Wall clock time and date at job start Mon Mar 30 2020 23:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00159 * 2 1 4 4 H 1.48497 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47026 * 300.00504 * 3 2 1 6 6 H 1.48499 * 109.46680 * 60.00027 * 3 2 1 7 7 C 1.37880 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99991 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.53007 * 109.47280 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47280 * 180.02562 * 14 13 11 16 16 C 1.38257 * 120.00171 * 270.02305 * 15 14 13 17 17 C 1.38217 * 120.00124 * 179.97438 * 16 15 14 18 18 C 1.38258 * 119.99907 * 359.76573 * 17 16 15 19 19 C 1.38216 * 119.99766 * 0.46893 * 18 17 16 20 20 N 1.48026 * 119.99744 * 179.78745 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.72731 * 20 19 18 22 22 O 1.21802 * 120.00016 * 359.44228 * 20 19 18 23 23 C 1.38215 * 120.00134 * 89.99890 * 15 14 13 24 24 H 0.97000 * 119.99828 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46773 * 60.00124 * 9 7 2 26 26 H 1.09000 * 109.46881 * 300.00244 * 9 7 2 27 27 H 0.96997 * 120.00735 * 359.97438 * 10 9 7 28 28 H 1.09008 * 109.47072 * 60.00287 * 13 11 10 29 29 H 1.09000 * 109.47483 * 300.00110 * 13 11 10 30 30 H 1.09000 * 109.47061 * 60.00136 * 14 13 11 31 31 H 1.09000 * 109.46981 * 300.00452 * 14 13 11 32 32 H 1.08001 * 120.00180 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.99804 * 179.97438 * 17 16 15 34 34 H 1.07996 * 120.00234 * 180.24572 * 18 17 16 35 35 H 1.08005 * 119.99743 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1049 -0.0006 13 6 2.7331 -6.0287 -0.0033 14 6 1.9681 -7.3538 -0.0019 15 6 2.9473 -8.4992 -0.0031 16 6 3.3952 -9.0246 -1.2010 17 6 4.2937 -10.0749 -1.2021 18 6 4.7485 -10.5968 -0.0053 19 6 4.2971 -10.0747 1.1922 20 7 4.7803 -10.6367 2.4735 21 8 4.3864 -10.1734 3.5288 22 8 5.5680 -11.5658 2.4726 23 6 3.3982 -9.0243 1.1933 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4355 -0.0028 28 1 3.3611 -5.9713 0.8858 29 1 3.3584 -5.9708 -0.8942 30 1 1.3398 -7.4116 -0.8907 31 1 1.3430 -7.4115 0.8892 32 1 3.0429 -8.6145 -2.1359 33 1 4.6432 -10.4855 -2.1378 34 1 5.4536 -11.4148 -0.0061 35 1 3.0484 -8.6139 2.1291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427633302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:30 Heat of formation + Delta-G solvation = -55.632316 kcal Electronic energy + Delta-G solvation = -19957.677386 eV Core-core repulsion = 16536.387640 eV Total energy + Delta-G solvation = -3421.289745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.26490 -40.89556 -40.21483 -37.70603 -36.22585 -35.26264 -34.34622 -32.86354 -31.33123 -29.24716 -27.64418 -26.15716 -24.30646 -23.59494 -22.45503 -21.27724 -19.90534 -19.68415 -18.94175 -18.62087 -17.56497 -17.44835 -17.03663 -16.95080 -16.19419 -16.06802 -15.41792 -14.82074 -14.60425 -14.42742 -14.16568 -13.88640 -13.59550 -13.18561 -13.12578 -12.84141 -12.76646 -12.75772 -12.41626 -12.33710 -12.28496 -12.23009 -11.97277 -11.46509 -10.82670 -10.82535 -10.53771 -10.13459 -9.82426 -8.30604 -6.46934 -1.24445 -0.04222 0.31085 0.37763 1.42845 1.43513 1.56951 1.78171 2.25631 2.34413 2.62510 3.04666 3.32764 3.50582 3.75195 3.88875 3.95155 3.97826 4.08688 4.26040 4.33920 4.62139 4.70808 4.71532 4.88918 5.03575 5.11249 5.13404 5.15561 5.23846 5.31545 5.48758 5.54632 5.69011 5.84730 6.44237 6.65043 6.91091 7.22891 7.50425 8.81732 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.002731 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.927938 B =10250.556492 C =10560.231148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.710 5.710 11 C 0.492 3.508 12 O -0.604 6.604 13 C -0.121 4.121 14 C -0.062 4.062 15 C -0.074 4.074 16 C -0.051 4.051 17 C -0.100 4.100 18 C -0.060 4.060 19 C -0.063 4.063 20 N 0.030 4.970 21 O -0.203 6.203 22 O -0.166 6.166 23 C -0.063 4.063 24 H 0.269 0.731 25 H -0.011 1.011 26 H -0.014 1.014 27 H 0.409 0.591 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.657 -20.283 -5.089 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.141 3.859 10 N -0.359 5.359 11 C 0.280 3.720 12 O -0.486 6.486 13 C -0.161 4.161 14 C -0.100 4.100 15 C -0.075 4.075 16 C -0.069 4.069 17 C -0.118 4.118 18 C -0.079 4.079 19 C -0.146 4.146 20 N 0.544 4.456 21 O -0.411 6.411 22 O -0.384 6.384 23 C -0.082 4.082 24 H 0.077 0.923 25 H 0.007 0.993 26 H 0.004 0.996 27 H 0.244 0.756 28 H 0.128 0.872 29 H 0.144 0.856 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.204 0.796 34 H 0.183 0.817 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.426 -20.009 -5.644 23.723 hybrid contribution 0.208 0.949 0.886 1.315 sum 11.634 -19.060 -4.758 22.831 Atomic orbital electron populations 1.70138 1.08259 1.28494 1.50099 1.26061 0.95766 1.03911 0.93916 0.85127 0.79125 0.77418 0.77656 1.17614 1.20413 1.20613 1.21666 0.94311 0.90661 1.52672 0.89829 1.18534 0.88776 0.84493 0.94077 1.46248 1.11188 1.05778 1.72733 1.21556 0.89934 0.85082 0.75388 1.90652 1.19610 1.85595 1.52747 1.21659 0.97286 0.90265 1.06850 1.20292 0.95365 0.89387 1.04928 1.19837 0.98141 0.97513 0.92033 1.22024 0.92698 0.93273 0.98862 1.21655 0.96251 0.95683 0.98214 1.21424 0.97753 0.99143 0.89533 1.21305 1.07001 1.03307 0.82971 1.44046 0.98559 0.99296 1.03701 1.94561 1.61553 1.63950 1.21002 1.94486 1.29411 1.19970 1.94519 1.21030 0.93428 0.92690 1.01034 0.92261 0.99298 0.99647 0.75553 0.87233 0.85636 0.89132 0.91146 0.81002 0.79596 0.81668 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.56 -29.58 9.28 25.60 0.24 -29.35 16 8 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 9 C 0.26 14.13 5.43 85.64 0.46 14.59 16 10 N -0.71 -28.15 5.55 -466.81 -2.59 -30.74 16 11 C 0.49 17.69 7.83 87.66 0.69 18.38 16 12 O -0.60 -27.68 15.98 -3.04 -0.05 -27.73 16 13 C -0.12 -2.53 5.68 29.85 0.17 -2.36 16 14 C -0.06 -1.19 4.63 29.85 0.14 -1.06 16 15 C -0.07 -1.08 5.13 -19.87 -0.10 -1.18 16 16 C -0.05 -0.44 9.70 22.27 0.22 -0.22 16 17 C -0.10 -0.65 10.05 22.27 0.22 -0.43 16 18 C -0.06 -0.70 9.56 22.27 0.21 -0.49 16 19 C -0.06 -1.17 6.85 36.37 0.25 -0.92 16 20 N 0.03 0.75 4.45 -46.46 -0.21 0.54 16 21 O -0.20 -5.78 18.45 18.89 0.35 -5.43 16 22 O -0.17 -4.15 18.45 18.88 0.35 -3.80 16 23 C -0.06 -1.12 9.21 22.27 0.21 -0.92 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.41 13.14 8.32 -92.71 -0.77 12.36 16 28 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 31 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 32 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.19 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.17 1.46 7.61 -2.91 -0.02 1.44 16 35 H 0.14 2.78 7.61 -2.91 -0.02 2.76 16 Total: -1.00 -76.14 320.06 3.68 -72.46 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.35 Total: 9.60 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 3.16 Total: -3.32 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.51 Total: -85.47 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: 0.65 Total: -36.96 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -76.14 3.68 -72.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.832 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds