Wall clock time and date at job start Mon Mar 30 2020 23:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47026 * 300.00504 * 3 2 1 6 6 H 1.48499 * 109.46680 * 60.00027 * 3 2 1 7 7 C 1.37880 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99991 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.53007 * 109.47280 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47280 * 180.02562 * 14 13 11 16 16 C 1.38257 * 120.00171 * 270.02305 * 15 14 13 17 17 C 1.38217 * 120.00124 * 179.97438 * 16 15 14 18 18 C 1.38258 * 119.99907 * 359.76573 * 17 16 15 19 19 C 1.38216 * 119.99766 * 0.46893 * 18 17 16 20 20 N 1.48026 * 119.99744 * 179.78745 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.72731 * 20 19 18 22 22 O 1.21802 * 120.00016 * 359.44228 * 20 19 18 23 23 C 1.38215 * 120.00134 * 89.99890 * 15 14 13 24 24 H 0.97000 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46773 * 60.00124 * 9 7 2 26 26 H 1.09000 * 109.46881 * 300.00244 * 9 7 2 27 27 H 0.96997 * 120.00735 * 359.97438 * 10 9 7 28 28 H 1.09008 * 109.47072 * 60.00287 * 13 11 10 29 29 H 1.09000 * 109.47483 * 300.00110 * 13 11 10 30 30 H 1.09000 * 109.47061 * 60.00136 * 14 13 11 31 31 H 1.09000 * 109.46981 * 300.00452 * 14 13 11 32 32 H 1.08001 * 120.00180 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.99804 * 179.97438 * 17 16 15 34 34 H 1.07996 * 120.00234 * 180.24572 * 18 17 16 35 35 H 1.08005 * 119.99743 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1049 -0.0006 13 6 2.7331 -6.0287 -0.0033 14 6 1.9681 -7.3538 -0.0019 15 6 2.9473 -8.4992 -0.0031 16 6 3.3952 -9.0246 -1.2010 17 6 4.2937 -10.0749 -1.2021 18 6 4.7485 -10.5968 -0.0053 19 6 4.2971 -10.0747 1.1922 20 7 4.7803 -10.6367 2.4735 21 8 4.3864 -10.1734 3.5288 22 8 5.5680 -11.5658 2.4726 23 6 3.3982 -9.0243 1.1933 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4355 -0.0028 28 1 3.3611 -5.9713 0.8858 29 1 3.3584 -5.9708 -0.8942 30 1 1.3398 -7.4116 -0.8907 31 1 1.3430 -7.4115 0.8892 32 1 3.0429 -8.6145 -2.1359 33 1 4.6432 -10.4855 -2.1378 34 1 5.4536 -11.4148 -0.0061 35 1 3.0484 -8.6139 2.1291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:30 Heat of formation + Delta-G solvation = -34.564963 kcal Electronic energy + Delta-G solvation = -19956.763837 eV Core-core repulsion = 16536.387640 eV Total energy + Delta-G solvation = -3420.376196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39445 -40.05373 -38.85848 -36.77911 -34.65213 -34.10951 -32.40178 -32.23024 -30.36611 -27.44089 -26.83827 -24.97496 -23.01047 -22.52154 -21.54609 -19.72254 -19.10207 -18.80802 -17.73948 -17.21966 -16.95850 -16.12329 -15.79759 -15.25973 -15.04115 -14.79176 -14.39465 -13.76541 -13.64963 -13.22693 -12.81019 -12.57960 -12.21502 -12.04222 -11.84584 -11.80219 -11.66121 -11.38742 -11.34946 -11.09745 -10.99559 -10.93987 -10.37204 -9.96171 -9.60515 -9.44277 -9.11474 -8.80192 -7.97357 -6.22317 -4.29535 -0.43875 0.54461 1.07881 1.15544 2.89238 3.19620 3.24955 3.26990 3.29800 3.83461 4.04755 4.15456 4.31372 4.41705 4.51353 4.54705 4.78419 4.94312 5.05820 5.14144 5.17133 5.34761 5.41764 5.53062 5.61484 5.68049 5.85246 5.99033 6.04397 6.21070 7.22934 7.34172 7.40731 7.44376 7.59606 7.90781 8.53406 8.70638 9.00025 9.37394 10.87900 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.002731 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.927938 B =10250.556492 C =10560.231148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.712 5.712 11 C 0.496 3.504 12 O -0.557 6.557 13 C -0.138 4.138 14 C -0.067 4.067 15 C -0.071 4.071 16 C -0.064 4.064 17 C -0.115 4.115 18 C -0.064 4.064 19 C -0.043 4.043 20 N 0.028 4.972 21 O -0.158 6.158 22 O -0.165 6.165 23 C -0.053 4.053 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.391 0.609 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.974 -19.760 -3.029 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.437 6.437 13 C -0.178 4.178 14 C -0.105 4.105 15 C -0.072 4.072 16 C -0.082 4.082 17 C -0.133 4.133 18 C -0.083 4.083 19 C -0.125 4.125 20 N 0.548 4.452 21 O -0.375 6.375 22 O -0.380 6.380 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.224 0.776 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.720 -19.482 -3.641 21.653 hybrid contribution 1.075 0.892 0.357 1.442 sum 9.796 -18.590 -3.284 21.268 Atomic orbital electron populations 1.69981 1.06125 1.27271 1.48870 1.24962 0.94924 0.99515 0.94636 0.86355 0.79822 0.82906 0.77805 1.19623 1.20772 1.20739 1.21261 0.93294 0.90446 1.53267 0.91850 1.19124 0.88323 0.82017 0.97773 1.46491 1.11198 1.06235 1.72035 1.20384 0.89398 0.84463 0.77645 1.90672 1.16910 1.84949 1.51175 1.21676 0.98741 0.93099 1.04291 1.20422 0.95160 0.89155 1.05756 1.20090 0.97970 0.97646 0.91515 1.21661 0.93846 0.93901 0.98831 1.21227 0.97676 0.96833 0.97611 1.21057 0.98105 0.99191 0.89988 1.21134 1.05549 1.02198 0.83659 1.43668 0.99000 0.99620 1.02958 1.94566 1.60245 1.62991 1.19649 1.94526 1.29411 1.19794 1.94258 1.21050 0.93042 0.92346 1.00788 0.92445 0.95511 0.95482 0.77642 0.89196 0.89160 0.89078 0.89251 0.83708 0.83505 0.83128 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.39 5.43 -5.20 -0.03 6.36 16 10 N -0.71 -14.11 5.55 -61.48 -0.34 -14.45 16 11 C 0.50 8.95 7.83 -10.99 -0.09 8.86 16 12 O -0.56 -12.36 15.98 5.56 0.09 -12.27 16 13 C -0.14 -1.60 5.68 -27.88 -0.16 -1.75 16 14 C -0.07 -0.70 4.63 -27.88 -0.13 -0.83 16 15 C -0.07 -0.61 5.13 -104.63 -0.54 -1.14 16 16 C -0.06 -0.42 9.70 -39.58 -0.38 -0.81 16 17 C -0.11 -0.66 10.05 -39.58 -0.40 -1.06 16 18 C -0.06 -0.48 9.56 -39.58 -0.38 -0.86 16 19 C -0.04 -0.43 6.85 -79.95 -0.55 -0.97 16 20 N 0.03 0.35 4.45 33.96 0.15 0.50 16 21 O -0.16 -2.14 18.45 -29.46 -0.54 -2.68 16 22 O -0.16 -2.10 18.45 -29.46 -0.54 -2.64 16 23 C -0.05 -0.50 9.21 -39.58 -0.36 -0.87 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.58 8.32 -40.82 -0.34 6.24 16 28 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.96 8.04 -51.93 -0.42 0.55 16 31 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.15 0.93 7.61 -52.49 -0.40 0.53 16 35 H 0.15 1.43 7.61 -52.48 -0.40 1.03 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -32.88 320.06 -8.12 -41.00 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.04 Total: 1.40 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.43 Total: -6.20 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.55 Total: -38.91 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.00 Total: -17.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.88 -8.12 -41.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.438 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds