Wall clock time and date at job start Tue Mar 31 2020 00:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99467 * 2 1 4 4 H 1.48499 * 109.47071 * 269.99862 * 3 2 1 5 5 H 1.48491 * 109.47448 * 30.00468 * 3 2 1 6 6 H 1.48502 * 109.46634 * 150.00361 * 3 2 1 7 7 C 1.37874 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99852 * 175.32284 * 7 2 1 9 9 C 1.50696 * 120.00162 * 355.31697 * 7 2 1 10 10 C 1.53004 * 115.54835 * 85.60016 * 9 7 2 11 11 N 1.46503 * 109.46821 * 65.41512 * 10 9 7 12 12 C 1.34778 * 119.99726 * 183.65563 * 11 10 9 13 13 O 1.21607 * 120.00382 * 354.80615 * 12 11 10 14 14 C 1.47292 * 119.99864 * 174.53368 * 12 11 10 15 15 C 1.36570 * 125.80735 * 186.02422 * 14 12 11 16 16 C 1.40063 * 106.92820 * 179.97438 * 15 14 12 17 17 C 1.36573 * 106.92776 * 359.97438 * 16 15 14 18 18 C 1.47290 * 125.81055 * 180.02562 * 17 16 15 19 19 N 1.34766 * 120.00220 * 180.02562 * 18 17 16 20 20 O 1.21617 * 119.99155 * 0.02562 * 18 17 16 21 21 O 1.34559 * 108.38635 * 359.73886 * 17 16 15 22 22 C 1.53002 * 117.50313 * 231.27313 * 9 7 2 23 23 C 1.53000 * 117.50046 * 299.93382 * 9 7 2 24 24 H 0.96997 * 120.00103 * 5.05602 * 1 2 3 25 25 H 1.08998 * 109.47064 * 305.41588 * 10 9 7 26 26 H 1.08998 * 109.47063 * 185.41157 * 10 9 7 27 27 H 0.97004 * 120.00401 * 3.65436 * 11 10 9 28 28 H 1.07993 * 126.53329 * 0.02981 * 15 14 12 29 29 H 1.07996 * 126.53561 * 179.97438 * 16 15 14 30 30 H 0.97002 * 120.00608 * 359.97438 * 19 18 17 31 31 H 0.97008 * 120.00303 * 179.97438 * 19 18 17 32 32 H 1.08999 * 117.50134 * 215.00591 * 22 9 7 33 33 H 1.09001 * 117.49262 * 0.02562 * 22 9 7 34 34 H 1.08994 * 117.49925 * 359.97438 * 23 9 7 35 35 H 1.09007 * 117.49647 * 144.97200 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0768 9 6 1.2549 -2.4970 0.1054 10 6 0.7378 -3.0701 -1.2156 11 7 1.8727 -3.4362 -2.0666 12 6 1.6580 -3.8961 -3.3152 13 8 0.5229 -4.0968 -3.7024 14 6 2.7980 -4.1500 -4.2126 15 6 2.7152 -4.5029 -5.5294 16 6 4.0278 -4.6427 -5.9975 17 6 4.8560 -4.3686 -4.9467 18 6 6.3283 -4.3927 -4.9807 19 7 7.0330 -4.1017 -3.8694 20 8 6.9080 -4.6753 -6.0118 21 8 4.0983 -4.0666 -3.8765 22 6 1.7124 -3.4903 1.1755 23 6 0.4011 -2.7212 1.3551 24 1 -0.4850 0.8367 -0.0740 25 1 0.1297 -2.3213 -1.7232 26 1 0.1332 -3.9547 -1.0160 27 1 2.7787 -3.3475 -1.7315 28 1 1.8101 -4.6459 -6.1009 29 1 4.3278 -4.9152 -6.9985 30 1 6.5706 -3.8759 -3.0471 31 1 8.0027 -4.1179 -3.8918 32 1 1.6450 -4.5521 0.9383 33 1 2.5553 -3.2011 1.8031 34 1 0.3820 -1.9265 2.1008 35 1 -0.5292 -3.2767 1.2360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435228999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:16 Heat of formation + Delta-G solvation = -61.281326 kcal Electronic energy + Delta-G solvation = -20978.969985 eV Core-core repulsion = 17557.435280 eV Total energy + Delta-G solvation = -3421.534705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.93521 -40.69555 -40.25365 -38.49747 -35.26934 -34.98079 -34.10233 -33.94996 -31.47831 -28.38891 -27.31781 -25.33764 -23.19500 -22.90601 -22.14651 -21.36228 -21.16547 -19.79505 -18.85381 -18.07886 -17.84874 -17.76541 -16.83374 -16.66707 -16.17495 -15.89107 -15.59381 -15.41455 -15.07134 -14.52157 -14.29922 -14.20227 -14.12426 -13.72791 -13.46308 -12.90782 -12.85376 -12.36709 -12.03393 -11.86042 -11.58568 -11.34699 -11.25032 -10.90244 -10.89323 -10.45155 -10.22777 -10.02383 -9.79581 -8.09918 -6.22840 -0.51108 0.79046 1.18632 1.41803 1.45338 1.52408 1.95207 1.96640 2.13712 2.41907 2.45470 3.18811 3.44783 3.61107 3.72442 3.89882 4.23538 4.36473 4.41647 4.54472 4.65116 4.70004 4.74382 4.95542 5.02937 5.10467 5.29391 5.34652 5.47139 5.58933 5.67079 5.72123 5.78028 6.18534 6.36280 6.52319 6.84352 7.02521 7.03394 7.47077 8.97554 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.004818 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.845216 B = 5809.800314 C = 6453.845776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.000 4.000 10 C 0.175 3.825 11 N -0.681 5.681 12 C 0.590 3.410 13 O -0.560 6.560 14 C -0.043 4.043 15 C -0.133 4.133 16 C -0.125 4.125 17 C -0.061 4.061 18 C 0.613 3.387 19 N -0.818 5.818 20 O -0.552 6.552 21 O -0.147 6.147 22 C -0.176 4.176 23 C -0.155 4.155 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.414 0.586 28 H 0.180 0.820 29 H 0.188 0.812 30 H 0.420 0.580 31 H 0.423 0.577 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -8.440 -5.729 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.541 4.541 8 H 0.082 0.918 9 C 0.000 4.000 10 C 0.052 3.948 11 N -0.329 5.329 12 C 0.375 3.625 13 O -0.441 6.441 14 C -0.098 4.098 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.115 4.115 18 C 0.397 3.603 19 N -0.382 5.382 20 O -0.432 6.432 21 O -0.043 6.043 22 C -0.213 4.213 23 C -0.194 4.194 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.250 0.750 28 H 0.197 0.803 29 H 0.206 0.794 30 H 0.251 0.749 31 H 0.257 0.743 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.546 -8.523 -6.274 14.941 hybrid contribution 0.348 1.345 0.493 1.474 sum 10.894 -7.179 -5.781 14.270 Atomic orbital electron populations 1.70085 1.07146 1.27331 1.49866 1.25655 0.95425 1.01881 0.94456 0.85757 0.79097 0.80137 0.77877 1.20814 1.21644 1.18699 1.20656 0.92902 0.89465 1.51032 0.91794 1.19066 1.00193 0.94524 0.86254 1.20770 0.86688 0.96414 0.90974 1.45800 1.11963 1.62301 1.12844 1.16957 0.86049 0.78018 0.81459 1.90821 1.22266 1.55159 1.75851 1.22313 0.81483 1.09515 0.96460 1.22202 0.99886 1.00559 0.92707 1.22219 0.90624 1.00697 1.00969 1.22541 0.92479 1.09540 0.86981 1.16547 0.82859 0.76596 0.84310 1.43580 1.12038 1.70054 1.12548 1.90904 1.69117 1.50924 1.32301 1.84032 1.15872 1.67673 1.36729 1.23037 0.97699 0.96288 1.04275 1.22426 0.93551 1.01415 1.01979 0.93210 0.94229 0.93376 0.75005 0.80254 0.79443 0.74872 0.74345 0.89025 0.89523 0.91842 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.67 12.85 21.45 0.28 -49.40 16 2 C 0.03 1.37 5.40 84.65 0.46 1.82 16 3 Si 0.94 40.99 29.54 68.60 2.03 43.02 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.50 -24.49 8.71 25.60 0.22 -24.27 16 8 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 9 C 0.00 0.02 1.38 -52.93 -0.07 -0.06 16 10 C 0.18 7.50 5.51 86.38 0.48 7.97 16 11 N -0.68 -24.81 5.46 -466.50 -2.55 -27.36 16 12 C 0.59 21.25 7.80 86.62 0.68 21.93 16 13 O -0.56 -23.60 16.88 -4.05 -0.07 -23.67 16 14 C -0.04 -1.27 7.13 24.26 0.17 -1.09 16 15 C -0.13 -3.31 10.60 22.32 0.24 -3.08 16 16 C -0.12 -2.74 10.60 22.32 0.24 -2.51 16 17 C -0.06 -1.42 7.14 24.26 0.17 -1.24 16 18 C 0.61 13.07 8.08 86.63 0.70 13.77 16 19 N -0.82 -10.98 8.87 -175.99 -1.56 -12.54 16 20 O -0.55 -14.97 17.70 -4.08 -0.07 -15.04 16 21 O -0.15 -3.70 10.16 -7.50 -0.08 -3.78 16 22 C -0.18 -6.48 9.96 30.62 0.30 -6.18 16 23 C -0.16 -6.69 9.35 30.62 0.29 -6.40 16 24 H 0.26 13.77 8.32 -92.71 -0.77 12.99 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.98 8.09 -2.39 -0.02 1.97 16 27 H 0.41 13.47 8.22 -92.71 -0.76 12.71 16 28 H 0.18 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 30 H 0.42 4.46 8.59 -92.71 -0.80 3.67 16 31 H 0.42 3.88 8.93 -92.70 -0.83 3.06 16 32 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 33 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -63.93 321.21 0.62 -63.31 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -1.22 Total: 24.79 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 3.87 Total: 0.67 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -3.83 Total: -89.29 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.22 Total: -42.49 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -63.93 0.62 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435228999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.026 kcal (2) G-P(sol) polarization free energy of solvation -63.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds