Wall clock time and date at job start Tue Mar 31 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35155 * 125.48551 * 2 1 4 4 C 1.40317 * 107.20445 * 179.77727 * 3 2 1 5 5 C 1.37942 * 106.52907 * 0.35703 * 4 3 2 6 6 C 1.41609 * 126.10225 * 179.90389 * 5 4 3 7 7 C 1.35628 * 120.00190 * 220.03564 * 6 5 4 8 8 C 1.41551 * 119.99754 * 8.65253 * 7 6 5 9 9 O 1.21777 * 120.00146 * 6.42428 * 8 7 6 10 10 N 1.34784 * 119.99574 * 186.41594 * 8 7 6 11 11 C 1.46502 * 119.99604 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.46836 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00381 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99845 * 180.02562 * 12 11 10 15 15 C 1.37104 * 120.00224 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99642 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00080 * 179.97438 * 15 14 12 18 18 N 1.31416 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99744 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47277 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46718 * 120.00493 * 19 17 15 22 22 H 1.48505 * 109.47096 * 239.99903 * 19 17 15 23 23 O 1.34021 * 125.48132 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47218 * 299.97432 * 1 2 3 26 26 H 1.09002 * 109.47131 * 59.97139 * 1 2 3 27 27 H 1.08005 * 126.39557 * 0.02864 * 3 2 1 28 28 H 1.07999 * 126.73348 * 180.22900 * 4 3 2 29 29 H 1.08001 * 120.00026 * 40.03484 * 6 5 4 30 30 H 1.08004 * 119.99976 * 188.93784 * 7 6 5 31 31 H 0.96994 * 120.00274 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.46993 * 300.00264 * 11 10 8 33 33 H 1.09000 * 109.47384 * 60.00115 * 11 10 8 34 34 H 0.96999 * 120.00148 * 359.97438 * 14 12 11 35 35 H 0.97007 * 119.99679 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6239 0.6604 0.0052 5 6 3.5817 -0.7184 -0.0001 6 6 4.6998 -1.5874 0.0006 7 6 4.6861 -2.7108 -0.7592 8 6 3.6401 -2.9236 -1.6889 9 8 2.8180 -2.0483 -1.8915 10 7 3.5542 -4.0950 -2.3500 11 6 2.4719 -4.3151 -3.3126 12 6 2.6019 -5.6934 -3.9079 13 8 3.5094 -6.4202 -3.5625 14 7 1.7101 -6.1181 -4.8249 15 6 1.8280 -7.3723 -5.3662 16 1 2.6356 -8.0196 -5.0581 17 6 0.9083 -7.8103 -6.3112 18 7 -0.0741 -7.0223 -6.6865 19 14 1.0694 -9.5188 -7.0492 20 1 2.2513 -10.2013 -6.4641 21 1 -0.1544 -10.3047 -6.7493 22 1 1.2387 -9.4086 -8.5204 23 8 2.2848 -1.0913 -0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8897 27 1 1.9556 2.1270 0.0004 28 1 4.5087 1.2796 0.0101 29 1 5.5636 -1.3555 0.6061 30 1 5.4707 -3.4451 -0.6516 31 1 4.2088 -4.7923 -2.1884 32 1 1.5111 -4.2279 -2.8052 33 1 2.5333 -3.5694 -4.1052 34 1 0.9846 -5.5368 -5.1015 35 1 -0.7159 -7.3280 -7.3466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493224462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:58 Heat of formation + Delta-G solvation = -37.603241 kcal Electronic energy + Delta-G solvation = -20606.220076 eV Core-core repulsion = 17185.712130 eV Total energy + Delta-G solvation = -3420.507946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.35415 -39.65314 -38.15646 -34.62937 -34.09258 -33.58935 -33.01740 -31.40278 -31.14584 -28.26661 -26.36693 -24.59683 -22.75621 -21.67462 -20.54362 -19.71513 -19.22585 -18.10086 -17.64450 -16.17163 -16.07208 -15.43652 -15.27148 -15.17570 -14.59433 -14.20134 -14.04295 -13.75859 -13.62222 -13.18988 -13.02120 -12.92022 -12.73662 -12.30009 -12.15112 -11.93754 -11.80239 -11.63364 -11.14478 -10.40991 -10.32613 -10.06611 -9.78938 -9.64760 -9.62155 -8.71047 -8.62708 -8.10043 -7.78863 -6.51573 -3.93530 0.59303 2.14545 2.71613 3.10137 3.15641 3.22149 3.28686 3.56394 3.58499 3.75614 4.12422 4.70044 4.88549 4.89318 4.97847 5.07591 5.17162 5.30262 5.36181 5.40778 5.65751 5.72596 5.77503 5.91628 5.98888 6.04323 6.06458 6.09324 6.32951 6.61749 6.74118 7.32289 7.46182 7.87584 7.92592 8.44806 8.53091 9.04729 9.39572 9.87489 10.65448 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003276 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.584999 B = 8545.061507 C = 9258.308467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.010 3.990 3 C -0.227 4.227 4 C -0.182 4.182 5 C 0.010 3.990 6 C -0.005 4.005 7 C -0.195 4.195 8 C 0.533 3.467 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.111 3.889 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.550 5.550 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 O -0.129 6.129 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.410 0.590 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 13.906 12.932 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 C -0.246 4.246 4 C -0.202 4.202 5 C -0.040 4.040 6 C -0.025 4.025 7 C -0.215 4.215 8 C 0.322 3.678 9 O -0.415 6.415 10 N -0.356 5.356 11 C -0.017 4.017 12 C 0.214 3.786 13 O -0.484 6.484 14 N -0.185 5.185 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 O -0.023 6.023 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.248 0.752 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.089 13.647 12.830 19.172 hybrid contribution 0.012 -0.671 -0.710 0.977 sum 4.101 12.976 12.121 18.224 Atomic orbital electron populations 1.20315 0.85590 1.04157 1.03175 1.22570 0.94093 0.84492 1.03143 1.21308 0.92815 0.99039 1.11463 1.22068 0.98008 0.93041 1.07037 1.19492 0.82979 0.93132 1.08407 1.20580 0.94216 0.91625 0.96074 1.22321 1.01214 0.99455 0.98546 1.17115 0.85875 0.82475 0.82304 1.90859 1.41784 1.42753 1.66091 1.45669 1.30985 1.16913 1.42046 1.20908 0.91191 0.96767 0.92841 1.19775 0.85685 0.88547 0.84573 1.90490 1.35743 1.57314 1.64867 1.41808 1.25571 1.15841 1.35246 1.19785 1.12543 0.91221 1.19845 0.87631 1.25329 0.95296 1.00079 0.97057 1.69629 1.14868 1.36921 1.32100 0.85756 0.78456 0.81265 0.78600 1.19124 1.20611 1.20607 1.84241 1.15694 1.33766 1.68600 0.90529 0.90007 0.89620 0.83850 0.83585 0.82834 0.84354 0.75175 0.89956 0.89969 0.77055 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.41 36.00 0.37 -0.38 16 2 C 0.01 0.13 7.30 -35.41 -0.26 -0.12 16 3 C -0.23 -2.80 10.76 -39.90 -0.43 -3.23 16 4 C -0.18 -2.26 10.90 -38.91 -0.42 -2.68 16 5 C 0.01 0.14 5.32 -38.41 -0.20 -0.06 16 6 C 0.00 -0.06 9.95 -39.23 -0.39 -0.45 16 7 C -0.19 -2.41 9.85 -39.25 -0.39 -2.79 16 8 C 0.53 8.83 7.36 -14.99 -0.11 8.72 16 9 O -0.53 -10.31 12.41 -19.72 -0.24 -10.56 16 10 N -0.70 -12.13 5.52 -64.42 -0.36 -12.48 16 11 C 0.11 2.11 6.15 -5.19 -0.03 2.08 16 12 C 0.43 10.00 7.85 -10.99 -0.09 9.91 16 13 O -0.60 -15.48 15.24 5.55 0.08 -15.40 16 14 N -0.55 -13.81 5.29 -10.97 -0.06 -13.87 16 15 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 16 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.05 13.05 55.50 0.72 -23.32 16 19 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 O -0.13 -2.07 7.81 -20.16 -0.16 -2.23 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.41 6.86 7.39 -40.82 -0.30 6.56 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -33.43 314.93 -6.41 -39.84 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -3.94 Total: 14.61 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.19 Total: 3.06 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.31 Total: -49.68 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.32 Total: -28.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.43 -6.41 -39.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493224462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.238 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds