114 1.49956 1.19774 0.92789 0.93950 1.05250 1.21478 0.94775 0.97437 0.97453 1.21028 0.93819 0.98136 0.99763 1.21653 1.00889 0.91875 0.99586 1.18326 0.89534 0.85588 1.01488 1.84856 1.75704 1.36366 1.33739 1.21546 0.93228 0.98646 0.97087 0.92163 0.95452 0.95902 0.76479 0.88249 0.88244 0.74889 0.84791 0.84669 0.84910 0.75212 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.55 -14.54 9.83 -34.44 -0.34 -14.88 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.15 4.50 -5.19 -0.02 5.13 16 10 N -0.70 -13.10 5.55 -61.47 -0.34 -13.44 16 11 C 0.50 8.56 7.90 -10.99 -0.09 8.48 16 12 O -0.56 -11.23 15.67 5.55 0.09 -11.14 16 13 C 0.10 1.33 6.15 -5.20 -0.03 1.29 16 14 N -0.71 -9.23 5.48 -62.43 -0.34 -9.57 16 15 C 0.56 7.52 7.77 -12.32 -0.10 7.42 16 16 O -0.54 -8.71 16.35 5.32 0.09 -8.63 16 17 C -0.11 -1.28 5.87 -104.99 -0.62 -1.89 16 18 C -0.09 -0.85 9.54 -39.17 -0.37 -1.22 16 19 C -0.11 -0.82 10.03 -39.66 -0.40 -1.22 16 20 C -0.12 -0.92 9.98 -39.35 -0.39 -1.31 16 21 C 0.10 0.85 6.70 -39.28 -0.26 0.58 16 22 O -0.50 -3.83 13.50 -19.47 -0.26 -4.09 16 23 C -0.09 -0.90 9.53 -39.02 -0.37 -1.28 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 27 H 0.40 6.61 8.32 -40.82 -0.34 6.27 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.41 5.11 5.47 -40.82 -0.22 4.88 16 31 H 0.13 1.08 6.40 -52.49 -0.34 0.75 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.39 1.08 9.06 45.56 0.41 1.50 16 35 H 0.14 1.55 7.65 -52.48 -0.40 1.15 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -33.94 312.21 -5.98 -39.91 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.92 Total: 8.11 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.09 Total: 3.17 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.09 Total: -48.18 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.09 Total: -23.86 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.94 -5.98 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607812.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.882 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds