Wall clock time and date at job start Tue Mar 31 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00229 * 2 1 4 4 O 1.20824 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00143 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.36790 * 120.00030 * 280.20859 * 6 5 3 8 8 H 1.08001 * 119.99633 * 316.31650 * 7 6 5 9 9 C 1.39104 * 120.00280 * 136.31198 * 7 6 5 10 10 N 1.31329 * 119.99786 * 337.94769 * 9 7 6 11 11 Si 1.86796 * 120.00057 * 157.94683 * 9 7 6 12 12 H 1.48497 * 109.47061 * 65.00474 * 11 9 7 13 13 H 1.48501 * 109.46777 * 185.00432 * 11 9 7 14 14 H 1.48500 * 109.47173 * 305.00293 * 11 9 7 15 15 C 1.34773 * 119.99988 * 100.20765 * 6 5 3 16 16 O 1.21560 * 120.00066 * 186.63919 * 15 6 5 17 17 C 1.47993 * 120.00287 * 6.63487 * 15 6 5 18 18 C 1.39937 * 120.92649 * 321.05820 * 17 15 6 19 19 C 1.38083 * 118.98808 * 179.97438 * 18 17 15 20 20 N 1.31854 * 120.90801 * 359.97438 * 19 18 17 21 21 C 1.31824 * 122.06660 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.54545 * 179.97438 * 21 20 19 23 23 C 1.38128 * 120.90536 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46564 * 300.00278 * 1 2 3 26 26 H 1.08999 * 109.46765 * 60.00272 * 1 2 3 27 27 H 1.09000 * 109.47330 * 60.00105 * 5 3 2 28 28 H 1.09003 * 109.47124 * 299.99585 * 5 3 2 29 29 H 0.96996 * 119.99887 * 185.05372 * 10 9 7 30 30 H 1.07995 * 120.50374 * 0.02562 * 18 17 15 31 31 H 1.07997 * 119.54421 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47272 * 90.00312 * 22 21 20 33 33 H 1.09001 * 109.46885 * 209.99424 * 22 21 20 34 34 H 1.08998 * 109.46942 * 329.99619 * 22 21 20 35 35 H 1.07990 * 120.50624 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 3.9740 3.3948 -1.1671 8 1 4.3568 2.9520 -2.0747 9 6 3.4728 4.6924 -1.1840 10 7 2.6350 5.0848 -0.2519 11 14 3.9916 5.8765 -2.5323 12 1 3.4947 5.3837 -3.8420 13 1 3.4190 7.2192 -2.2591 14 1 5.4733 5.9681 -2.5676 15 6 4.3717 3.2675 1.1473 16 8 4.6004 4.4612 1.1720 17 6 4.5213 2.4599 2.3784 18 6 3.6154 1.4376 2.6824 19 6 3.7932 0.7086 3.8416 20 7 4.7988 0.9647 4.6551 21 6 5.6746 1.9182 4.4068 22 6 6.8021 2.1625 5.3763 23 6 5.5729 2.6965 3.2701 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9558 0.7809 -0.8908 28 1 3.9565 0.7805 0.8892 29 1 2.2289 5.9641 -0.3039 30 1 2.7902 1.2215 2.0201 31 1 3.0992 -0.0821 4.0852 32 1 7.6598 1.5501 5.0980 33 1 7.0833 3.2153 5.3488 34 1 6.4788 1.8990 6.3834 35 1 6.2941 3.4756 3.0729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447505467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:45 Heat of formation + Delta-G solvation = -47.126455 kcal Electronic energy + Delta-G solvation = -22182.022201 eV Core-core repulsion = 18761.101297 eV Total energy + Delta-G solvation = -3420.920904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39695 -39.55129 -38.00067 -35.78601 -34.25654 -33.05914 -32.14636 -31.35998 -28.60439 -27.40415 -26.31831 -25.39141 -23.15712 -22.18330 -20.75574 -19.51447 -17.25955 -17.03487 -16.52448 -16.36788 -15.82879 -15.46748 -15.22906 -14.73396 -14.53179 -14.11473 -13.83680 -13.44088 -13.14952 -12.72930 -12.61240 -12.35344 -12.25546 -12.10974 -11.66849 -11.62531 -11.28421 -11.06465 -10.86823 -10.73185 -10.30611 -10.24903 -9.71534 -9.40132 -9.30496 -8.86416 -8.62288 -8.30876 -7.35877 -6.14760 -3.94424 1.33664 1.42437 2.93863 3.13221 3.28431 3.35929 3.38814 3.88702 4.17664 4.40519 4.52489 4.64554 5.09806 5.17353 5.30881 5.38123 5.39865 5.42919 5.47195 5.52746 5.63593 5.69266 5.71387 5.76810 5.86072 5.94905 6.03703 6.16334 6.35091 6.58711 6.95197 6.97273 7.52020 8.09670 8.23333 8.52018 8.83526 8.94495 9.45210 10.00905 10.90118 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.008117 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.638137 B = 3448.795116 C = 5064.961200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.377 6.377 3 C 0.418 3.582 4 O -0.446 6.446 5 C 0.095 3.905 6 N -0.416 5.416 7 C -0.366 4.366 8 H 0.086 0.914 9 C 0.081 3.919 10 N -0.791 5.791 11 Si 0.913 3.087 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.506 3.494 16 O -0.510 6.510 17 C -0.046 4.046 18 C -0.173 4.173 19 C 0.098 3.902 20 N -0.490 5.490 21 C 0.118 3.882 22 C -0.099 4.099 23 C -0.134 4.134 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.265 0.735 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 -10.407 4.753 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.295 6.295 3 C 0.256 3.744 4 O -0.327 6.327 5 C -0.031 4.031 6 N -0.138 5.138 7 C -0.492 4.492 8 H 0.103 0.897 9 C -0.135 4.135 10 N -0.420 5.420 11 Si 0.740 3.260 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.294 3.706 16 O -0.387 6.387 17 C -0.058 4.058 18 C -0.193 4.193 19 C -0.058 4.058 20 N -0.201 5.201 21 C -0.019 4.019 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.428 -9.722 5.622 11.321 hybrid contribution -0.609 1.053 -1.531 1.956 sum 0.819 -8.669 4.091 9.621 Atomic orbital electron populations 1.23081 0.77964 1.02509 1.02203 1.86540 1.22325 1.35162 1.85501 1.25049 0.93322 0.81485 0.74588 1.90836 1.65891 1.35344 1.40594 1.21758 0.86571 0.89778 1.04979 1.42898 1.55386 1.07362 1.08104 1.18937 1.45386 0.97054 0.87799 0.89667 1.25310 0.93195 0.98487 0.96479 1.69903 1.20951 1.19144 1.32021 0.86269 0.79467 0.79766 0.80509 1.20399 1.21072 1.19635 1.17756 0.82890 0.87474 0.82436 1.90651 1.51264 1.13683 1.83099 1.21032 0.94162 0.94245 0.96384 1.22562 1.00586 0.97038 0.99144 1.22561 0.94884 0.98317 0.90086 1.67340 1.03551 1.17460 1.31762 1.21167 0.95266 0.91536 0.93969 1.20665 0.94861 1.02311 0.97810 1.21981 0.98811 1.00513 0.94137 0.88972 0.92511 0.92393 0.88114 0.87321 0.92435 0.84984 0.82788 0.90615 0.90750 0.90727 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.25 10.56 -39.24 -0.41 -6.67 16 3 C 0.42 8.51 5.96 36.01 0.21 8.72 16 4 O -0.45 -11.14 15.90 -18.75 -0.30 -11.44 16 5 C 0.10 1.86 5.48 -5.19 -0.03 1.84 16 6 N -0.42 -10.34 2.11 -117.12 -0.25 -10.59 16 7 C -0.37 -9.89 8.85 -15.02 -0.13 -10.03 16 8 H 0.09 2.17 7.93 -52.49 -0.42 1.76 16 9 C 0.08 2.27 4.26 -17.45 -0.07 2.20 16 10 N -0.79 -23.74 11.75 55.50 0.65 -23.09 16 11 Si 0.91 21.77 29.61 -169.99 -5.03 16.74 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.51 12.97 6.85 -12.26 -0.08 12.89 16 16 O -0.51 -15.06 14.44 5.31 0.08 -14.99 16 17 C -0.05 -0.97 5.36 -104.64 -0.56 -1.53 16 18 C -0.17 -3.14 7.47 -39.00 -0.29 -3.43 16 19 C 0.10 1.54 11.17 -17.60 -0.20 1.35 16 20 N -0.49 -8.03 10.25 -9.53 -0.10 -8.13 16 21 C 0.12 1.88 6.78 -82.64 -0.56 1.32 16 22 C -0.10 -1.16 10.17 36.01 0.37 -0.79 16 23 C -0.13 -2.45 9.39 -39.00 -0.37 -2.81 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 27 H 0.10 1.73 8.12 -51.93 -0.42 1.31 16 28 H 0.11 1.87 4.44 -51.93 -0.23 1.64 16 29 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.13 2.44 4.26 -52.49 -0.22 2.21 16 31 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.14 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -35.41 306.17 -5.20 -40.61 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.80 Total: 1.65 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -0.65 Total: 11.28 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.31 Total: -41.81 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.64 Total: -33.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.41 -5.20 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447505467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.520 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds