Wall clock time and date at job start Tue Mar 31 2020 00:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99467 * 2 1 4 4 H 1.48499 * 109.47071 * 269.99862 * 3 2 1 5 5 H 1.48491 * 109.47448 * 30.00468 * 3 2 1 6 6 H 1.48502 * 109.46634 * 150.00361 * 3 2 1 7 7 C 1.37874 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99852 * 175.32284 * 7 2 1 9 9 C 1.50696 * 120.00162 * 355.31697 * 7 2 1 10 10 C 1.53004 * 115.54835 * 85.60016 * 9 7 2 11 11 N 1.46503 * 109.46821 * 65.41512 * 10 9 7 12 12 C 1.34778 * 119.99726 * 183.65563 * 11 10 9 13 13 O 1.21607 * 120.00382 * 354.80615 * 12 11 10 14 14 C 1.47292 * 119.99864 * 174.53368 * 12 11 10 15 15 C 1.36570 * 125.80735 * 186.02422 * 14 12 11 16 16 C 1.40063 * 106.92820 * 179.97438 * 15 14 12 17 17 C 1.36573 * 106.92776 * 359.97438 * 16 15 14 18 18 C 1.47290 * 125.81055 * 180.02562 * 17 16 15 19 19 N 1.34766 * 120.00220 * 180.02562 * 18 17 16 20 20 O 1.21617 * 119.99155 * 0.02562 * 18 17 16 21 21 O 1.34559 * 108.38635 * 359.73886 * 17 16 15 22 22 C 1.53002 * 117.50313 * 231.27313 * 9 7 2 23 23 C 1.53000 * 117.50046 * 299.93382 * 9 7 2 24 24 H 0.96997 * 120.00103 * 5.05602 * 1 2 3 25 25 H 1.08998 * 109.47064 * 305.41588 * 10 9 7 26 26 H 1.08998 * 109.47063 * 185.41157 * 10 9 7 27 27 H 0.97004 * 120.00401 * 3.65436 * 11 10 9 28 28 H 1.07993 * 126.53329 * 0.02981 * 15 14 12 29 29 H 1.07996 * 126.53561 * 179.97438 * 16 15 14 30 30 H 0.97002 * 120.00608 * 359.97438 * 19 18 17 31 31 H 0.97008 * 120.00303 * 179.97438 * 19 18 17 32 32 H 1.08999 * 117.50134 * 215.00591 * 22 9 7 33 33 H 1.09001 * 117.49262 * 0.02562 * 22 9 7 34 34 H 1.08994 * 117.49925 * 359.97438 * 23 9 7 35 35 H 1.09007 * 117.49647 * 144.97200 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0768 9 6 1.2549 -2.4970 0.1054 10 6 0.7378 -3.0701 -1.2156 11 7 1.8727 -3.4362 -2.0666 12 6 1.6580 -3.8961 -3.3152 13 8 0.5229 -4.0968 -3.7024 14 6 2.7980 -4.1500 -4.2126 15 6 2.7152 -4.5029 -5.5294 16 6 4.0278 -4.6427 -5.9975 17 6 4.8560 -4.3686 -4.9467 18 6 6.3283 -4.3927 -4.9807 19 7 7.0330 -4.1017 -3.8694 20 8 6.9080 -4.6753 -6.0118 21 8 4.0983 -4.0666 -3.8765 22 6 1.7124 -3.4903 1.1755 23 6 0.4011 -2.7212 1.3551 24 1 -0.4850 0.8367 -0.0740 25 1 0.1297 -2.3213 -1.7232 26 1 0.1332 -3.9547 -1.0160 27 1 2.7787 -3.3475 -1.7315 28 1 1.8101 -4.6459 -6.1009 29 1 4.3278 -4.9152 -6.9985 30 1 6.5706 -3.8759 -3.0471 31 1 8.0027 -4.1179 -3.8918 32 1 1.6450 -4.5521 0.9383 33 1 2.5553 -3.2011 1.8031 34 1 0.3820 -1.9265 2.1008 35 1 -0.5292 -3.2767 1.2360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435228999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:16 Heat of formation + Delta-G solvation = -39.063844 kcal Electronic energy + Delta-G solvation = -20978.006563 eV Core-core repulsion = 17557.435280 eV Total energy + Delta-G solvation = -3420.571283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.87191 -39.50029 -38.99869 -36.81451 -34.16468 -33.72937 -32.98960 -32.05104 -30.34834 -26.82242 -25.49614 -24.13137 -22.07147 -21.33054 -20.98949 -20.06580 -19.56381 -18.67756 -17.63139 -17.09588 -16.67844 -16.21155 -15.29978 -14.94522 -14.79485 -14.69535 -14.32768 -14.07267 -13.57292 -13.30452 -13.17627 -12.98668 -12.77057 -11.96963 -11.68063 -11.05364 -11.02651 -10.81291 -10.60704 -10.37216 -10.22942 -10.08694 -10.06280 -9.64264 -9.12149 -8.91620 -8.57978 -8.45826 -8.24465 -6.15926 -4.25472 0.58390 1.86564 2.29222 2.91690 3.17361 3.20556 3.28947 3.29739 3.34425 3.61053 4.28614 4.57869 4.72495 4.94863 5.12334 5.24636 5.38667 5.51828 5.70107 5.90336 6.09598 6.21925 6.31677 6.35012 6.39910 6.53284 6.59222 6.68613 6.96638 7.00260 7.04198 7.29654 7.38901 7.73193 7.81127 7.97048 8.23439 8.45867 8.75695 9.42309 10.91892 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.004818 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.845216 B = 5809.800314 C = 6453.845776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.684 5.684 12 C 0.586 3.414 13 O -0.526 6.526 14 C -0.016 4.016 15 C -0.149 4.149 16 C -0.124 4.124 17 C -0.067 4.067 18 C 0.613 3.387 19 N -0.841 5.841 20 O -0.524 6.524 21 O -0.150 6.150 22 C -0.211 4.211 23 C -0.144 4.144 24 H 0.263 0.737 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.405 0.595 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.411 0.589 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -7.706 -5.458 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.023 3.977 10 C 0.037 3.963 11 N -0.331 5.331 12 C 0.369 3.631 13 O -0.405 6.405 14 C -0.071 4.071 15 C -0.170 4.170 16 C -0.145 4.145 17 C -0.121 4.121 18 C 0.397 3.603 19 N -0.404 5.404 20 O -0.401 6.401 21 O -0.046 6.046 22 C -0.248 4.248 23 C -0.182 4.182 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.240 0.760 28 H 0.186 0.814 29 H 0.184 0.816 30 H 0.241 0.759 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.413 -7.792 -6.046 12.963 hybrid contribution 0.914 1.160 0.425 1.537 sum 9.327 -6.632 -5.621 12.750 Atomic orbital electron populations 1.69966 1.05876 1.27079 1.48077 1.24983 0.94825 0.98984 0.94193 0.86632 0.79935 0.83509 0.78213 1.20628 1.21091 1.19794 1.20326 0.92574 0.88459 1.52541 0.92163 1.19032 0.99127 0.94010 0.85528 1.21187 0.86202 0.97480 0.91402 1.45961 1.12357 1.62100 1.12700 1.16728 0.85563 0.79134 0.81642 1.90848 1.20561 1.53807 1.75245 1.22907 0.81492 1.06288 0.96379 1.21953 0.98807 1.02718 0.93502 1.21948 0.91432 1.01070 1.00044 1.22189 0.91898 1.10828 0.87136 1.16613 0.83274 0.76486 0.83917 1.43704 1.11315 1.72079 1.13285 1.90906 1.68908 1.49228 1.31089 1.84065 1.16577 1.67475 1.36463 1.23047 0.99168 0.95626 1.06961 1.22489 0.91976 1.01084 1.02630 0.92741 0.90257 0.93851 0.75992 0.81391 0.81573 0.75940 0.75842 0.91558 0.90232 0.89646 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 12.85 55.43 0.71 -22.73 16 2 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 3 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.50 -12.33 8.71 -34.44 -0.30 -12.63 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.02 0.53 1.38 -155.66 -0.21 0.31 16 10 C 0.16 3.40 5.51 -4.04 -0.02 3.37 16 11 N -0.68 -12.60 5.46 -61.43 -0.34 -12.94 16 12 C 0.59 10.64 7.80 -12.58 -0.10 10.54 16 13 O -0.53 -10.98 16.88 5.27 0.09 -10.89 16 14 C -0.02 -0.24 7.13 -36.50 -0.26 -0.50 16 15 C -0.15 -1.99 10.60 -39.50 -0.42 -2.41 16 16 C -0.12 -1.52 10.60 -39.50 -0.42 -1.93 16 17 C -0.07 -0.85 7.14 -36.50 -0.26 -1.11 16 18 C 0.61 7.27 8.08 -12.58 -0.10 7.16 16 19 N -0.84 -6.80 8.87 30.40 0.27 -6.53 16 20 O -0.52 -7.64 17.70 5.26 0.09 -7.55 16 21 O -0.15 -2.03 10.16 4.31 0.04 -1.99 16 22 C -0.21 -4.10 9.96 -26.69 -0.27 -4.37 16 23 C -0.14 -3.11 9.35 -26.69 -0.25 -3.36 16 24 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 25 H 0.08 1.94 8.14 -51.93 -0.42 1.51 16 26 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 27 H 0.41 6.83 8.22 -40.82 -0.34 6.50 16 28 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.41 2.79 8.59 -40.82 -0.35 2.44 16 31 H 0.41 2.47 8.93 -40.82 -0.36 2.10 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -29.83 321.21 -5.99 -35.82 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.98 Total: 10.11 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.71 Total: -3.10 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.65 Total: -42.20 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.23 Total: -20.42 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.83 -5.99 -35.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435228999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.242 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds