Wall clock time and date at job start Tue Mar 31 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47223 * 33.17911 * 3 2 1 5 5 C 1.37092 * 119.99996 * 264.13627 * 4 3 2 6 6 H 1.08002 * 119.99893 * 197.43258 * 5 4 3 7 7 C 1.38946 * 119.99880 * 17.43815 * 5 4 3 8 8 N 1.31413 * 120.00088 * 21.51988 * 7 5 4 9 9 Si 1.86808 * 119.99958 * 201.52071 * 7 5 4 10 10 H 1.48501 * 109.47106 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46833 * 299.99720 * 9 7 5 13 13 C 1.34777 * 119.99812 * 84.13614 * 4 3 2 14 14 O 1.21293 * 120.00158 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00340 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47408 * 180.02562 * 15 13 4 17 17 C 1.42895 * 113.99991 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46865 * 179.97438 * 17 16 15 19 19 C 1.35458 * 126.77740 * 89.99933 * 18 17 16 20 20 C 1.41374 * 103.98390 * 179.97438 * 19 18 17 21 21 C 1.50703 * 126.80044 * 180.02562 * 20 19 18 22 22 N 1.30175 * 106.40092 * 359.97438 * 20 19 18 23 23 O 1.20923 * 111.59873 * 359.72431 * 22 20 19 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47587 * 273.17867 * 3 2 1 26 26 H 1.08999 * 109.46980 * 153.17761 * 3 2 1 27 27 H 0.97008 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47098 * 59.99378 * 15 13 4 29 29 H 1.09001 * 109.46490 * 300.00223 * 15 13 4 30 30 H 1.09001 * 109.47115 * 299.99056 * 17 16 15 31 31 H 1.08993 * 109.47621 * 59.99397 * 17 16 15 32 32 H 1.08004 * 128.00742 * 359.97438 * 19 18 17 33 33 H 1.09003 * 109.47097 * 90.00421 * 21 20 19 34 34 H 1.08997 * 109.47434 * 209.99595 * 21 20 19 35 35 H 1.08999 * 109.47409 * 330.00303 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1552 -0.7559 5 6 3.4782 -2.3084 -0.0990 6 1 4.0910 -3.0487 -0.5918 7 6 3.0377 -2.5249 1.2009 8 7 1.9860 -1.8804 1.6543 9 14 3.9404 -3.7323 2.3041 10 1 5.3489 -3.2924 2.4712 11 1 3.2761 -3.7822 3.6313 12 1 3.9134 -5.0825 1.6866 13 6 3.2470 -1.0847 -2.0971 14 8 3.6513 -2.0418 -2.7231 15 6 2.8701 0.1832 -2.8193 16 8 3.0744 0.0107 -4.2230 17 6 2.7457 1.1614 -5.0039 18 6 2.9987 0.8688 -6.4605 19 6 2.1171 0.3500 -7.3485 20 6 2.8494 0.2800 -8.5558 21 6 2.3519 -0.2256 -9.8854 22 7 4.0383 0.7398 -8.2917 23 8 4.1383 1.0770 -7.1347 24 1 -1.0499 -0.0004 0.0000 25 1 3.0094 -0.0562 1.0261 26 1 3.0088 0.9179 -0.4637 27 1 1.6783 -2.0318 2.5617 28 1 3.4902 1.0043 -2.4596 29 1 1.8209 0.4107 -2.6304 30 1 1.6942 1.4097 -4.8603 31 1 3.3639 2.0023 -4.6899 32 1 1.0921 0.0576 -7.1745 33 1 1.9204 0.6010 -10.4500 34 1 3.1833 -0.6533 -10.4457 35 1 1.5922 -0.9900 -9.7223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491463127.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:19 Heat of formation + Delta-G solvation = 57.713752 kcal Electronic energy + Delta-G solvation = -20734.683667 eV Core-core repulsion = 17318.308976 eV Total energy + Delta-G solvation = -3416.374691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.93295 -38.93757 -37.36410 -35.12820 -34.83312 -32.63811 -32.16040 -31.28668 -28.78961 -28.30663 -26.57960 -25.99539 -24.09481 -23.10783 -20.32094 -19.39483 -17.97924 -17.72062 -17.42891 -16.71686 -16.43424 -15.87798 -15.71710 -15.04430 -14.46968 -14.26448 -14.00034 -13.61370 -13.51828 -13.17400 -12.99213 -12.81537 -12.39404 -12.21772 -11.85594 -11.61066 -11.48883 -11.17513 -11.00279 -10.56880 -10.36352 -10.06516 -9.61832 -9.55939 -9.43962 -9.29204 -8.96716 -8.42569 -7.92270 -6.37763 -3.90312 1.31696 2.14267 2.93712 3.15625 3.23564 3.26517 3.55017 3.77820 3.93923 3.96755 4.11212 4.19236 4.41162 4.90564 4.95258 4.98841 5.12122 5.15081 5.24597 5.29102 5.36665 5.42686 5.49554 5.62604 5.64729 5.69633 5.81856 6.01417 6.20153 6.67029 6.94547 7.13542 7.53040 7.99886 8.21252 8.38439 8.71999 9.08829 9.28674 9.83929 10.63197 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.003576 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.412974 B = 7827.801985 C = 8305.614916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.118 4.118 3 C 0.229 3.771 4 N -0.438 5.438 5 C -0.315 4.315 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.452 3.548 14 O -0.561 6.561 15 C 0.053 3.947 16 O -0.354 6.354 17 C 0.138 3.862 18 C -0.019 4.019 19 C -0.211 4.211 20 C 0.010 3.990 21 C -0.074 4.074 22 N -0.364 5.364 23 O 0.106 5.894 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.174 0.826 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 9.757 -10.537 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.239 3.761 14 O -0.443 6.443 15 C -0.027 4.027 16 O -0.272 6.272 17 C 0.060 3.940 18 C -0.083 4.083 19 C -0.232 4.232 20 C -0.148 4.148 21 C -0.131 4.131 22 N -0.068 5.068 23 O 0.039 5.961 24 H 0.217 0.783 25 H 0.131 0.869 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.922 9.262 -11.477 14.873 hybrid contribution -0.995 -0.564 1.214 1.668 sum -2.917 8.698 -10.263 13.766 Atomic orbital electron populations 1.24298 0.95391 1.03663 1.04206 1.23189 0.94369 0.97173 0.97188 1.18310 0.84308 0.87248 0.99558 1.43629 1.56444 1.12476 1.03319 1.19633 1.30246 0.98315 0.96041 0.87714 1.25284 0.95111 0.98464 0.98322 1.70076 1.19622 1.42696 1.17686 0.86043 0.79612 0.80659 0.78716 1.19805 1.21028 1.19808 1.19625 0.85230 0.88749 0.82477 1.90568 1.49640 1.38630 1.65488 1.22367 1.00911 0.98554 0.80836 1.88104 1.87751 1.34318 1.17009 1.20639 1.00928 0.89973 0.82450 1.24038 0.86039 1.02065 0.96148 1.22478 1.02957 1.06024 0.91785 1.23606 0.90341 1.02204 0.98650 1.20152 1.01659 1.01289 0.90023 1.73836 1.20312 1.16470 0.96208 1.84813 1.33939 1.61760 1.15617 0.78312 0.86912 0.92034 0.92020 0.91338 0.91007 0.89660 0.90737 0.80893 0.90268 0.90575 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.01 19.25 29.55 0.57 -4.44 16 2 C -0.12 -2.49 10.88 -37.13 -0.40 -2.89 16 3 C 0.23 4.79 4.91 -6.83 -0.03 4.75 16 4 N -0.44 -10.82 2.60 -117.93 -0.31 -11.13 16 5 C -0.32 -8.56 9.33 -14.94 -0.14 -8.70 16 6 H 0.11 3.02 7.39 -52.49 -0.39 2.63 16 7 C 0.03 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.03 9.48 55.50 0.53 -21.51 16 9 Si 0.92 20.15 29.60 -169.99 -5.03 15.12 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.45 11.03 7.64 -10.98 -0.08 10.94 16 14 O -0.56 -16.18 16.15 -14.36 -0.23 -16.42 16 15 C 0.05 0.96 5.02 36.01 0.18 1.14 16 16 O -0.35 -6.51 9.86 -55.14 -0.54 -7.06 16 17 C 0.14 1.75 6.50 36.01 0.23 1.99 16 18 C -0.02 -0.27 7.12 -35.30 -0.25 -0.52 16 19 C -0.21 -2.64 11.06 -39.38 -0.44 -3.08 16 20 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 21 C -0.07 -0.64 10.47 36.01 0.38 -0.26 16 22 N -0.36 -5.52 12.07 33.42 0.40 -5.12 16 23 O 0.11 1.63 11.20 17.18 0.19 1.82 16 24 H 0.20 3.13 7.80 -54.10 -0.42 2.70 16 25 H 0.11 2.49 6.44 -51.93 -0.33 2.16 16 26 H 0.06 1.02 6.69 -51.93 -0.35 0.68 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.07 1.02 7.42 -51.93 -0.39 0.63 16 29 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -33.88 316.95 -4.83 -38.71 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.94 Total: 1.59 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.67 Total: -0.78 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.62 Total: -37.75 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.58 Total: -21.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.88 -4.83 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491463127.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.420 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds