Wall clock time and date at job start Tue Mar 31 2020 01:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47223 * 33.17911 * 3 2 1 5 5 C 1.37092 * 119.99996 * 264.13627 * 4 3 2 6 6 H 1.08002 * 119.99893 * 197.43258 * 5 4 3 7 7 C 1.38946 * 119.99880 * 17.43815 * 5 4 3 8 8 N 1.31413 * 120.00088 * 21.51988 * 7 5 4 9 9 Si 1.86808 * 119.99958 * 201.52071 * 7 5 4 10 10 H 1.48501 * 109.47106 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46833 * 299.99720 * 9 7 5 13 13 C 1.34777 * 119.99812 * 84.13614 * 4 3 2 14 14 O 1.21293 * 120.00158 * 180.02562 * 13 4 3 15 15 C 1.50705 * 120.00340 * 0.02562 * 13 4 3 16 16 O 1.42896 * 109.47408 * 180.02562 * 15 13 4 17 17 C 1.42895 * 113.99991 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46865 * 179.97438 * 17 16 15 19 19 C 1.35458 * 126.77740 * 89.99933 * 18 17 16 20 20 C 1.41374 * 103.98390 * 179.97438 * 19 18 17 21 21 C 1.50703 * 126.80044 * 180.02562 * 20 19 18 22 22 N 1.30175 * 106.40092 * 359.97438 * 20 19 18 23 23 O 1.20923 * 111.59873 * 359.72431 * 22 20 19 24 24 H 4.40640 * 5.51438 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47587 * 273.17867 * 3 2 1 26 26 H 1.08999 * 109.46980 * 153.17761 * 3 2 1 27 27 H 0.97008 * 119.99780 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47098 * 59.99378 * 15 13 4 29 29 H 1.09001 * 109.46490 * 300.00223 * 15 13 4 30 30 H 1.09001 * 109.47115 * 299.99056 * 17 16 15 31 31 H 1.08993 * 109.47621 * 59.99397 * 17 16 15 32 32 H 1.08004 * 128.00742 * 359.97438 * 19 18 17 33 33 H 1.09003 * 109.47097 * 90.00421 * 21 20 19 34 34 H 1.08997 * 109.47434 * 209.99595 * 21 20 19 35 35 H 1.08999 * 109.47409 * 330.00303 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1552 -0.7559 5 6 3.4782 -2.3084 -0.0990 6 1 4.0910 -3.0487 -0.5918 7 6 3.0377 -2.5249 1.2009 8 7 1.9860 -1.8804 1.6543 9 14 3.9404 -3.7323 2.3041 10 1 5.3489 -3.2924 2.4712 11 1 3.2761 -3.7822 3.6313 12 1 3.9134 -5.0825 1.6866 13 6 3.2470 -1.0847 -2.0971 14 8 3.6513 -2.0418 -2.7231 15 6 2.8701 0.1832 -2.8193 16 8 3.0744 0.0107 -4.2230 17 6 2.7457 1.1614 -5.0039 18 6 2.9987 0.8688 -6.4605 19 6 2.1171 0.3500 -7.3485 20 6 2.8494 0.2800 -8.5558 21 6 2.3519 -0.2256 -9.8854 22 7 4.0383 0.7398 -8.2917 23 8 4.1383 1.0770 -7.1347 24 1 -1.0499 -0.0004 0.0000 25 1 3.0094 -0.0562 1.0261 26 1 3.0088 0.9179 -0.4637 27 1 1.6783 -2.0318 2.5617 28 1 3.4902 1.0043 -2.4596 29 1 1.8209 0.4107 -2.6304 30 1 1.6942 1.4097 -4.8603 31 1 3.3639 2.0023 -4.6899 32 1 1.0921 0.0576 -7.1745 33 1 1.9204 0.6010 -10.4500 34 1 3.1833 -0.6533 -10.4457 35 1 1.5922 -0.9900 -9.7223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491463127.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:18 Heat of formation + Delta-G solvation = 35.999307 kcal Electronic energy + Delta-G solvation = -20735.625276 eV Core-core repulsion = 17318.308976 eV Total energy + Delta-G solvation = -3417.316300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.94392 -40.64822 -38.74632 -37.00209 -35.77785 -34.08821 -33.59818 -33.02151 -29.77843 -29.58394 -28.16106 -27.29046 -25.85896 -24.09972 -21.37942 -21.04260 -19.70115 -18.84541 -18.61401 -18.32861 -17.88930 -17.16940 -17.11907 -16.64271 -15.95643 -15.74179 -15.61202 -14.81627 -14.48014 -14.19388 -14.14738 -14.03348 -13.92542 -13.51960 -13.45334 -13.21526 -12.82914 -12.66889 -12.48729 -12.17288 -12.13091 -11.19698 -11.06917 -10.99894 -10.79037 -10.65045 -10.56818 -10.27519 -9.84490 -8.32831 -5.93418 0.27673 1.18428 1.38385 1.44145 1.52991 1.83691 1.96053 2.12929 2.34384 2.40064 2.70234 3.03967 3.24617 3.34554 3.59716 3.88971 3.96950 4.00245 4.16298 4.22293 4.28620 4.39312 4.43902 4.58936 4.68906 4.71335 4.87973 4.88032 5.00096 5.22853 5.45739 5.47615 5.87015 6.12917 6.46949 7.14497 7.17342 7.19944 7.39041 7.96583 8.65196 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.003576 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.412974 B = 7827.801985 C = 8305.614916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.158 4.158 3 C 0.229 3.771 4 N -0.446 5.446 5 C -0.356 4.356 6 H 0.071 0.929 7 C 0.009 3.991 8 N -0.867 5.867 9 Si 0.982 3.018 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.434 3.566 14 O -0.624 6.624 15 C 0.070 3.930 16 O -0.393 6.393 17 C 0.135 3.865 18 C -0.037 4.037 19 C -0.211 4.211 20 C 0.008 3.992 21 C -0.074 4.074 22 N -0.395 5.395 23 O 0.081 5.919 24 H 0.233 0.767 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.274 0.726 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.199 0.801 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 11.128 -10.269 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.160 4.160 3 C 0.107 3.893 4 N -0.166 5.166 5 C -0.484 4.484 6 H 0.089 0.911 7 C -0.195 4.195 8 N -0.504 5.504 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.223 3.777 14 O -0.510 6.510 15 C -0.009 4.009 16 O -0.313 6.313 17 C 0.058 3.942 18 C -0.100 4.100 19 C -0.232 4.232 20 C -0.150 4.150 21 C -0.131 4.131 22 N -0.104 5.104 23 O 0.017 5.983 24 H 0.250 0.750 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.216 0.784 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.662 10.693 -11.164 15.887 hybrid contribution -0.548 -0.992 1.095 1.576 sum -4.210 9.700 -10.069 14.602 Atomic orbital electron populations 1.25156 0.96342 1.01858 1.02420 1.23405 0.94931 0.98813 0.98838 1.18433 0.84733 0.87485 0.98654 1.43834 1.55998 1.12749 1.03998 1.19503 1.31902 0.99586 0.97384 0.91066 1.25902 0.95347 0.99831 0.98461 1.70155 1.19499 1.42818 1.17898 0.85180 0.78896 0.78075 0.77252 1.19166 1.19516 1.20807 1.20773 0.83972 0.90451 0.82467 1.90515 1.52286 1.41429 1.66777 1.22162 1.02594 0.95524 0.80626 1.88036 1.88481 1.37501 1.17239 1.21010 1.03479 0.88752 0.80955 1.24462 0.85982 1.02585 0.96974 1.22924 1.03967 1.05021 0.91327 1.24330 0.89641 1.00731 1.00325 1.20347 1.02115 1.02478 0.88197 1.73828 1.21843 1.18195 0.96520 1.84767 1.34910 1.62637 1.15942 0.75038 0.88672 0.87591 0.91627 0.87596 0.88844 0.86248 0.88202 0.78351 0.88156 0.90624 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.65 19.25 74.32 1.43 -7.22 16 2 C -0.16 -6.39 10.88 31.12 0.34 -6.05 16 3 C 0.23 9.32 4.91 84.57 0.42 9.73 16 4 N -0.45 -22.30 2.60 -645.41 -1.68 -23.98 16 5 C -0.36 -19.98 9.33 84.04 0.78 -19.19 16 6 H 0.07 4.37 7.39 -2.91 -0.02 4.35 16 7 C 0.01 0.45 4.87 84.93 0.41 0.86 16 8 N -0.87 -43.67 9.48 21.66 0.21 -43.47 16 9 Si 0.98 41.46 29.60 68.60 2.03 43.49 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 C 0.43 21.46 7.64 87.66 0.67 22.13 16 14 O -0.62 -37.57 16.15 15.97 0.26 -37.32 16 15 C 0.07 2.41 5.02 71.24 0.36 2.76 16 16 O -0.39 -14.06 9.86 -129.94 -1.28 -15.34 16 17 C 0.13 3.11 6.50 71.24 0.46 3.57 16 18 C -0.04 -0.98 7.12 25.04 0.18 -0.80 16 19 C -0.21 -4.95 11.06 22.40 0.25 -4.71 16 20 C 0.01 0.20 7.33 43.58 0.32 0.52 16 21 C -0.07 -1.15 10.47 71.24 0.75 -0.40 16 22 N -0.40 -12.03 12.07 -49.57 -0.60 -12.62 16 23 O 0.08 2.50 11.20 71.66 0.80 3.30 16 24 H 0.23 6.37 7.80 -4.42 -0.03 6.33 16 25 H 0.10 4.16 6.44 -2.39 -0.02 4.15 16 26 H 0.11 3.24 6.69 -2.39 -0.02 3.23 16 27 H 0.27 13.05 8.31 -92.70 -0.77 12.28 16 28 H 0.11 2.80 7.42 -2.39 -0.02 2.78 16 29 H 0.09 2.80 7.51 -2.39 -0.02 2.78 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.20 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.42 316.95 7.21 -70.22 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.11 Total: 14.50 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 6.36 Total: 1.21 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.07 Total: -80.07 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.22 Total: -49.35 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -77.42 7.21 -70.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491463127.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.215 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds