Wall clock time and date at job start Tue Mar 31 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38093 * 119.96026 * 2 1 4 4 C 1.38508 * 120.39193 * 180.02562 * 3 2 1 5 5 C 1.37828 * 120.29819 * 0.23298 * 4 3 2 6 6 C 1.39671 * 119.90675 * 359.46893 * 5 4 3 7 7 C 1.47541 * 120.18987 * 180.27833 * 6 5 4 8 8 O 1.21589 * 119.99590 * 180.27680 * 7 6 5 9 9 N 1.34777 * 120.00132 * 0.27064 * 7 6 5 10 10 C 1.46502 * 119.99730 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46657 * 180.02562 * 10 9 7 12 12 O 1.21291 * 120.00221 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99753 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99840 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99856 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00102 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99715 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47141 * 89.99955 * 18 16 14 20 20 H 1.48501 * 109.47046 * 209.99487 * 18 16 14 21 21 H 1.48502 * 109.47091 * 329.99627 * 18 16 14 22 22 C 1.38671 * 119.95530 * 179.97438 * 2 1 3 23 23 O 1.35654 * 120.15245 * 359.97438 * 22 2 1 24 24 H 1.09008 * 109.47189 * 90.00160 * 1 2 3 25 25 H 1.09003 * 109.47859 * 210.00001 * 1 2 3 26 26 H 1.08999 * 109.47710 * 330.00802 * 1 2 3 27 27 H 1.08000 * 119.80545 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.84813 * 179.97438 * 4 3 2 29 29 H 1.08000 * 120.04789 * 179.74233 * 5 4 3 30 30 H 0.96997 * 119.99976 * 0.02562 * 9 7 6 31 31 H 1.08995 * 109.46940 * 299.99649 * 10 9 7 32 32 H 1.08994 * 109.47245 * 60.00036 * 10 9 7 33 33 H 0.97000 * 119.99810 * 359.97438 * 13 11 10 34 34 H 0.97005 * 119.99894 * 180.02562 * 17 16 14 35 35 H 0.96710 * 113.99879 * 89.99914 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2859 0.0221 -0.0059 6 6 3.6011 -1.1952 0.0004 7 6 4.3488 -2.4671 0.0009 8 8 3.7490 -3.5248 0.0013 9 7 5.6965 -2.4566 0.0008 10 6 6.4388 -3.7196 0.0007 11 6 7.9183 -3.4326 0.0012 12 8 8.3136 -2.2860 0.0011 13 7 8.8021 -4.4502 0.0017 14 6 10.1479 -4.1891 0.0017 15 1 10.4999 -3.1681 0.0008 16 6 11.0591 -5.2382 0.0017 17 7 10.6307 -6.4805 0.0023 18 14 12.8929 -4.8825 0.0023 19 1 13.3784 -4.7886 1.4026 20 1 13.6099 -5.9785 -0.6976 21 1 13.1482 -3.5978 -0.6974 22 6 2.1994 -1.2015 0.0005 23 8 1.5233 -2.3775 0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3635 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6528 2.1295 -0.0004 28 1 4.1121 2.1476 -0.0009 29 1 5.3658 0.0350 -0.0105 30 1 6.1749 -1.6128 0.0007 31 1 6.1800 -4.2931 0.8907 32 1 6.1799 -4.2932 -0.8892 33 1 8.4858 -5.3672 0.0022 34 1 11.2668 -7.2129 0.0027 35 1 1.3269 -2.7191 -0.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436712088.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:29 Heat of formation + Delta-G solvation = -119.539544 kcal Electronic energy + Delta-G solvation = -20534.143470 eV Core-core repulsion = 17110.082499 eV Total energy + Delta-G solvation = -3424.060971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60392 -40.43720 -39.45667 -37.66809 -36.26316 -35.33556 -33.79292 -33.37377 -31.32960 -29.30408 -27.69917 -26.56886 -24.54484 -22.76796 -21.43251 -21.33307 -20.13626 -19.36194 -18.68905 -17.53971 -17.31058 -16.87487 -16.59810 -16.36295 -16.25272 -15.82075 -15.53139 -15.31361 -15.04907 -14.36476 -14.17731 -13.85957 -13.65804 -13.56360 -13.28541 -13.10729 -12.92728 -12.77631 -12.47475 -12.41612 -12.13129 -11.72586 -11.58971 -10.90756 -10.59491 -10.31339 -10.11799 -9.84942 -9.56315 -8.52790 -6.03332 -0.24095 0.24161 1.35269 1.42094 1.54895 1.78127 1.88742 1.95270 2.30166 2.69438 3.07666 3.14290 3.25562 3.62237 3.78276 4.01213 4.17715 4.28716 4.32906 4.36928 4.38248 4.66122 4.75401 4.84960 4.86150 5.18698 5.20371 5.28554 5.36665 5.38652 5.45818 5.81556 5.89421 6.41598 6.47710 6.79715 7.00974 7.08908 7.41200 7.91044 8.64186 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.003158 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.313984 B = 8864.105120 C = 9497.415814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 C -0.071 4.071 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.185 4.185 7 C 0.553 3.447 8 O -0.563 6.563 9 N -0.705 5.705 10 C 0.122 3.878 11 C 0.433 3.567 12 O -0.623 6.623 13 N -0.558 5.558 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.269 1.269 22 C 0.148 3.852 23 O -0.491 6.491 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.161 0.839 29 H 0.133 0.867 30 H 0.412 0.588 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.643 13.574 -1.799 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.129 4.129 3 C -0.089 4.089 4 C -0.147 4.147 5 C -0.102 4.102 6 C -0.189 4.189 7 C 0.342 3.658 8 O -0.443 6.443 9 N -0.360 5.360 10 C -0.006 4.006 11 C 0.220 3.780 12 O -0.512 6.512 13 N -0.193 5.193 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.193 1.193 22 C 0.102 3.898 23 O -0.304 6.304 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.184 0.816 28 H 0.179 0.821 29 H 0.151 0.849 30 H 0.251 0.749 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -17.641 13.395 -1.205 22.183 hybrid contribution 1.225 -0.666 -0.434 1.460 sum -16.416 12.729 -1.638 20.838 Atomic orbital electron populations 1.20726 0.88334 1.03839 1.03500 1.20539 0.98428 0.91630 1.02331 1.21587 0.94113 0.98156 0.95067 1.21466 0.94677 0.98379 1.00210 1.21495 1.00627 0.91507 0.96589 1.20348 0.94252 0.93094 1.11188 1.18507 0.81500 0.89598 0.76150 1.90753 1.69054 1.33216 1.51269 1.45642 1.05887 1.09962 1.74526 1.20787 0.88207 0.87343 1.04264 1.20352 0.88399 0.85553 0.83727 1.90461 1.80608 1.21981 1.58104 1.41842 1.05947 1.08257 1.63273 1.19756 0.81753 0.94740 1.50468 0.89468 1.26158 1.05093 0.94209 0.95688 1.69685 1.37638 0.99133 1.49177 0.84850 0.76109 0.78182 0.78741 1.19542 1.19610 1.19331 1.18557 0.87882 0.86472 0.96915 1.84674 1.75373 1.35796 1.34516 0.89740 0.91787 0.89327 0.81577 0.82133 0.84879 0.74882 0.88945 0.88583 0.76694 0.91017 0.73675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.79 71.23 0.70 -0.64 16 2 C -0.13 -2.33 5.89 -19.80 -0.12 -2.45 16 3 C -0.07 -1.01 9.68 22.30 0.22 -0.79 16 4 C -0.13 -2.10 10.02 22.24 0.22 -1.88 16 5 C -0.08 -1.90 9.54 22.52 0.21 -1.68 16 6 C -0.19 -5.23 5.89 -20.01 -0.12 -5.35 16 7 C 0.55 19.25 7.76 86.70 0.67 19.92 16 8 O -0.56 -22.42 15.16 16.92 0.26 -22.17 16 9 N -0.71 -24.93 5.48 -470.00 -2.57 -27.50 16 10 C 0.12 4.65 6.15 85.63 0.53 5.17 16 11 C 0.43 20.33 7.85 87.66 0.69 21.02 16 12 O -0.62 -32.46 15.24 -3.06 -0.05 -32.51 16 13 N -0.56 -28.35 5.29 -306.98 -1.62 -29.97 16 14 C -0.34 -18.71 9.68 84.04 0.81 -17.89 16 15 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 16 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 17 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 18 Si 1.00 41.78 29.55 68.60 2.03 43.80 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 C 0.15 3.73 6.69 22.84 0.15 3.88 16 23 O -0.49 -12.86 10.62 -68.78 -0.73 -13.59 16 24 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.96 7.53 -2.39 -0.02 0.94 16 26 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 27 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.13 2.97 6.40 -2.91 -0.02 2.95 16 30 H 0.41 14.13 5.47 -92.71 -0.51 13.62 16 31 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 34 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 35 H 0.40 7.68 9.06 -74.05 -0.67 7.00 16 Total: -1.00 -70.90 310.61 1.29 -69.62 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.74 Total: 41.77 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 4.44 Total: 19.22 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.91 Total: -106.14 kcal Atomic # 8 Polarization: -67.74 SS G_CDS: -0.52 Total: -68.27 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -70.90 1.29 -69.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436712088.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.923 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds