Wall clock time and date at job start Mon Mar 30 2020 23:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48500 * 109.47599 * 270.00176 * 3 2 1 5 5 H 1.48503 * 109.46946 * 30.00537 * 3 2 1 6 6 H 1.48498 * 109.47276 * 150.00226 * 3 2 1 7 7 C 1.37881 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00089 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47408 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00415 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00416 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47289 * 179.97438 * 13 11 10 15 15 C 1.34780 * 119.99813 * 179.97438 * 14 13 11 16 16 O 1.21552 * 119.99850 * 359.97438 * 15 14 13 17 17 C 1.47856 * 119.99733 * 179.97438 * 15 14 13 18 18 C 1.39605 * 120.11992 * 359.97438 * 17 15 14 19 19 C 1.37963 * 119.96697 * 180.02562 * 18 17 15 20 20 C 1.38298 * 120.20542 * 359.72224 * 19 18 17 21 21 C 1.38807 * 120.23477 * 0.55088 * 20 19 18 22 22 O 1.35915 * 119.98280 * 179.72838 * 21 20 19 23 23 C 1.38493 * 120.03360 * 359.45005 * 21 20 19 24 24 H 0.96995 * 119.99616 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47183 * 60.00157 * 9 7 2 26 26 H 1.09003 * 109.47464 * 300.00010 * 9 7 2 27 27 H 0.97003 * 119.99367 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47442 * 59.99664 * 13 11 10 29 29 H 1.09003 * 109.46696 * 300.00039 * 13 11 10 30 30 H 0.96997 * 119.99952 * 0.02562 * 14 13 11 31 31 H 1.08000 * 120.01627 * 359.97438 * 18 17 15 32 32 H 1.07994 * 119.89925 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.88277 * 180.29920 * 20 19 18 34 34 H 0.96705 * 113.99582 * 269.72538 * 22 21 20 35 35 H 1.08006 * 120.10478 * 180.25071 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1131 -1.8999 -0.0014 13 6 5.8272 -4.2425 -0.0014 14 7 7.2922 -4.2425 -0.0018 15 6 7.9660 -5.4098 -0.0018 16 8 7.3582 -6.4624 -0.0009 17 6 9.4446 -5.4098 -0.0028 18 6 10.1451 -4.2022 -0.0044 19 6 11.5248 -4.2059 -0.0059 20 6 12.2174 -5.4029 0.0000 21 6 11.5294 -6.6085 -0.0041 22 8 12.2153 -7.7819 -0.0039 23 6 10.1445 -6.6163 -0.0026 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6806 0.8888 26 1 3.8746 -0.6801 -0.8911 27 1 3.3694 -3.3126 -0.0010 28 1 5.4640 -4.7561 -0.8916 29 1 5.4637 -4.7566 0.8884 30 1 7.7772 -3.4025 -0.0014 31 1 9.6074 -3.2656 -0.0053 32 1 12.0656 -3.2711 -0.0067 33 1 13.2973 -5.3997 0.0037 34 1 12.4128 -8.1222 -0.8873 35 1 9.6080 -7.5538 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427607812.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:44 Heat of formation + Delta-G solvation = -118.912405 kcal Electronic energy + Delta-G solvation = -20013.327636 eV Core-core repulsion = 16589.293860 eV Total energy + Delta-G solvation = -3424.033776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57106 -40.67376 -39.80037 -37.51195 -36.37707 -35.59437 -34.45377 -32.39521 -31.16895 -30.41291 -28.35343 -25.00688 -23.92064 -23.47544 -21.72086 -21.68201 -20.13974 -19.07215 -18.23523 -17.73305 -17.47007 -17.05148 -16.92377 -16.78207 -16.17479 -16.05209 -15.90502 -15.62080 -14.90374 -14.73931 -14.57057 -14.45053 -14.12389 -13.60433 -13.23715 -13.17754 -13.08397 -12.70602 -12.69116 -11.92828 -11.78442 -11.66623 -11.19154 -11.04850 -10.92022 -10.43646 -10.07087 -9.98963 -9.75011 -8.39415 -6.47260 -0.28817 0.21495 1.34487 1.36834 1.48136 1.51832 1.68922 1.73349 2.28645 2.48694 2.69311 2.96083 3.21762 3.54266 3.72902 3.87411 4.07213 4.14122 4.28491 4.32462 4.41792 4.67849 4.74767 4.89363 5.02263 5.09232 5.18207 5.24907 5.30894 5.31671 5.41051 5.70809 6.05440 6.32821 6.53399 6.70035 6.80837 6.98964 7.10495 7.26129 8.75327 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.002806 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.045467 B = 9977.461046 C =10597.482037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.024 3.976 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.232 3.768 10 N -0.698 5.698 11 C 0.502 3.498 12 O -0.584 6.584 13 C 0.108 3.892 14 N -0.706 5.706 15 C 0.560 3.440 16 O -0.572 6.572 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.103 4.103 20 C -0.114 4.114 21 C 0.095 3.905 22 O -0.507 6.507 23 C -0.103 4.103 24 H 0.272 0.728 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.412 0.588 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.413 0.587 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.669 -10.369 -1.783 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.177 4.177 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.108 3.892 10 N -0.347 5.347 11 C 0.289 3.711 12 O -0.465 6.465 13 C -0.019 4.019 14 N -0.361 5.361 15 C 0.349 3.651 16 O -0.453 6.453 17 C -0.137 4.137 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.132 4.132 21 C 0.050 3.950 22 O -0.320 6.320 23 C -0.122 4.122 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.248 0.752 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.256 0.744 31 H 0.160 0.840 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.272 0.728 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 25.536 -10.263 -1.185 27.547 hybrid contribution -0.578 0.643 -0.479 0.988 sum 24.958 -9.620 -1.664 26.800 Atomic orbital electron populations 1.69991 1.07847 1.28651 1.50629 1.25653 0.95559 1.02886 0.93573 0.85809 0.79322 0.79012 0.79449 1.18965 1.20171 1.17955 1.21306 0.90082 0.94593 1.52738 0.92330 1.19167 0.93283 0.80536 0.96215 1.45939 1.06397 1.10273 1.72086 1.20839 0.82740 0.91501 0.76055 1.90625 1.55902 1.47254 1.52732 1.21088 0.81504 0.92936 1.06373 1.45605 1.06347 1.09668 1.74462 1.18528 0.88056 0.82948 0.75591 1.90759 1.70636 1.32159 1.51750 1.19660 0.91355 0.95108 1.07546 1.21629 0.95719 0.96851 0.97273 1.21383 0.93132 0.99435 0.98163 1.21973 1.02230 0.91148 0.97883 1.18397 0.88936 0.86575 1.01066 1.84802 1.75302 1.36139 1.35759 1.21549 0.94229 0.98014 0.98434 0.91875 0.96341 0.96404 0.75179 0.86714 0.86841 0.74415 0.84015 0.81707 0.82281 0.72776 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 13.96 21.45 0.30 -54.67 16 2 C 0.02 1.30 5.47 84.66 0.46 1.76 16 3 Si 0.94 42.59 27.47 68.60 1.88 44.48 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -11.25 6.54 99.48 0.65 -10.60 16 7 C -0.55 -29.39 9.83 25.60 0.25 -29.14 16 8 H 0.06 3.31 7.84 -2.91 -0.02 3.29 16 9 C 0.23 10.69 4.50 85.63 0.38 11.08 16 10 N -0.70 -25.73 5.55 -466.79 -2.59 -28.32 16 11 C 0.50 16.75 7.90 87.66 0.69 17.45 16 12 O -0.58 -22.73 15.67 -3.05 -0.05 -22.77 16 13 C 0.11 2.78 6.15 85.63 0.53 3.30 16 14 N -0.71 -17.69 5.48 -469.70 -2.57 -20.26 16 15 C 0.56 14.88 7.77 86.79 0.67 15.56 16 16 O -0.57 -18.67 16.35 -3.88 -0.06 -18.73 16 17 C -0.13 -2.90 5.87 -20.10 -0.12 -3.01 16 18 C -0.10 -1.58 9.54 22.53 0.21 -1.36 16 19 C -0.10 -1.23 10.03 22.22 0.22 -1.01 16 20 C -0.11 -1.38 9.98 22.42 0.22 -1.15 16 21 C 0.09 1.53 6.70 22.47 0.15 1.68 16 22 O -0.51 -6.92 13.50 -92.59 -1.25 -8.17 16 23 C -0.10 -2.13 9.53 22.63 0.22 -1.92 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 25 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 26 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 27 H 0.41 13.34 8.32 -92.71 -0.77 12.57 16 28 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.42 9.81 5.47 -92.71 -0.51 9.30 16 31 H 0.14 2.03 6.40 -2.91 -0.02 2.01 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.41 1.51 9.06 -74.05 -0.67 0.84 16 35 H 0.13 2.93 7.65 -2.91 -0.02 2.91 16 Total: -1.00 -72.71 312.21 -1.28 -73.99 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.84 Total: 21.23 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 3.90 Total: 13.24 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -4.86 Total: -103.26 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.36 Total: -49.68 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Total: -72.71 -1.28 -73.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607812.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.923 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds