Wall clock time and date at job start Tue Mar 31 2020 00:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48507 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47645 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46985 * 60.00676 * 3 2 1 7 7 C 1.38949 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99484 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00338 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99867 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47279 * 180.02562 * 12 10 9 14 14 N 1.46502 * 109.47041 * 180.02562 * 13 12 10 15 15 C 1.34776 * 119.99814 * 180.02562 * 14 13 12 16 16 O 1.21773 * 120.00237 * 359.97438 * 15 14 13 17 17 C 1.41557 * 119.99762 * 180.27633 * 15 14 13 18 18 C 1.35626 * 119.99616 * 186.06298 * 17 15 14 19 19 C 1.41600 * 120.00628 * 8.85373 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.80683 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99845 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47217 * 59.99722 * 12 10 9 27 27 H 1.09005 * 109.46752 * 300.00489 * 12 10 9 28 28 H 1.08999 * 109.47494 * 60.00061 * 13 12 10 29 29 H 1.09002 * 109.47125 * 299.99402 * 13 12 10 30 30 H 0.96997 * 120.00012 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.00189 * 6.05624 * 17 15 14 32 32 H 1.08012 * 119.99485 * 188.85202 * 18 17 15 33 33 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 34 34 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 35 35 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 6 2.2381 -6.0258 -0.0004 14 7 1.5056 -7.2945 -0.0015 15 6 2.1796 -8.4617 -0.0006 16 8 3.3973 -8.4617 0.0008 17 6 1.4718 -9.6876 -0.0077 18 6 2.1436 -10.8591 0.1173 19 6 3.5220 -10.8539 0.4416 20 6 4.4850 -11.6873 -0.0887 21 6 5.7001 -11.3273 0.5137 22 6 5.4364 -10.3189 1.3741 23 8 4.1270 -10.0366 1.3287 24 1 -0.4850 0.8401 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6176 -4.9205 -0.8913 27 1 0.6168 -4.9208 0.8886 28 1 2.8641 -5.9681 0.8901 29 1 2.8654 -5.9681 -0.8899 30 1 0.5357 -7.2946 -0.0022 31 1 0.3969 -9.6900 -0.1125 32 1 1.6272 -11.7962 -0.0305 33 1 4.3337 -12.4631 -0.8246 34 1 6.6651 -11.7753 0.3278 35 1 6.1637 -9.8210 1.9982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491400731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:46 Heat of formation + Delta-G solvation = -37.521555 kcal Electronic energy + Delta-G solvation = -20284.403165 eV Core-core repulsion = 16863.898761 eV Total energy + Delta-G solvation = -3420.504404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39526 -39.71920 -38.25539 -35.16475 -34.07050 -33.91757 -32.82645 -31.35790 -30.57118 -28.66957 -25.60293 -24.25456 -22.44434 -21.65824 -21.03323 -19.79729 -19.01035 -18.06705 -17.68480 -16.66868 -16.09228 -15.85643 -15.46481 -15.26849 -14.53436 -14.34623 -14.27482 -13.91158 -13.86190 -13.11632 -12.86108 -12.65494 -12.56060 -12.41074 -12.30131 -11.60344 -11.34680 -11.20546 -10.95408 -10.35899 -10.25281 -10.21479 -9.93830 -9.74272 -9.56477 -8.84328 -8.47094 -8.01986 -8.00679 -6.45466 -3.86356 0.47371 2.10698 2.65416 3.14532 3.17808 3.25506 3.32378 3.40953 3.46726 3.85414 4.16894 4.62371 4.80533 4.97159 5.00028 5.03496 5.18460 5.19996 5.30380 5.59963 5.62394 5.65723 5.81875 5.89185 5.92201 6.17786 6.31113 6.33516 6.39953 6.49806 6.66641 7.19770 7.52622 7.63277 8.02022 8.37113 8.55772 9.13701 9.49416 10.00231 10.72190 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040778 B = 0.002803 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.479730 B = 9986.710256 C =10550.573807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.443 3.557 11 O -0.593 6.593 12 C -0.143 4.143 13 C 0.141 3.859 14 N -0.726 5.726 15 C 0.532 3.468 16 O -0.524 6.524 17 C -0.201 4.201 18 C -0.001 4.001 19 C 0.007 3.993 20 C -0.183 4.183 21 C -0.229 4.229 22 C -0.013 4.013 23 O -0.132 6.132 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.397 0.603 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -22.122 0.932 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.196 5.196 10 C 0.228 3.772 11 O -0.478 6.478 12 C -0.184 4.184 13 C 0.017 3.983 14 N -0.377 5.377 15 C 0.321 3.679 16 O -0.403 6.403 17 C -0.222 4.222 18 C -0.020 4.020 19 C -0.044 4.044 20 C -0.203 4.203 21 C -0.248 4.248 22 C -0.084 4.084 23 O -0.025 6.025 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.231 0.769 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.843 -21.678 1.100 21.722 hybrid contribution -0.701 0.878 -0.197 1.140 sum 0.142 -20.800 0.903 20.820 Atomic orbital electron populations 1.69618 1.05967 1.28150 1.50475 1.25281 0.95649 0.99804 0.97180 0.85791 0.79768 0.81014 0.77737 1.19150 1.20698 1.20704 1.19792 0.93481 0.82227 1.47540 0.87781 1.41887 1.09243 1.04638 1.63817 1.19634 0.88170 0.84714 0.84689 1.90555 1.13883 1.87298 1.56113 1.21643 0.99054 0.94362 1.03307 1.21004 0.93728 0.79824 1.03710 1.46036 1.10122 1.06365 1.75215 1.17122 0.88045 0.84587 0.78104 1.90893 1.13350 1.87321 1.48732 1.22324 1.00969 0.92943 1.05938 1.20602 0.89245 0.98593 0.93604 1.19575 0.93773 0.93139 0.97877 1.22120 0.92405 1.02176 1.03569 1.21612 0.99465 1.01836 1.01882 1.24182 0.83242 0.98758 1.02209 1.84290 1.20278 1.48314 1.49594 0.91860 0.77349 0.89895 0.89892 0.90744 0.90796 0.76908 0.84483 0.82841 0.83535 0.83684 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C 0.44 10.40 7.78 -10.99 -0.09 10.32 16 11 O -0.59 -16.32 15.56 5.55 0.09 -16.23 16 12 C -0.14 -2.38 5.81 -27.88 -0.16 -2.54 16 13 C 0.14 2.39 4.96 -4.04 -0.02 2.37 16 14 N -0.73 -9.52 5.55 -63.24 -0.35 -9.87 16 15 C 0.53 7.64 7.36 -14.99 -0.11 7.53 16 16 O -0.52 -9.68 12.41 -19.71 -0.24 -9.92 16 17 C -0.20 -2.00 9.85 -39.25 -0.39 -2.39 16 18 C 0.00 -0.01 9.95 -39.23 -0.39 -0.40 16 19 C 0.01 0.09 5.32 -38.40 -0.20 -0.12 16 20 C -0.18 -2.08 10.90 -38.90 -0.42 -2.50 16 21 C -0.23 -2.58 10.87 -39.90 -0.43 -3.01 16 22 C -0.01 -0.16 12.06 29.64 0.36 0.19 16 23 O -0.13 -1.96 7.81 -20.18 -0.16 -2.11 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 29 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.40 3.75 8.43 -40.82 -0.34 3.40 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.20 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -35.70 315.15 -6.35 -42.06 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -3.98 Total: 11.76 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.10 Total: 1.40 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.32 Total: -47.70 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.32 Total: -28.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.70 -6.35 -42.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491400731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.534 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds