Wall clock time and date at job start Tue Mar 31 2020 00:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48507 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47645 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46985 * 60.00676 * 3 2 1 7 7 C 1.38949 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99590 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99484 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00338 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99867 * 180.02562 * 10 9 7 13 13 C 1.52995 * 109.47279 * 180.02562 * 12 10 9 14 14 N 1.46502 * 109.47041 * 180.02562 * 13 12 10 15 15 C 1.34776 * 119.99814 * 180.02562 * 14 13 12 16 16 O 1.21773 * 120.00237 * 359.97438 * 15 14 13 17 17 C 1.41557 * 119.99762 * 180.27633 * 15 14 13 18 18 C 1.35626 * 119.99616 * 186.06298 * 17 15 14 19 19 C 1.41600 * 120.00628 * 8.85373 * 18 17 15 20 20 C 1.37955 * 126.10479 * 219.80683 * 19 18 17 21 21 C 1.40316 * 106.52697 * 179.84863 * 20 19 18 22 22 C 1.35159 * 107.20837 * 0.40349 * 21 20 19 23 23 O 1.34026 * 109.03199 * 359.74473 * 22 21 20 24 24 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99845 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47217 * 59.99722 * 12 10 9 27 27 H 1.09005 * 109.46752 * 300.00489 * 12 10 9 28 28 H 1.08999 * 109.47494 * 60.00061 * 13 12 10 29 29 H 1.09002 * 109.47125 * 299.99402 * 13 12 10 30 30 H 0.96997 * 120.00012 * 359.97438 * 14 13 12 31 31 H 1.08002 * 120.00189 * 6.05624 * 17 15 14 32 32 H 1.08012 * 119.99485 * 188.85202 * 18 17 15 33 33 H 1.07994 * 126.73651 * 359.95911 * 20 19 18 34 34 H 1.08004 * 126.39835 * 180.15015 * 21 20 19 35 35 H 1.07997 * 125.48576 * 179.72054 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3465 0.0006 5 1 1.8894 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 6 2.2381 -6.0258 -0.0004 14 7 1.5056 -7.2945 -0.0015 15 6 2.1796 -8.4617 -0.0006 16 8 3.3973 -8.4617 0.0008 17 6 1.4718 -9.6876 -0.0077 18 6 2.1436 -10.8591 0.1173 19 6 3.5220 -10.8539 0.4416 20 6 4.4850 -11.6873 -0.0887 21 6 5.7001 -11.3273 0.5137 22 6 5.4364 -10.3189 1.3741 23 8 4.1270 -10.0366 1.3287 24 1 -0.4850 0.8401 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6176 -4.9205 -0.8913 27 1 0.6168 -4.9208 0.8886 28 1 2.8641 -5.9681 0.8901 29 1 2.8654 -5.9681 -0.8899 30 1 0.5357 -7.2946 -0.0022 31 1 0.3969 -9.6900 -0.1125 32 1 1.6272 -11.7962 -0.0305 33 1 4.3337 -12.4631 -0.8246 34 1 6.6651 -11.7753 0.3278 35 1 6.1637 -9.8210 1.9982 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491400731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:45 Heat of formation + Delta-G solvation = -63.781970 kcal Electronic energy + Delta-G solvation = -20285.541902 eV Core-core repulsion = 16863.898761 eV Total energy + Delta-G solvation = -3421.643141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.28745 -40.88364 -40.10873 -36.50506 -35.88293 -34.95154 -33.71624 -33.35856 -31.97656 -29.61549 -27.34600 -25.57371 -23.71590 -22.54033 -22.05921 -21.22296 -20.41297 -19.84753 -18.84375 -18.00315 -17.34135 -16.91930 -16.78447 -16.64196 -16.33510 -15.81414 -15.68238 -15.19570 -14.90253 -14.35819 -14.27398 -13.97608 -13.68596 -13.52573 -13.39124 -13.13245 -12.97254 -12.82618 -12.43010 -12.39687 -12.12716 -11.56248 -11.08962 -10.98483 -10.68031 -10.44504 -10.09257 -10.02527 -8.88006 -8.50455 -5.99384 -0.33413 1.21692 1.34670 1.40887 1.54855 1.78732 1.99545 2.17849 2.31595 2.37788 2.55546 3.16976 3.32261 3.79561 3.90366 4.09800 4.14468 4.17634 4.24338 4.34871 4.55017 4.67117 4.83158 4.88800 4.91853 4.99773 5.09021 5.18471 5.38528 5.40692 5.44929 5.70590 5.95742 6.32183 6.54527 6.65156 7.08315 7.34831 7.50568 8.06480 8.66919 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040778 B = 0.002803 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.479730 B = 9986.710256 C =10550.573807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.076 0.924 9 N -0.567 5.567 10 C 0.436 3.564 11 O -0.640 6.640 12 C -0.122 4.122 13 C 0.155 3.845 14 N -0.711 5.711 15 C 0.522 3.478 16 O -0.575 6.575 17 C -0.209 4.209 18 C 0.008 3.992 19 C -0.021 4.021 20 C -0.190 4.190 21 C -0.234 4.234 22 C -0.042 4.042 23 O -0.163 6.163 24 H 0.279 0.721 25 H 0.400 0.600 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.419 0.581 31 H 0.184 0.816 32 H 0.203 0.797 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -23.363 0.519 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.094 0.906 9 N -0.203 5.203 10 C 0.224 3.776 11 O -0.529 6.529 12 C -0.163 4.163 13 C 0.030 3.970 14 N -0.364 5.364 15 C 0.313 3.687 16 O -0.457 6.457 17 C -0.229 4.229 18 C -0.011 4.011 19 C -0.070 4.070 20 C -0.209 4.209 21 C -0.253 4.253 22 C -0.111 4.111 23 O -0.058 6.058 24 H 0.089 0.911 25 H 0.234 0.766 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.257 0.743 31 H 0.201 0.799 32 H 0.220 0.780 33 H 0.192 0.808 34 H 0.185 0.815 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.291 -22.935 0.686 22.982 hybrid contribution -0.007 1.199 -0.068 1.200 sum -1.298 -21.737 0.618 21.784 Atomic orbital electron populations 1.69661 1.06727 1.29394 1.49931 1.26027 0.96573 1.02354 0.96047 0.84890 0.77968 0.77111 0.78484 1.20031 1.19392 1.19415 1.19712 0.92706 0.84149 1.50193 0.90550 1.41927 1.09469 1.04596 1.64334 1.20783 0.87993 0.86400 0.82415 1.90529 1.16421 1.88281 1.57626 1.21513 0.98468 0.89775 1.06512 1.20543 0.93655 0.81996 1.00820 1.45775 1.11057 1.04680 1.74871 1.17968 0.87780 0.86040 0.76898 1.90882 1.15768 1.88051 1.50975 1.22469 1.02909 0.90563 1.06924 1.21263 0.87797 1.00504 0.91542 1.20387 0.95620 0.93045 0.97995 1.22560 0.92068 1.02527 1.03757 1.22007 1.00655 1.01358 1.01234 1.24729 0.83156 0.99778 1.03473 1.84256 1.21293 1.49494 1.50710 0.91130 0.76561 0.86434 0.86538 0.93909 0.93830 0.74282 0.79859 0.78040 0.80813 0.81487 0.76928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.81 13.05 21.66 0.28 -48.52 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -28.88 5.29 -306.98 -1.62 -30.50 16 10 C 0.44 20.81 7.78 87.66 0.68 21.49 16 11 O -0.64 -36.75 15.56 -3.06 -0.05 -36.80 16 12 C -0.12 -3.91 5.81 29.85 0.17 -3.74 16 13 C 0.16 5.31 4.96 86.38 0.43 5.74 16 14 N -0.71 -17.61 5.55 -472.19 -2.62 -20.23 16 15 C 0.52 14.54 7.36 85.06 0.63 15.17 16 16 O -0.57 -21.85 12.41 19.16 0.24 -21.62 16 17 C -0.21 -3.56 9.85 22.48 0.22 -3.33 16 18 C 0.01 0.13 9.95 22.49 0.22 0.36 16 19 C -0.02 -0.51 5.32 23.03 0.12 -0.38 16 20 C -0.19 -4.09 10.90 22.71 0.25 -3.84 16 21 C -0.23 -5.19 10.87 22.07 0.24 -4.95 16 22 C -0.04 -1.07 12.06 67.11 0.81 -0.26 16 23 O -0.16 -4.98 7.81 17.48 0.14 -4.85 16 24 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 26 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 28 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 29 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.42 6.53 8.43 -92.71 -0.78 5.75 16 31 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 32 H 0.20 1.13 8.06 -2.90 -0.02 1.11 16 33 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -82.27 315.15 3.07 -79.20 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.38 Total: 30.66 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.06 Total: 7.70 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.96 Total: -99.26 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: 0.33 Total: -63.27 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -82.27 3.07 -79.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491400731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.418 kcal (2) G-P(sol) polarization free energy of solvation -82.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds