Wall clock time and date at job start Tue Mar 31 2020 00:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00229 * 2 1 4 4 O 1.20824 * 119.99941 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00143 * 180.02562 * 3 2 1 6 6 N 1.46508 * 109.47170 * 179.97438 * 5 3 2 7 7 C 1.36790 * 120.00030 * 280.20859 * 6 5 3 8 8 H 1.08001 * 119.99633 * 316.31650 * 7 6 5 9 9 C 1.39104 * 120.00280 * 136.31198 * 7 6 5 10 10 N 1.31329 * 119.99786 * 337.94769 * 9 7 6 11 11 Si 1.86796 * 120.00057 * 157.94683 * 9 7 6 12 12 H 1.48497 * 109.47061 * 65.00474 * 11 9 7 13 13 H 1.48501 * 109.46777 * 185.00432 * 11 9 7 14 14 H 1.48500 * 109.47173 * 305.00293 * 11 9 7 15 15 C 1.34773 * 119.99988 * 100.20765 * 6 5 3 16 16 O 1.21560 * 120.00066 * 186.63919 * 15 6 5 17 17 C 1.47993 * 120.00287 * 6.63487 * 15 6 5 18 18 C 1.39937 * 120.92649 * 321.05820 * 17 15 6 19 19 C 1.38083 * 118.98808 * 179.97438 * 18 17 15 20 20 N 1.31854 * 120.90801 * 359.97438 * 19 18 17 21 21 C 1.31824 * 122.06660 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.54545 * 179.97438 * 21 20 19 23 23 C 1.38128 * 120.90536 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46564 * 300.00278 * 1 2 3 26 26 H 1.08999 * 109.46765 * 60.00272 * 1 2 3 27 27 H 1.09000 * 109.47330 * 60.00105 * 5 3 2 28 28 H 1.09003 * 109.47124 * 299.99585 * 5 3 2 29 29 H 0.96996 * 119.99887 * 185.05372 * 10 9 7 30 30 H 1.07995 * 120.50374 * 0.02562 * 18 17 15 31 31 H 1.07997 * 119.54421 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47272 * 90.00312 * 22 21 20 33 33 H 1.09001 * 109.46885 * 209.99424 * 22 21 20 34 34 H 1.08998 * 109.46942 * 329.99619 * 22 21 20 35 35 H 1.07990 * 120.50624 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 3.9740 3.3948 -1.1671 8 1 4.3568 2.9520 -2.0747 9 6 3.4728 4.6924 -1.1840 10 7 2.6350 5.0848 -0.2519 11 14 3.9916 5.8765 -2.5323 12 1 3.4947 5.3837 -3.8420 13 1 3.4190 7.2192 -2.2591 14 1 5.4733 5.9681 -2.5676 15 6 4.3717 3.2675 1.1473 16 8 4.6004 4.4612 1.1720 17 6 4.5213 2.4599 2.3784 18 6 3.6154 1.4376 2.6824 19 6 3.7932 0.7086 3.8416 20 7 4.7988 0.9647 4.6551 21 6 5.6746 1.9182 4.4068 22 6 6.8021 2.1625 5.3763 23 6 5.5729 2.6965 3.2701 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.9558 0.7809 -0.8908 28 1 3.9565 0.7805 0.8892 29 1 2.2289 5.9641 -0.3039 30 1 2.7902 1.2215 2.0201 31 1 3.0992 -0.0821 4.0852 32 1 7.6598 1.5501 5.0980 33 1 7.0833 3.2153 5.3488 34 1 6.4788 1.8990 6.3834 35 1 6.2941 3.4756 3.0729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447505467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:44 Heat of formation + Delta-G solvation = -71.401630 kcal Electronic energy + Delta-G solvation = -22183.074851 eV Core-core repulsion = 18761.101297 eV Total energy + Delta-G solvation = -3421.973554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94896 -41.02672 -39.74476 -37.38499 -36.15414 -34.68201 -33.57834 -33.04916 -30.15827 -28.56330 -27.79883 -27.14193 -24.77753 -23.57444 -22.32202 -21.24488 -19.02542 -18.61265 -18.17349 -17.88765 -17.27532 -17.01385 -16.71477 -16.56301 -16.08153 -15.56865 -15.40652 -14.99711 -14.60330 -14.28182 -14.08421 -14.01795 -13.51660 -13.25034 -13.05781 -13.03544 -12.87882 -12.73014 -12.69753 -12.50324 -12.19718 -11.66413 -11.42795 -11.02495 -10.84670 -10.70392 -10.17976 -9.90300 -9.35622 -8.21752 -6.04474 -0.12743 0.07389 1.34138 1.35945 1.44554 1.48549 1.66022 2.27304 2.36991 2.79648 2.85379 3.22649 3.35320 3.70342 3.83404 3.96378 4.04370 4.10091 4.16652 4.36597 4.40174 4.43098 4.44090 4.63728 4.73184 4.74845 4.83904 5.03976 5.15771 5.19852 5.43421 5.46657 5.67210 6.07068 6.83468 6.91639 6.94382 7.03418 7.46145 8.07086 8.83630 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.008117 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.638137 B = 3448.795116 C = 5064.961200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.428 3.572 4 O -0.500 6.500 5 C 0.092 3.908 6 N -0.430 5.430 7 C -0.382 4.382 8 H 0.095 0.905 9 C 0.029 3.971 10 N -0.836 5.836 11 Si 0.972 3.028 12 H -0.258 1.258 13 H -0.291 1.291 14 H -0.271 1.271 15 C 0.497 3.503 16 O -0.566 6.566 17 C -0.072 4.072 18 C -0.178 4.178 19 C 0.114 3.886 20 N -0.490 5.490 21 C 0.128 3.872 22 C -0.098 4.098 23 C -0.144 4.144 24 H 0.141 0.859 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.256 0.744 30 H 0.128 0.872 31 H 0.197 0.803 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -13.146 5.735 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.269 3.731 4 O -0.385 6.385 5 C -0.033 4.033 6 N -0.150 5.150 7 C -0.509 4.509 8 H 0.113 0.887 9 C -0.181 4.181 10 N -0.467 5.467 11 Si 0.797 3.203 12 H -0.183 1.183 13 H -0.217 1.217 14 H -0.196 1.196 15 C 0.286 3.714 16 O -0.447 6.447 17 C -0.083 4.083 18 C -0.199 4.199 19 C -0.042 4.042 20 N -0.201 5.201 21 C -0.009 4.009 22 C -0.155 4.155 23 C -0.165 4.165 24 H 0.159 0.841 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.213 0.787 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.980 -12.542 6.580 14.301 hybrid contribution -0.778 1.692 -1.722 2.536 sum 1.202 -10.850 4.858 11.949 Atomic orbital electron populations 1.23449 0.75728 1.05476 1.01667 1.86505 1.24283 1.32628 1.84573 1.24947 0.93456 0.81631 0.73090 1.90839 1.66988 1.37298 1.43352 1.21925 0.86620 0.87143 1.07581 1.43013 1.55501 1.09034 1.07487 1.19301 1.44954 0.97708 0.88906 0.88714 1.26186 0.93038 1.00260 0.98626 1.70061 1.23155 1.18916 1.34611 0.85352 0.78811 0.77393 0.78778 1.18260 1.21721 1.19588 1.18502 0.81533 0.87380 0.83942 1.90591 1.53475 1.16160 1.84428 1.20777 0.96599 0.95416 0.95512 1.22530 1.00009 0.96924 1.00403 1.23149 0.94759 0.97969 0.88320 1.67538 1.03656 1.17328 1.31541 1.21756 0.95755 0.90041 0.93353 1.20806 0.93893 1.03602 0.97187 1.22097 0.98458 1.01211 0.94765 0.84122 0.92845 0.93318 0.85491 0.84646 0.93456 0.85444 0.78661 0.88434 0.89650 0.89412 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.36 -11.28 10.56 -51.35 -0.54 -11.82 16 3 C 0.43 17.25 5.96 71.24 0.42 17.68 16 4 O -0.50 -25.55 15.90 21.97 0.35 -25.21 16 5 C 0.09 3.55 5.48 85.63 0.47 4.02 16 6 N -0.43 -21.82 2.11 -642.73 -1.36 -23.17 16 7 C -0.38 -21.19 8.85 84.13 0.74 -20.44 16 8 H 0.10 4.88 7.93 -2.91 -0.02 4.86 16 9 C 0.03 1.70 4.26 84.98 0.36 2.06 16 10 N -0.84 -52.74 11.75 21.69 0.25 -52.48 16 11 Si 0.97 46.12 29.61 68.60 2.03 48.15 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 C 0.50 26.33 6.85 86.83 0.59 26.93 16 16 O -0.57 -35.15 14.44 -3.91 -0.06 -35.21 16 17 C -0.07 -3.01 5.36 -19.88 -0.11 -3.11 16 18 C -0.18 -6.23 7.47 22.64 0.17 -6.06 16 19 C 0.11 3.22 11.17 84.65 0.95 4.17 16 20 N -0.49 -14.38 10.25 -184.08 -1.89 -16.27 16 21 C 0.13 3.78 6.78 42.53 0.29 4.06 16 22 C -0.10 -1.97 10.17 71.24 0.72 -1.24 16 23 C -0.14 -5.22 9.39 22.64 0.21 -5.01 16 24 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 26 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 27 H 0.13 4.17 8.12 -2.39 -0.02 4.15 16 28 H 0.14 4.47 4.44 -2.39 -0.01 4.46 16 29 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.13 4.57 4.26 -2.91 -0.01 4.55 16 31 H 0.20 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.14 4.87 8.06 -2.92 -0.02 4.85 16 Total: -1.00 -81.53 306.17 5.94 -75.59 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.12 Total: 15.41 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 6.02 Total: 25.00 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.99 Total: -91.92 kcal Atomic # 8 Polarization: -71.99 SS G_CDS: -0.25 Total: -72.23 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -81.53 5.94 -75.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447505467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.189 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds