Wall clock time and date at job start Tue Mar 31 2020 01:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47226 * 303.21337 * 3 2 1 5 5 C 1.37100 * 120.00074 * 264.13909 * 4 3 2 6 6 H 1.08003 * 119.99870 * 197.43010 * 5 4 3 7 7 C 1.38947 * 120.00065 * 17.43028 * 5 4 3 8 8 N 1.31416 * 119.99799 * 21.53770 * 7 5 4 9 9 Si 1.86798 * 120.00229 * 201.53423 * 7 5 4 10 10 H 1.48502 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47436 * 120.00122 * 9 7 5 12 12 H 1.48505 * 109.46988 * 240.00100 * 9 7 5 13 13 C 1.34781 * 120.00073 * 84.14139 * 4 3 2 14 14 O 1.21296 * 119.99909 * 180.02562 * 13 4 3 15 15 C 1.50695 * 119.99916 * 359.97438 * 13 4 3 16 16 O 1.42897 * 109.47243 * 180.02562 * 15 13 4 17 17 C 1.42895 * 114.00266 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47228 * 180.02562 * 17 16 15 19 19 N 1.30258 * 125.62130 * 90.02499 * 18 17 16 20 20 C 1.34473 * 108.70402 * 179.97438 * 19 18 17 21 21 C 1.34332 * 107.66876 * 0.26435 * 20 19 18 22 22 C 1.50697 * 126.44495 * 179.72938 * 21 20 19 23 23 O 1.33965 * 125.61910 * 269.97743 * 18 17 16 24 24 H 4.40636 * 5.51446 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47073 * 183.21351 * 3 2 1 26 26 H 1.09003 * 109.47394 * 63.21329 * 3 2 1 27 27 H 0.96998 * 119.99573 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47134 * 60.00148 * 15 13 4 29 29 H 1.08995 * 109.47077 * 300.00240 * 15 13 4 30 30 H 1.09002 * 109.47127 * 60.00043 * 17 16 15 31 31 H 1.09005 * 109.47088 * 300.00323 * 17 16 15 32 32 H 1.07994 * 126.16515 * 180.02562 * 20 19 18 33 33 H 1.09006 * 109.46743 * 90.00448 * 22 21 20 34 34 H 1.09000 * 109.47229 * 209.99567 * 22 21 20 35 35 H 1.08992 * 109.47223 * 330.00590 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7557 1.1556 5 6 3.4772 -0.0993 2.3094 6 1 4.0899 -0.5923 3.0497 7 6 3.0361 1.2003 2.5265 8 7 1.9844 1.6536 1.8819 9 14 3.9380 2.3033 3.7347 10 1 5.0801 1.5605 4.3255 11 1 4.4430 3.5060 3.0251 12 1 3.0074 2.7198 4.8144 13 6 3.2476 -2.0969 1.0843 14 8 3.6518 -2.7231 2.0413 15 6 2.8706 -2.8184 -0.1838 16 8 3.0758 -4.2222 -0.0121 17 6 2.7472 -5.0027 -1.1630 18 6 2.9999 -6.4594 -0.8710 19 7 2.1337 -7.2944 -0.3719 20 6 2.7163 -8.5005 -0.2533 21 6 3.9811 -8.3872 -0.6914 22 6 5.0134 -9.4840 -0.7399 23 8 4.1521 -7.1091 -1.0828 24 1 -1.0498 0.0000 0.0003 25 1 3.0089 1.0269 0.0576 26 1 3.0096 -0.4623 -0.9174 27 1 1.6768 2.5609 2.0332 28 1 3.4903 -2.4581 -1.0048 29 1 1.8213 -2.6301 -0.4108 30 1 3.3650 -4.6878 -2.0041 31 1 1.6954 -4.8593 -1.4111 32 1 2.2524 -9.3976 0.1293 33 1 4.9556 -9.9951 -1.7010 34 1 6.0072 -9.0534 -0.6167 35 1 4.8242 -10.1968 0.0626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491179156.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:33 Heat of formation + Delta-G solvation = 22.291375 kcal Electronic energy + Delta-G solvation = -20717.587929 eV Core-core repulsion = 17299.677208 eV Total energy + Delta-G solvation = -3417.910721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.35932 -38.91061 -37.29748 -35.09969 -34.75387 -32.83763 -32.17303 -31.25905 -29.56729 -27.45128 -26.32628 -25.19281 -24.06750 -22.35170 -21.12910 -19.40633 -17.94516 -17.40801 -16.98915 -16.67828 -16.26062 -15.83998 -15.60055 -14.94246 -14.57520 -14.32084 -13.98117 -13.86901 -13.44833 -13.31964 -12.77880 -12.63879 -12.48002 -12.28521 -11.75672 -11.58670 -11.53957 -11.30834 -11.02446 -10.56006 -10.49840 -10.33073 -9.61623 -9.40683 -9.27847 -8.94405 -8.81504 -8.39765 -7.90000 -6.35717 -3.88163 1.27992 2.43179 2.63517 3.12825 3.25378 3.31868 3.54653 3.73091 3.88360 3.99292 4.13241 4.33424 4.60763 4.87174 4.91015 4.99796 5.06384 5.13695 5.16717 5.32509 5.39893 5.41573 5.49991 5.65407 5.75348 5.85053 5.95471 6.21296 6.22576 6.69224 6.98097 7.13761 7.55203 7.69064 8.02139 8.40578 8.75859 9.10937 9.30709 9.85992 10.65338 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029616 B = 0.003611 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.208691 B = 7751.167970 C = 8369.088457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.119 4.119 3 C 0.230 3.770 4 N -0.439 5.439 5 C -0.313 4.313 6 H 0.106 0.894 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.922 3.078 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.453 3.547 14 O -0.561 6.561 15 C 0.054 3.946 16 O -0.354 6.354 17 C 0.157 3.843 18 C 0.198 3.802 19 N -0.462 5.462 20 C -0.045 4.045 21 C -0.047 4.047 22 C -0.067 4.067 23 O -0.194 6.194 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -12.504 -10.961 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.121 4.121 3 C 0.106 3.894 4 N -0.159 5.159 5 C -0.440 4.440 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.749 3.251 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.240 3.760 14 O -0.443 6.443 15 C -0.026 4.026 16 O -0.271 6.271 17 C 0.079 3.921 18 C -0.009 4.009 19 N -0.192 5.192 20 C -0.184 4.184 21 C -0.100 4.100 22 C -0.124 4.124 23 O -0.081 6.081 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.680 -12.501 -10.155 16.193 hybrid contribution 0.411 0.646 0.236 0.802 sum 2.091 -11.854 -9.919 15.597 Atomic orbital electron populations 1.24307 0.95400 1.04091 1.03564 1.23182 0.94373 0.97288 0.97260 1.18306 0.84330 0.99514 0.87221 1.43650 1.56497 1.03294 1.12505 1.19718 1.30083 0.95998 0.98238 0.87653 1.25292 0.95151 0.98359 0.98484 1.70098 1.19680 1.17524 1.42725 0.85932 0.79727 0.79619 0.79854 1.19156 1.20577 1.20876 1.19610 0.85183 0.82488 0.88711 1.90568 1.49608 1.65462 1.38628 1.22376 1.01091 0.80530 0.98586 1.88090 1.87640 1.17182 1.34221 1.20480 1.01674 0.80212 0.89748 1.25679 0.79155 0.96385 0.99636 1.70430 1.32829 1.00904 1.15085 1.23107 0.92116 0.97111 1.06036 1.23523 0.98612 0.84183 1.03714 1.20271 0.95819 0.92530 1.03768 1.84391 1.38058 1.20990 1.64675 0.78295 0.86916 0.92061 0.92147 0.91321 0.90804 0.90275 0.88724 0.79870 0.89864 0.90190 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.13 19.25 29.55 0.57 -4.56 16 2 C -0.12 -2.59 10.88 -37.12 -0.40 -3.00 16 3 C 0.23 4.90 4.91 -6.83 -0.03 4.86 16 4 N -0.44 -11.05 2.60 -117.93 -0.31 -11.35 16 5 C -0.31 -8.62 9.33 -14.93 -0.14 -8.76 16 6 H 0.11 3.08 7.39 -52.48 -0.39 2.69 16 7 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 8 N -0.86 -22.32 9.48 55.50 0.53 -21.80 16 9 Si 0.92 20.34 29.60 -169.99 -5.03 15.31 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.45 11.35 7.64 -10.99 -0.08 11.26 16 14 O -0.56 -16.54 16.15 -14.36 -0.23 -16.78 16 15 C 0.05 1.02 5.02 36.00 0.18 1.20 16 16 O -0.35 -7.00 9.86 -55.14 -0.54 -7.54 16 17 C 0.16 2.26 6.56 36.01 0.24 2.50 16 18 C 0.20 3.17 7.97 -12.95 -0.10 3.06 16 19 N -0.46 -7.62 11.29 -11.10 -0.13 -7.74 16 20 C -0.04 -0.58 11.80 -17.77 -0.21 -0.79 16 21 C -0.05 -0.57 7.39 -35.69 -0.26 -0.83 16 22 C -0.07 -0.47 10.43 36.00 0.38 -0.10 16 23 O -0.19 -2.92 10.78 5.35 0.06 -2.87 16 24 H 0.20 3.26 7.80 -54.10 -0.42 2.84 16 25 H 0.11 2.53 6.44 -51.93 -0.33 2.19 16 26 H 0.06 1.04 6.69 -51.93 -0.35 0.69 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.07 1.05 7.41 -51.93 -0.39 0.67 16 29 H 0.07 1.29 7.50 -51.93 -0.39 0.90 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -35.71 317.43 -4.77 -40.48 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.94 Total: 1.94 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 0.04 Total: 5.57 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.09 Total: -40.89 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.72 Total: -27.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.71 -4.77 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491179156.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.767 kcal (2) G-P(sol) polarization free energy of solvation -35.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds