Wall clock time and date at job start Tue Mar 31 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38551 * 119.80433 * 2 1 4 4 C 1.37789 * 120.30055 * 179.97438 * 3 2 1 5 5 C 1.39703 * 119.90843 * 0.02562 * 4 3 2 6 6 C 1.47535 * 120.19256 * 179.97438 * 5 4 3 7 7 O 1.21591 * 120.00143 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99828 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99968 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47476 * 179.97438 * 9 8 6 11 11 O 1.21293 * 119.99405 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00199 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99683 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00359 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99713 * 180.02562 * 13 12 10 16 16 N 1.31406 * 120.00297 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99997 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47023 * 90.00094 * 17 15 13 19 19 H 1.48500 * 109.47133 * 209.99998 * 17 15 13 20 20 H 1.48504 * 109.47271 * 330.00248 * 17 15 13 21 21 C 1.40145 * 119.61662 * 0.02562 * 5 4 3 22 22 O 1.35658 * 120.14727 * 179.72366 * 21 5 4 23 23 C 1.38057 * 119.80903 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.47418 * 89.99469 * 1 2 3 25 25 H 1.09002 * 109.46710 * 210.00122 * 1 2 3 26 26 H 1.08999 * 109.46960 * 329.99243 * 1 2 3 27 27 H 1.08005 * 119.85068 * 359.96068 * 3 2 1 28 28 H 1.07996 * 120.04712 * 179.97438 * 4 3 2 29 29 H 0.97002 * 120.00137 * 359.97438 * 8 6 5 30 30 H 1.09004 * 109.47034 * 299.99569 * 9 8 6 31 31 H 1.09000 * 109.47639 * 59.99830 * 9 8 6 32 32 H 0.96999 * 119.99945 * 0.02562 * 12 10 9 33 33 H 0.96999 * 120.00427 * 179.97438 * 16 15 13 34 34 H 0.96703 * 113.99494 * 90.00297 * 22 21 5 35 35 H 1.08006 * 119.94981 * 0.04160 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5735 1.2142 0.0005 5 6 4.2805 0.0093 0.0005 6 6 5.7559 0.0147 0.0005 7 8 6.3678 -1.0360 0.0001 8 7 6.4254 1.1844 0.0010 9 6 7.8904 1.1899 0.0005 10 6 8.3875 2.6126 0.0006 11 8 7.5958 3.5315 0.0006 12 7 9.7116 2.8637 0.0007 13 6 10.1637 4.1580 0.0013 14 1 9.4589 4.9763 0.0013 15 6 11.5289 4.4170 0.0008 16 7 12.3866 3.4214 -0.0007 17 14 12.1451 6.1804 0.0010 18 1 12.3089 6.6474 1.4011 19 1 13.4527 6.2480 -0.6996 20 1 11.1634 7.0479 -0.6984 21 6 3.5803 -1.2047 -0.0006 22 8 4.2560 -2.3810 -0.0062 23 6 2.1933 -1.1979 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6500 2.1343 -0.0006 28 1 4.1061 2.1537 0.0001 29 1 5.9373 2.0227 0.0010 30 1 8.2560 0.6768 0.8901 31 1 8.2554 0.6780 -0.8899 32 1 10.3447 2.1288 0.0003 33 1 13.3396 3.6021 -0.0015 34 1 4.4548 -2.7245 0.8756 35 1 1.6493 -2.1310 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436717064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:34 Heat of formation + Delta-G solvation = -120.747483 kcal Electronic energy + Delta-G solvation = -20436.534932 eV Core-core repulsion = 17012.421581 eV Total energy + Delta-G solvation = -3424.113351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.57646 -40.40983 -39.42710 -37.89162 -36.26426 -35.35218 -33.71290 -33.35421 -30.94144 -29.79015 -28.03119 -26.33637 -23.74894 -23.34193 -21.49074 -21.40855 -20.15915 -19.37248 -18.63154 -17.54191 -17.33962 -16.81341 -16.57442 -16.27066 -16.14403 -15.93057 -15.43009 -15.41199 -14.98067 -14.50108 -14.38231 -13.91841 -13.64829 -13.56212 -13.38469 -12.99957 -12.92021 -12.63689 -12.47305 -12.37743 -12.13188 -11.77765 -11.58727 -10.92744 -10.59200 -10.29543 -10.11429 -9.89353 -9.60093 -8.52613 -6.03169 -0.26792 0.25210 1.35417 1.42212 1.55032 1.76687 1.88747 1.96232 2.30409 2.67862 3.08051 3.14461 3.21647 3.62818 3.78648 3.96255 4.17197 4.26803 4.33917 4.38266 4.38859 4.59214 4.70375 4.88247 4.96623 5.19311 5.20757 5.23054 5.27733 5.36862 5.51260 5.79638 5.89625 6.42057 6.48132 6.79490 7.01162 7.09706 7.41469 7.91286 8.64370 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.003173 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.272290 B = 8823.451832 C = 9571.755273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.038 4.038 3 C -0.139 4.139 4 C -0.069 4.069 5 C -0.197 4.197 6 C 0.554 3.446 7 O -0.564 6.564 8 N -0.706 5.706 9 C 0.122 3.878 10 C 0.433 3.567 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.087 0.913 15 C -0.011 4.011 16 N -0.917 5.917 17 Si 0.998 3.002 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.269 1.269 21 C 0.158 3.842 22 O -0.496 6.496 23 C -0.160 4.160 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.135 0.865 29 H 0.412 0.588 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.407 0.593 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.158 -7.373 1.746 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.038 4.038 3 C -0.156 4.156 4 C -0.088 4.088 5 C -0.200 4.200 6 C 0.343 3.657 7 O -0.444 6.444 8 N -0.360 5.360 9 C -0.006 4.006 10 C 0.220 3.780 11 O -0.512 6.512 12 N -0.193 5.193 13 C -0.467 4.467 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.194 1.194 21 C 0.112 3.888 22 O -0.308 6.308 23 C -0.179 4.179 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.176 0.824 28 H 0.153 0.847 29 H 0.251 0.749 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.267 0.733 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.009 -7.454 1.148 22.322 hybrid contribution 1.196 0.618 0.441 1.416 sum -19.813 -6.836 1.589 21.020 Atomic orbital electron populations 1.20965 0.87888 1.04607 1.03878 1.20422 0.98238 0.91796 0.93349 1.21345 0.92939 0.99517 1.01835 1.21469 0.95601 0.96348 0.95386 1.20331 0.91724 0.95652 1.12334 1.18490 0.88071 0.82992 0.76106 1.90752 1.70323 1.31962 1.51380 1.45637 1.06260 1.09572 1.74572 1.20789 0.81600 0.93956 1.04265 1.20353 0.83079 0.90874 0.83713 1.90461 1.55375 1.47215 1.58103 1.41840 1.05426 1.08781 1.63281 1.19756 0.91936 0.84557 1.50465 0.89461 1.26157 0.95304 1.03997 0.95691 1.69679 1.03473 1.33310 1.49186 0.84851 0.77672 0.76599 0.78763 1.19468 1.19655 1.19359 1.18714 0.90466 0.84235 0.95418 1.84697 1.76655 1.34643 1.34849 1.21518 0.91750 1.00196 1.04409 0.89480 0.89901 0.89625 0.82398 0.84696 0.74897 0.88583 0.88948 0.76695 0.91017 0.73320 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.00 71.24 0.71 -0.21 16 2 C -0.04 -0.57 5.88 -19.83 -0.12 -0.69 16 3 C -0.14 -2.36 9.67 22.24 0.22 -2.14 16 4 C -0.07 -1.59 9.54 22.52 0.21 -1.37 16 5 C -0.20 -5.56 5.89 -20.01 -0.12 -5.68 16 6 C 0.55 19.28 7.76 86.70 0.67 19.95 16 7 O -0.56 -22.49 15.16 16.91 0.26 -22.24 16 8 N -0.71 -24.92 5.48 -470.00 -2.57 -27.49 16 9 C 0.12 4.64 6.15 85.64 0.53 5.17 16 10 C 0.43 20.33 7.85 87.66 0.69 21.01 16 11 O -0.62 -32.43 15.24 -3.07 -0.05 -32.48 16 12 N -0.56 -28.35 5.29 -306.98 -1.62 -29.97 16 13 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 14 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 17 Si 1.00 41.76 29.55 68.60 2.03 43.79 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C 0.16 3.98 6.72 22.84 0.15 4.13 16 22 O -0.50 -13.07 11.58 -68.82 -0.80 -13.86 16 23 C -0.16 -2.92 9.62 22.34 0.21 -2.70 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 26 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.14 3.01 6.40 -2.91 -0.02 2.99 16 29 H 0.41 14.09 5.47 -92.71 -0.51 13.59 16 30 H 0.10 3.46 8.14 -2.38 -0.02 3.45 16 31 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 33 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.41 7.60 9.06 -74.06 -0.67 6.93 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -70.86 311.93 1.23 -69.63 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -0.74 Total: 41.82 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 4.45 Total: 19.49 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.91 Total: -106.16 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -0.59 Total: -68.58 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.86 1.23 -69.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436717064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.113 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds