Wall clock time and date at job start Tue Mar 31 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 117.00374 * 2 1 4 4 O 1.20832 * 119.99661 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00521 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47314 * 179.97438 * 5 3 2 7 7 C 1.36789 * 119.99830 * 263.94076 * 6 5 3 8 8 H 1.08000 * 119.99980 * 201.11573 * 7 6 5 9 9 C 1.39107 * 120.00185 * 21.11449 * 7 6 5 10 10 N 1.31318 * 119.99941 * 5.13599 * 9 7 6 11 11 Si 1.86797 * 119.99935 * 185.13381 * 9 7 6 12 12 H 1.48500 * 109.47265 * 90.00371 * 11 9 7 13 13 H 1.48501 * 109.47021 * 210.00001 * 11 9 7 14 14 H 1.48502 * 109.47198 * 329.99751 * 11 9 7 15 15 C 1.34780 * 120.00331 * 83.94034 * 6 5 3 16 16 O 1.21563 * 119.99613 * 4.42862 * 15 6 5 17 17 C 1.47989 * 120.00087 * 184.42664 * 15 6 5 18 18 C 1.39930 * 120.92998 * 52.31941 * 17 15 6 19 19 C 1.38080 * 118.99493 * 179.97438 * 18 17 15 20 20 N 1.31858 * 120.90360 * 359.97320 * 19 18 17 21 21 C 1.31828 * 122.06592 * 0.02562 * 20 19 18 22 22 C 1.38126 * 120.90459 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.50490 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47546 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47339 * 300.00078 * 1 2 3 26 26 H 1.08998 * 109.47383 * 60.00023 * 1 2 3 27 27 H 1.09002 * 109.47415 * 59.99237 * 5 3 2 28 28 H 1.09005 * 109.46672 * 299.99614 * 5 3 2 29 29 H 0.96995 * 119.99951 * 179.97438 * 10 9 7 30 30 H 1.07999 * 120.50548 * 359.97438 * 18 17 15 31 31 H 1.07991 * 119.55058 * 180.02562 * 19 18 17 32 32 H 1.08002 * 119.54479 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46937 * 274.56957 * 23 22 21 34 34 H 1.08998 * 109.46743 * 34.56520 * 23 22 21 35 35 H 1.08998 * 109.47203 * 154.56757 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.2950 3.2998 -1.1794 8 1 4.9103 4.1873 -1.1755 9 6 3.8213 2.7872 -2.3826 10 7 2.9918 1.7691 -2.3814 11 14 4.3649 3.5471 -4.0002 12 1 5.5936 2.8647 -4.4795 13 1 3.2860 3.3896 -5.0084 14 1 4.6471 4.9911 -3.7986 15 6 4.0550 3.3612 1.1594 16 8 3.8550 2.7897 2.2135 17 6 4.3792 4.8051 1.1503 18 6 3.6585 5.6990 0.3506 19 6 3.9945 7.0381 0.3735 20 7 4.9778 7.4767 1.1347 21 6 5.6818 6.6692 1.9028 22 6 5.4146 5.3145 1.9411 23 6 6.2248 4.3996 2.8229 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.9557 0.7808 -0.8907 28 1 3.9563 0.7806 0.8892 29 1 2.6612 1.4119 -3.2204 30 1 2.8516 5.3470 -0.2750 31 1 3.4439 7.7359 -0.2399 32 1 6.4790 7.0722 2.5099 33 1 7.1268 4.0907 2.2946 34 1 6.5011 4.9264 3.7363 35 1 5.6325 3.5202 3.0756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000471819605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:35 Heat of formation + Delta-G solvation = -71.172146 kcal Electronic energy + Delta-G solvation = -22302.755879 eV Core-core repulsion = 18880.792276 eV Total energy + Delta-G solvation = -3421.963603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11049 -39.31686 -38.03040 -35.58696 -34.78777 -32.90674 -31.89579 -31.37747 -28.61569 -26.97526 -26.30508 -25.08907 -23.42080 -21.74486 -20.44932 -19.51362 -17.97983 -16.70227 -16.59425 -15.92074 -15.52547 -15.42023 -15.09806 -14.58279 -14.46157 -14.03372 -13.70251 -13.37573 -12.90123 -12.83903 -12.56750 -12.47017 -12.28314 -11.79077 -11.63665 -11.38587 -11.33235 -10.98406 -10.93088 -10.73472 -10.54538 -9.91209 -9.74414 -9.44541 -9.15297 -8.98143 -8.58779 -8.43579 -8.12269 -6.62016 -4.20151 1.52663 1.63509 3.00145 3.10358 3.13329 3.38653 3.60161 3.83109 3.96714 4.27385 4.49199 4.86096 4.87435 5.29848 5.40826 5.52821 5.59921 5.64868 5.72462 5.87983 5.94916 6.01301 6.10568 6.16839 6.25701 6.32112 6.47239 6.61815 6.70210 6.90537 7.15100 7.19680 7.33721 7.46280 8.09596 8.38361 8.80161 8.98578 9.14926 9.54365 10.41754 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.008049 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.059656 B = 3477.724654 C = 4567.424144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.372 6.372 3 C 0.490 3.510 4 O -0.509 6.509 5 C 0.152 3.848 6 N -0.414 5.414 7 C -0.328 4.328 8 H 0.103 0.897 9 C 0.041 3.959 10 N -0.877 5.877 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.267 1.267 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.040 4.040 18 C -0.114 4.114 19 C 0.074 3.926 20 N -0.485 5.485 21 C 0.081 3.919 22 C -0.106 4.106 23 C -0.123 4.123 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.139 0.861 28 H 0.080 0.920 29 H 0.276 0.724 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 0.501 1.883 2.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.331 3.669 4 O -0.394 6.394 5 C 0.027 3.973 6 N -0.131 5.131 7 C -0.455 4.455 8 H 0.121 0.879 9 C -0.164 4.164 10 N -0.516 5.516 11 Si 0.757 3.243 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.191 1.191 15 C 0.295 3.705 16 O -0.477 6.477 17 C -0.051 4.051 18 C -0.134 4.134 19 C -0.082 4.082 20 N -0.194 5.194 21 C -0.076 4.076 22 C -0.109 4.109 23 C -0.180 4.180 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.558 1.271 2.196 2.978 hybrid contribution -0.441 -0.463 -1.192 1.352 sum 1.117 0.809 1.005 1.706 Atomic orbital electron populations 1.22947 0.78629 1.01924 1.01625 1.86454 1.21692 1.35273 1.85544 1.23884 0.92228 0.80542 0.70203 1.90511 1.66661 1.36467 1.45806 1.20656 0.87228 0.85071 1.04318 1.43231 1.55580 1.08282 1.05980 1.19721 1.30804 1.12435 0.82564 0.87915 1.25312 0.94680 0.96278 1.00090 1.69637 1.29553 1.24017 1.28407 0.85830 0.78289 0.79679 0.80466 1.20014 1.20629 1.19126 1.17961 0.82728 0.85675 0.84168 1.90613 1.56620 1.69340 1.31091 1.20205 0.94900 0.95020 0.94979 1.22417 1.00314 0.93549 0.97113 1.22562 0.94776 0.93812 0.97070 1.67447 1.06275 1.39732 1.05995 1.22416 0.98552 0.89269 0.97384 1.20950 0.96343 0.95748 0.97859 1.20897 0.99450 1.00094 0.97519 0.89492 0.93112 0.92649 0.84315 0.90183 0.91310 0.83660 0.83029 0.83210 0.91390 0.91740 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.80 16 2 O -0.37 -7.83 10.56 -39.25 -0.41 -8.25 16 3 C 0.49 11.79 6.10 36.00 0.22 12.01 16 4 O -0.51 -13.65 15.90 -18.76 -0.30 -13.95 16 5 C 0.15 3.55 5.17 -5.20 -0.03 3.52 16 6 N -0.41 -10.08 2.17 -117.13 -0.25 -10.33 16 7 C -0.33 -7.89 8.02 -15.02 -0.12 -8.01 16 8 H 0.10 2.43 6.31 -52.49 -0.33 2.10 16 9 C 0.04 0.97 5.23 -17.45 -0.09 0.88 16 10 N -0.88 -21.46 8.73 55.50 0.48 -20.97 16 11 Si 0.93 18.80 29.56 -169.99 -5.02 13.77 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 15 C 0.51 12.19 6.42 -12.26 -0.08 12.11 16 16 O -0.59 -15.17 14.74 5.31 0.08 -15.09 16 17 C -0.04 -0.86 4.75 -104.65 -0.50 -1.35 16 18 C -0.11 -2.28 8.14 -39.01 -0.32 -2.60 16 19 C 0.07 1.30 11.17 -17.60 -0.20 1.10 16 20 N -0.49 -8.64 10.34 -13.32 -0.14 -8.78 16 21 C 0.08 1.36 10.87 -17.59 -0.19 1.17 16 22 C -0.11 -1.96 5.93 -104.05 -0.62 -2.58 16 23 C -0.12 -1.98 9.74 36.00 0.35 -1.63 16 24 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.14 3.22 6.15 -51.93 -0.32 2.90 16 28 H 0.08 1.75 7.55 -51.93 -0.39 1.35 16 29 H 0.28 6.49 8.31 -40.82 -0.34 6.16 16 30 H 0.15 3.09 7.62 -52.49 -0.40 2.69 16 31 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.09 1.76 5.63 -51.93 -0.29 1.46 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -30.02 303.78 -5.32 -35.34 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.83 Total: 7.28 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -0.50 Total: 16.42 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.09 Total: -40.09 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.63 Total: -37.30 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.02 -5.32 -35.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471819605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.836 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds