Wall clock time and date at job start Tue Mar 31 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34228 * 117.00374 * 2 1 4 4 O 1.20832 * 119.99661 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00521 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47314 * 179.97438 * 5 3 2 7 7 C 1.36789 * 119.99830 * 263.94076 * 6 5 3 8 8 H 1.08000 * 119.99980 * 201.11573 * 7 6 5 9 9 C 1.39107 * 120.00185 * 21.11449 * 7 6 5 10 10 N 1.31318 * 119.99941 * 5.13599 * 9 7 6 11 11 Si 1.86797 * 119.99935 * 185.13381 * 9 7 6 12 12 H 1.48500 * 109.47265 * 90.00371 * 11 9 7 13 13 H 1.48501 * 109.47021 * 210.00001 * 11 9 7 14 14 H 1.48502 * 109.47198 * 329.99751 * 11 9 7 15 15 C 1.34780 * 120.00331 * 83.94034 * 6 5 3 16 16 O 1.21563 * 119.99613 * 4.42862 * 15 6 5 17 17 C 1.47989 * 120.00087 * 184.42664 * 15 6 5 18 18 C 1.39930 * 120.92998 * 52.31941 * 17 15 6 19 19 C 1.38080 * 118.99493 * 179.97438 * 18 17 15 20 20 N 1.31858 * 120.90360 * 359.97320 * 19 18 17 21 21 C 1.31828 * 122.06592 * 0.02562 * 20 19 18 22 22 C 1.38126 * 120.90459 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.50490 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47546 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47339 * 300.00078 * 1 2 3 26 26 H 1.08998 * 109.47383 * 60.00023 * 1 2 3 27 27 H 1.09002 * 109.47415 * 59.99237 * 5 3 2 28 28 H 1.09005 * 109.46672 * 299.99614 * 5 3 2 29 29 H 0.96995 * 119.99951 * 179.97438 * 10 9 7 30 30 H 1.07999 * 120.50548 * 359.97438 * 18 17 15 31 31 H 1.07991 * 119.55058 * 180.02562 * 19 18 17 32 32 H 1.08002 * 119.54479 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.46937 * 274.56957 * 23 22 21 34 34 H 1.08998 * 109.46743 * 34.56520 * 23 22 21 35 35 H 1.08998 * 109.47203 * 154.56757 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.2950 3.2998 -1.1794 8 1 4.9103 4.1873 -1.1755 9 6 3.8213 2.7872 -2.3826 10 7 2.9918 1.7691 -2.3814 11 14 4.3649 3.5471 -4.0002 12 1 5.5936 2.8647 -4.4795 13 1 3.2860 3.3896 -5.0084 14 1 4.6471 4.9911 -3.7986 15 6 4.0550 3.3612 1.1594 16 8 3.8550 2.7897 2.2135 17 6 4.3792 4.8051 1.1503 18 6 3.6585 5.6990 0.3506 19 6 3.9945 7.0381 0.3735 20 7 4.9778 7.4767 1.1347 21 6 5.6818 6.6692 1.9028 22 6 5.4146 5.3145 1.9411 23 6 6.2248 4.3996 2.8229 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.9557 0.7808 -0.8907 28 1 3.9563 0.7806 0.8892 29 1 2.6612 1.4119 -3.2204 30 1 2.8516 5.3470 -0.2750 31 1 3.4439 7.7359 -0.2399 32 1 6.4790 7.0722 2.5099 33 1 7.1268 4.0907 2.2946 34 1 6.5011 4.9264 3.7363 35 1 5.6325 3.5202 3.0756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000471819605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:33 Heat of formation + Delta-G solvation = -89.248184 kcal Electronic energy + Delta-G solvation = -22303.539715 eV Core-core repulsion = 18880.792276 eV Total energy + Delta-G solvation = -3422.747439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.75109 -41.02282 -39.74564 -37.39966 -36.65859 -34.34213 -33.66482 -32.94733 -30.33583 -28.36044 -27.86492 -26.85365 -24.99411 -23.20511 -22.16175 -21.30595 -19.66257 -18.54359 -18.34027 -17.52029 -17.18766 -17.12014 -16.76892 -16.23679 -16.05713 -15.64074 -15.17560 -14.99045 -14.53135 -14.28295 -14.24368 -14.11449 -13.56977 -13.40586 -13.22206 -13.04699 -12.89325 -12.69461 -12.51464 -12.39900 -12.15417 -11.62729 -11.58756 -11.10976 -11.00805 -10.52688 -10.22651 -9.99041 -9.80480 -8.43196 -6.07327 0.00800 0.21624 1.38027 1.44418 1.54944 1.64472 1.76385 2.11658 2.28319 2.69933 2.87785 3.08706 3.57685 3.94469 3.96180 3.99476 4.13510 4.23904 4.33074 4.38524 4.48194 4.55510 4.68414 4.73638 4.79629 4.82099 4.89040 5.06429 5.23461 5.31040 5.44880 5.56783 5.65548 5.76823 6.24865 6.95663 6.98432 7.13696 7.31228 7.70815 8.60340 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.008049 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.059656 B = 3477.724654 C = 4567.424144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.544 6.544 5 C 0.150 3.850 6 N -0.423 5.423 7 C -0.339 4.339 8 H 0.104 0.896 9 C 0.004 3.996 10 N -0.898 5.898 11 Si 0.993 3.007 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.263 1.263 15 C 0.497 3.503 16 O -0.617 6.617 17 C -0.071 4.071 18 C -0.128 4.128 19 C 0.082 3.918 20 N -0.488 5.488 21 C 0.094 3.906 22 C -0.112 4.112 23 C -0.118 4.118 24 H 0.135 0.865 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.138 0.862 28 H 0.088 0.912 29 H 0.276 0.724 30 H 0.124 0.876 31 H 0.183 0.817 32 H 0.194 0.806 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 1.659 1.743 3.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.334 3.666 4 O -0.433 6.433 5 C 0.025 3.975 6 N -0.139 5.139 7 C -0.466 4.466 8 H 0.121 0.879 9 C -0.198 4.198 10 N -0.537 5.537 11 Si 0.817 3.183 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.187 1.187 15 C 0.288 3.712 16 O -0.506 6.506 17 C -0.082 4.082 18 C -0.149 4.149 19 C -0.073 4.073 20 N -0.197 5.197 21 C -0.064 4.064 22 C -0.114 4.114 23 C -0.175 4.175 24 H 0.153 0.847 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.200 0.800 32 H 0.210 0.790 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.630 2.407 2.057 4.116 hybrid contribution -0.819 -0.863 -1.084 1.610 sum 1.812 1.543 0.973 2.571 Atomic orbital electron populations 1.23314 0.76095 1.04975 1.01217 1.86423 1.24139 1.33557 1.84873 1.23983 0.92516 0.80792 0.69264 1.90482 1.67451 1.37734 1.47646 1.20703 0.87222 0.85155 1.04459 1.43415 1.55561 1.08621 1.06338 1.19876 1.31203 1.12741 0.82777 0.87857 1.26079 0.94485 0.96529 1.02665 1.69729 1.30202 1.24871 1.28913 0.84897 0.77851 0.79041 0.76529 1.19116 1.21010 1.18720 1.18463 0.82171 0.86931 0.83681 1.90569 1.57814 1.70357 1.31846 1.20236 0.97149 0.93581 0.97236 1.22297 1.00317 0.94737 0.97547 1.22940 0.94550 0.93038 0.96809 1.67594 1.06240 1.39731 1.06094 1.23048 0.98558 0.88227 0.96566 1.21274 0.95719 0.97054 0.97387 1.20892 0.98963 0.98842 0.98798 0.84694 0.93123 0.93510 0.84461 0.89466 0.91381 0.85842 0.80023 0.78955 0.90003 0.88205 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.56 113.37 1.20 2.44 16 2 O -0.37 -15.76 10.56 -51.39 -0.54 -16.31 16 3 C 0.49 24.26 6.10 71.23 0.43 24.69 16 4 O -0.54 -30.18 15.90 21.94 0.35 -29.83 16 5 C 0.15 7.19 5.17 85.63 0.44 7.63 16 6 N -0.42 -21.22 2.17 -642.75 -1.40 -22.62 16 7 C -0.34 -16.60 8.02 84.13 0.67 -15.92 16 8 H 0.10 4.94 6.31 -2.91 -0.02 4.93 16 9 C 0.00 0.20 5.23 84.98 0.44 0.65 16 10 N -0.90 -44.56 8.73 21.69 0.19 -44.37 16 11 Si 0.99 38.33 29.56 68.60 2.03 40.36 16 12 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 13 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 15 C 0.50 24.72 6.42 86.83 0.56 25.28 16 16 O -0.62 -32.88 14.74 -3.91 -0.06 -32.94 16 17 C -0.07 -3.08 4.75 -19.88 -0.09 -3.17 16 18 C -0.13 -5.20 8.14 22.64 0.18 -5.01 16 19 C 0.08 2.75 11.17 84.65 0.95 3.70 16 20 N -0.49 -15.94 10.34 -196.04 -2.03 -17.97 16 21 C 0.09 2.82 10.87 84.67 0.92 3.75 16 22 C -0.11 -3.96 5.93 -19.49 -0.12 -4.08 16 23 C -0.12 -3.62 9.74 71.24 0.69 -2.93 16 24 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 25 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 26 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 27 H 0.14 6.56 6.15 -2.39 -0.01 6.55 16 28 H 0.09 3.96 7.55 -2.38 -0.02 3.94 16 29 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 30 H 0.12 5.46 7.62 -2.91 -0.02 5.44 16 31 H 0.18 4.84 8.06 -2.92 -0.02 4.81 16 32 H 0.19 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.10 2.31 8.12 -2.39 -0.02 2.29 16 35 H 0.06 2.31 5.63 -2.39 -0.01 2.30 16 Total: -1.00 -66.07 303.78 5.95 -60.13 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.12 Total: 26.55 kcal Atomic # 6 Polarization: 30.72 SS G_CDS: 6.28 Total: 37.01 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.23 Total: -84.96 kcal Atomic # 8 Polarization: -78.82 SS G_CDS: -0.25 Total: -79.08 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -66.07 5.95 -60.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000471819605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.123 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds