Wall clock time and date at job start Tue Mar 31 2020 01:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47226 * 303.21337 * 3 2 1 5 5 C 1.37100 * 120.00074 * 264.13909 * 4 3 2 6 6 H 1.08003 * 119.99870 * 197.43010 * 5 4 3 7 7 C 1.38947 * 120.00065 * 17.43028 * 5 4 3 8 8 N 1.31416 * 119.99799 * 21.53770 * 7 5 4 9 9 Si 1.86798 * 120.00229 * 201.53423 * 7 5 4 10 10 H 1.48502 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47436 * 120.00122 * 9 7 5 12 12 H 1.48505 * 109.46988 * 240.00100 * 9 7 5 13 13 C 1.34781 * 120.00073 * 84.14139 * 4 3 2 14 14 O 1.21296 * 119.99909 * 180.02562 * 13 4 3 15 15 C 1.50695 * 119.99916 * 359.97438 * 13 4 3 16 16 O 1.42897 * 109.47243 * 180.02562 * 15 13 4 17 17 C 1.42895 * 114.00266 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47228 * 180.02562 * 17 16 15 19 19 N 1.30258 * 125.62130 * 90.02499 * 18 17 16 20 20 C 1.34473 * 108.70402 * 179.97438 * 19 18 17 21 21 C 1.34332 * 107.66876 * 0.26435 * 20 19 18 22 22 C 1.50697 * 126.44495 * 179.72938 * 21 20 19 23 23 O 1.33965 * 125.61910 * 269.97743 * 18 17 16 24 24 H 4.40636 * 5.51446 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47073 * 183.21351 * 3 2 1 26 26 H 1.09003 * 109.47394 * 63.21329 * 3 2 1 27 27 H 0.96998 * 119.99573 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47134 * 60.00148 * 15 13 4 29 29 H 1.08995 * 109.47077 * 300.00240 * 15 13 4 30 30 H 1.09002 * 109.47127 * 60.00043 * 17 16 15 31 31 H 1.09005 * 109.47088 * 300.00323 * 17 16 15 32 32 H 1.07994 * 126.16515 * 180.02562 * 20 19 18 33 33 H 1.09006 * 109.46743 * 90.00448 * 22 21 20 34 34 H 1.09000 * 109.47229 * 209.99567 * 22 21 20 35 35 H 1.08992 * 109.47223 * 330.00590 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7557 1.1556 5 6 3.4772 -0.0993 2.3094 6 1 4.0899 -0.5923 3.0497 7 6 3.0361 1.2003 2.5265 8 7 1.9844 1.6536 1.8819 9 14 3.9380 2.3033 3.7347 10 1 5.0801 1.5605 4.3255 11 1 4.4430 3.5060 3.0251 12 1 3.0074 2.7198 4.8144 13 6 3.2476 -2.0969 1.0843 14 8 3.6518 -2.7231 2.0413 15 6 2.8706 -2.8184 -0.1838 16 8 3.0758 -4.2222 -0.0121 17 6 2.7472 -5.0027 -1.1630 18 6 2.9999 -6.4594 -0.8710 19 7 2.1337 -7.2944 -0.3719 20 6 2.7163 -8.5005 -0.2533 21 6 3.9811 -8.3872 -0.6914 22 6 5.0134 -9.4840 -0.7399 23 8 4.1521 -7.1091 -1.0828 24 1 -1.0498 0.0000 0.0003 25 1 3.0089 1.0269 0.0576 26 1 3.0096 -0.4623 -0.9174 27 1 1.6768 2.5609 2.0332 28 1 3.4903 -2.4581 -1.0048 29 1 1.8213 -2.6301 -0.4108 30 1 3.3650 -4.6878 -2.0041 31 1 1.6954 -4.8593 -1.4111 32 1 2.2524 -9.3976 0.1293 33 1 4.9556 -9.9951 -1.7010 34 1 6.0072 -9.0534 -0.6167 35 1 4.8242 -10.1968 0.0626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491179156.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:32 Heat of formation + Delta-G solvation = -3.935600 kcal Electronic energy + Delta-G solvation = -20718.725216 eV Core-core repulsion = 17299.677208 eV Total energy + Delta-G solvation = -3419.048008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.40001 -40.68209 -38.76866 -37.02293 -35.84732 -34.08763 -33.68118 -33.04236 -30.71194 -28.94840 -27.98275 -26.32470 -25.78322 -23.38350 -22.18123 -21.19610 -19.72313 -18.75149 -18.38093 -18.11191 -17.72795 -17.19183 -17.00882 -16.62993 -15.94865 -15.74715 -15.57088 -15.24337 -14.54930 -14.25084 -14.14784 -13.94584 -13.85959 -13.52261 -13.27986 -13.16515 -12.94220 -12.76626 -12.47987 -12.45663 -12.13646 -11.64552 -11.22550 -11.08956 -10.88400 -10.63878 -10.34162 -9.86028 -9.75547 -8.33975 -5.94853 0.23509 1.34280 1.38762 1.44384 1.56979 1.63610 1.83166 2.07922 2.33273 2.38291 2.58391 3.02092 3.05231 3.51788 3.76727 3.87190 3.93175 4.01658 4.10059 4.16976 4.21225 4.34786 4.49002 4.61485 4.67849 4.68864 4.98193 4.99973 5.13569 5.26132 5.43715 5.46793 5.80187 6.09295 6.44948 6.63628 7.12645 7.15315 7.36615 7.93964 8.64551 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029616 B = 0.003611 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.208691 B = 7751.167970 C = 8369.088457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.159 4.159 3 C 0.229 3.771 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.071 0.929 7 C 0.007 3.993 8 N -0.868 5.868 9 Si 0.984 3.016 10 H -0.277 1.277 11 H -0.261 1.261 12 H -0.281 1.281 13 C 0.434 3.566 14 O -0.624 6.624 15 C 0.070 3.930 16 O -0.394 6.394 17 C 0.154 3.846 18 C 0.169 3.831 19 N -0.492 5.492 20 C -0.067 4.067 21 C -0.041 4.041 22 C -0.066 4.066 23 O -0.209 6.209 24 H 0.232 0.768 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.274 0.726 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.213 0.787 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -12.665 -12.566 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.160 4.160 3 C 0.107 3.893 4 N -0.165 5.165 5 C -0.482 4.482 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.504 5.504 9 Si 0.808 3.192 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.207 1.207 13 C 0.223 3.777 14 O -0.510 6.510 15 C -0.009 4.009 16 O -0.313 6.313 17 C 0.077 3.923 18 C -0.037 4.037 19 N -0.224 5.224 20 C -0.206 4.206 21 C -0.094 4.094 22 C -0.122 4.122 23 O -0.096 6.096 24 H 0.249 0.751 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.230 0.770 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.404 -12.635 -11.816 17.356 hybrid contribution 0.442 0.619 0.739 1.060 sum 1.846 -12.016 -11.077 16.447 Atomic orbital electron populations 1.25162 0.96376 1.02450 1.01888 1.23438 0.94994 0.98812 0.98786 1.18452 0.84618 0.98715 0.87489 1.43851 1.55912 1.03888 1.12833 1.19577 1.31804 0.97354 0.99492 0.91060 1.25945 0.95358 0.98488 0.99891 1.70176 1.19553 1.17850 1.42848 0.85030 0.78187 0.78058 0.77902 1.20180 1.18524 1.20664 1.20710 0.84074 0.82539 0.90337 1.90512 1.52347 1.66769 1.41397 1.22192 1.02619 0.80178 0.95913 1.88020 1.88246 1.17620 1.37415 1.20812 1.03560 0.78984 0.88912 1.25980 0.79576 0.97123 1.01051 1.70386 1.34046 1.02460 1.15509 1.23678 0.92810 0.97196 1.06873 1.24523 0.99481 0.83972 1.01393 1.20563 0.94324 0.91286 1.06049 1.84391 1.37969 1.22266 1.64941 0.75120 0.88474 0.87511 0.91616 0.87051 0.89125 0.86702 0.86922 0.76985 0.87423 0.89929 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.14 19.25 74.32 1.43 -7.71 16 2 C -0.16 -6.66 10.88 31.12 0.34 -6.33 16 3 C 0.23 9.57 4.91 84.57 0.42 9.99 16 4 N -0.45 -22.80 2.60 -645.41 -1.68 -24.48 16 5 C -0.36 -20.22 9.33 84.04 0.78 -19.44 16 6 H 0.07 4.45 7.39 -2.91 -0.02 4.43 16 7 C 0.01 0.38 4.87 84.92 0.41 0.79 16 8 N -0.87 -44.41 9.48 21.66 0.21 -44.21 16 9 Si 0.98 41.93 29.60 68.60 2.03 43.96 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 C 0.43 22.24 7.64 87.65 0.67 22.91 16 14 O -0.62 -38.71 16.15 15.96 0.26 -38.46 16 15 C 0.07 2.57 5.02 71.23 0.36 2.93 16 16 O -0.39 -15.54 9.86 -129.94 -1.28 -16.82 16 17 C 0.15 4.27 6.56 71.24 0.47 4.74 16 18 C 0.17 5.36 7.97 88.34 0.70 6.06 16 19 N -0.49 -16.22 11.29 -303.84 -3.43 -19.66 16 20 C -0.07 -1.69 11.80 83.40 0.98 -0.71 16 21 C -0.04 -0.94 7.39 24.79 0.18 -0.76 16 22 C -0.07 -0.76 10.43 71.23 0.74 -0.02 16 23 O -0.21 -6.18 10.78 -3.78 -0.04 -6.22 16 24 H 0.23 6.82 7.80 -4.42 -0.03 6.78 16 25 H 0.10 4.32 6.44 -2.38 -0.02 4.30 16 26 H 0.11 3.37 6.69 -2.39 -0.02 3.35 16 27 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.11 3.08 7.41 -2.39 -0.02 3.06 16 29 H 0.09 3.01 7.50 -2.39 -0.02 2.99 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.21 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -81.92 317.43 4.66 -77.26 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.11 Total: 16.15 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 7.49 Total: 12.47 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -4.90 Total: -88.34 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.06 Total: -61.49 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -81.92 4.66 -77.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491179156.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.322 kcal (2) G-P(sol) polarization free energy of solvation -81.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds