Wall clock time and date at job start Tue Mar 31 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38093 * 119.96026 * 2 1 4 4 C 1.38508 * 120.39193 * 180.02562 * 3 2 1 5 5 C 1.37828 * 120.29819 * 0.23298 * 4 3 2 6 6 C 1.39671 * 119.90675 * 359.46893 * 5 4 3 7 7 C 1.47541 * 120.18987 * 180.27833 * 6 5 4 8 8 O 1.21589 * 119.99590 * 180.27680 * 7 6 5 9 9 N 1.34777 * 120.00132 * 0.27064 * 7 6 5 10 10 C 1.46502 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46657 * 180.02562 * 10 9 7 12 12 O 1.21291 * 120.00221 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99753 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99840 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99856 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00102 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47141 * 89.99955 * 18 16 14 20 20 H 1.48501 * 109.47046 * 209.99487 * 18 16 14 21 21 H 1.48502 * 109.47091 * 329.99627 * 18 16 14 22 22 C 1.38671 * 119.95530 * 179.97438 * 2 1 3 23 23 O 1.35654 * 120.15245 * 359.97438 * 22 2 1 24 24 H 1.09008 * 109.47189 * 90.00160 * 1 2 3 25 25 H 1.09003 * 109.47859 * 210.00001 * 1 2 3 26 26 H 1.08999 * 109.47710 * 330.00802 * 1 2 3 27 27 H 1.08000 * 119.80545 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.84813 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.04789 * 179.74233 * 5 4 3 30 30 H 0.96997 * 119.99976 * 0.02562 * 9 7 6 31 31 H 1.08995 * 109.46940 * 299.99649 * 10 9 7 32 32 H 1.08994 * 109.47245 * 60.00036 * 10 9 7 33 33 H 0.97000 * 119.99810 * 359.97438 * 13 11 10 34 34 H 0.97005 * 119.99894 * 180.02562 * 17 16 14 35 35 H 0.96710 * 113.99879 * 89.99914 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2859 0.0221 -0.0059 6 6 3.6011 -1.1952 0.0004 7 6 4.3488 -2.4671 0.0009 8 8 3.7490 -3.5248 0.0013 9 7 5.6965 -2.4566 0.0008 10 6 6.4388 -3.7196 0.0007 11 6 7.9183 -3.4326 0.0012 12 8 8.3136 -2.2860 0.0011 13 7 8.8021 -4.4502 0.0017 14 6 10.1479 -4.1891 0.0017 15 1 10.4999 -3.1681 0.0008 16 6 11.0591 -5.2382 0.0017 17 7 10.6307 -6.4805 0.0023 18 14 12.8929 -4.8825 0.0023 19 1 13.3784 -4.7886 1.4026 20 1 13.6099 -5.9785 -0.6976 21 1 13.1482 -3.5978 -0.6974 22 6 2.1994 -1.2015 0.0005 23 8 1.5233 -2.3775 0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3635 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6528 2.1295 -0.0004 28 1 4.1121 2.1476 -0.0009 29 1 5.3658 0.0350 -0.0105 30 1 6.1749 -1.6128 0.0007 31 1 6.1800 -4.2931 0.8907 32 1 6.1799 -4.2932 -0.8892 33 1 8.4858 -5.3672 0.0022 34 1 11.2668 -7.2129 0.0027 35 1 1.3269 -2.7191 -0.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436712088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:29 Heat of formation + Delta-G solvation = -95.309969 kcal Electronic energy + Delta-G solvation = -20533.092797 eV Core-core repulsion = 17110.082499 eV Total energy + Delta-G solvation = -3423.010298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52366 -38.93121 -37.91809 -36.76676 -34.45000 -33.72937 -32.90771 -31.39639 -30.40380 -27.80805 -26.89783 -24.77393 -23.38406 -21.92537 -20.09114 -19.64635 -18.48797 -18.09163 -17.40246 -16.34343 -15.92808 -15.51238 -15.18250 -14.97969 -14.81581 -14.42076 -14.22435 -13.78075 -13.69888 -13.51966 -13.10029 -12.63257 -12.34512 -12.19585 -12.15717 -11.82839 -11.66767 -11.63332 -11.13437 -10.76672 -10.46902 -10.32973 -9.65057 -9.65035 -9.09691 -8.78854 -8.70300 -8.65311 -8.11619 -6.52703 -3.94814 0.68912 1.05289 2.89270 3.10873 3.20880 3.24866 3.33892 3.64558 3.73735 4.09772 4.11288 4.54498 4.63295 4.78177 4.85414 5.02039 5.13282 5.15888 5.34236 5.38383 5.49589 5.59626 5.86500 5.91072 5.95333 6.02560 6.06359 6.18646 6.22716 6.55304 6.65769 7.44834 7.61427 7.79640 7.90569 8.41411 8.45751 9.03130 9.37728 9.85454 10.64179 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.003158 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.313984 B = 8864.105120 C = 9497.415814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.084 4.084 4 C -0.134 4.134 5 C -0.075 4.075 6 C -0.155 4.155 7 C 0.554 3.446 8 O -0.531 6.531 9 N -0.704 5.704 10 C 0.110 3.890 11 C 0.428 3.572 12 O -0.598 6.598 13 N -0.548 5.548 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.165 3.835 23 O -0.474 6.474 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 11.716 -1.691 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.152 4.152 5 C -0.093 4.093 6 C -0.159 4.159 7 C 0.340 3.660 8 O -0.409 6.409 9 N -0.359 5.359 10 C -0.018 4.018 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.435 4.435 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C 0.118 3.882 23 O -0.285 6.285 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -16.856 11.537 -1.092 20.455 hybrid contribution 1.092 -0.167 -0.461 1.197 sum -15.764 11.369 -1.553 19.498 Atomic orbital electron populations 1.20677 0.90274 1.03366 1.02370 1.20214 0.96990 0.92263 1.03295 1.21116 0.94223 0.97220 0.97680 1.21099 0.94104 0.98251 1.01726 1.21395 1.00488 0.91284 0.96181 1.20438 0.93680 0.93932 1.07858 1.18002 0.81940 0.88648 0.77378 1.90786 1.68661 1.31801 1.49679 1.45638 1.05570 1.10560 1.74118 1.20961 0.91174 0.86282 1.03364 1.19731 0.86944 0.86327 0.85644 1.90487 1.79596 1.20962 1.57475 1.41794 1.06181 1.07788 1.62519 1.19733 0.80361 0.95097 1.48292 0.87656 1.25333 1.01028 0.94601 0.96756 1.69618 1.36090 0.98493 1.49244 0.85806 0.81452 0.78227 0.78507 1.20246 1.20783 1.19304 1.18279 0.88154 0.85605 0.96129 1.84720 1.75377 1.35131 1.33266 0.91273 0.90660 0.91416 0.85335 0.85069 0.84716 0.75181 0.89706 0.89722 0.77001 0.91561 0.74935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.79 36.00 0.35 -0.48 16 2 C -0.13 -1.30 5.89 -104.52 -0.62 -1.91 16 3 C -0.08 -0.75 9.68 -39.53 -0.38 -1.13 16 4 C -0.13 -1.28 10.02 -39.63 -0.40 -1.67 16 5 C -0.07 -0.88 9.54 -39.20 -0.37 -1.26 16 6 C -0.16 -2.19 5.89 -104.84 -0.62 -2.81 16 7 C 0.55 9.43 7.76 -12.47 -0.10 9.33 16 8 O -0.53 -10.33 15.16 -16.59 -0.25 -10.58 16 9 N -0.70 -12.22 5.48 -62.53 -0.34 -12.57 16 10 C 0.11 2.07 6.15 -5.19 -0.03 2.03 16 11 C 0.43 9.86 7.85 -10.98 -0.09 9.77 16 12 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 13 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 14 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 15 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.91 13.05 55.50 0.72 -23.18 16 18 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C 0.16 2.12 6.69 -38.70 -0.26 1.86 16 23 O -0.47 -6.14 10.62 -40.54 -0.43 -6.58 16 24 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 1.51 6.40 -52.49 -0.34 1.18 16 30 H 0.41 6.88 5.47 -40.82 -0.22 6.66 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.39 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -32.73 310.61 -6.27 -39.00 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -2.90 Total: 16.76 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.75 Total: 5.87 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.32 Total: -49.44 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.60 Total: -32.35 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.73 -6.27 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436712088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.313 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds