Wall clock time and date at job start Tue Mar 31 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35155 * 125.48551 * 2 1 4 4 C 1.40317 * 107.20445 * 179.77727 * 3 2 1 5 5 C 1.37942 * 106.52907 * 0.35703 * 4 3 2 6 6 C 1.41609 * 126.10225 * 179.90389 * 5 4 3 7 7 C 1.35628 * 120.00190 * 220.03564 * 6 5 4 8 8 C 1.41551 * 119.99754 * 8.65253 * 7 6 5 9 9 O 1.21777 * 120.00146 * 6.42428 * 8 7 6 10 10 N 1.34784 * 119.99574 * 186.41594 * 8 7 6 11 11 C 1.46502 * 119.99604 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.46836 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00381 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99845 * 180.02562 * 12 11 10 15 15 C 1.37104 * 120.00224 * 180.02562 * 14 12 11 16 16 H 1.07993 * 119.99642 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00080 * 179.97438 * 15 14 12 18 18 N 1.31416 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99744 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47277 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46718 * 120.00493 * 19 17 15 22 22 H 1.48505 * 109.47096 * 239.99903 * 19 17 15 23 23 O 1.34021 * 125.48132 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47218 * 299.97432 * 1 2 3 26 26 H 1.09002 * 109.47131 * 59.97139 * 1 2 3 27 27 H 1.08005 * 126.39557 * 0.02864 * 3 2 1 28 28 H 1.07999 * 126.73348 * 180.22900 * 4 3 2 29 29 H 1.08001 * 120.00026 * 40.03484 * 6 5 4 30 30 H 1.08004 * 119.99976 * 188.93784 * 7 6 5 31 31 H 0.96994 * 120.00274 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.46993 * 300.00264 * 11 10 8 33 33 H 1.09000 * 109.47384 * 60.00115 * 11 10 8 34 34 H 0.96999 * 120.00148 * 359.97438 * 14 12 11 35 35 H 0.97007 * 119.99679 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6239 0.6604 0.0052 5 6 3.5817 -0.7184 -0.0001 6 6 4.6998 -1.5874 0.0006 7 6 4.6861 -2.7108 -0.7592 8 6 3.6401 -2.9236 -1.6889 9 8 2.8180 -2.0483 -1.8915 10 7 3.5542 -4.0950 -2.3500 11 6 2.4719 -4.3151 -3.3126 12 6 2.6019 -5.6934 -3.9079 13 8 3.5094 -6.4202 -3.5625 14 7 1.7101 -6.1181 -4.8249 15 6 1.8280 -7.3723 -5.3662 16 1 2.6356 -8.0196 -5.0581 17 6 0.9083 -7.8103 -6.3112 18 7 -0.0741 -7.0223 -6.6865 19 14 1.0694 -9.5188 -7.0492 20 1 2.2513 -10.2013 -6.4641 21 1 -0.1544 -10.3047 -6.7493 22 1 1.2387 -9.4086 -8.5204 23 8 2.2848 -1.0913 -0.0005 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5134 0.8902 26 1 -0.3633 0.5143 -0.8897 27 1 1.9556 2.1270 0.0004 28 1 4.5087 1.2796 0.0101 29 1 5.5636 -1.3555 0.6061 30 1 5.4707 -3.4451 -0.6516 31 1 4.2088 -4.7923 -2.1884 32 1 1.5111 -4.2279 -2.8052 33 1 2.5333 -3.5694 -4.1052 34 1 0.9846 -5.5368 -5.1015 35 1 -0.7159 -7.3280 -7.3466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493224462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:56 Heat of formation + Delta-G solvation = -60.647796 kcal Electronic energy + Delta-G solvation = -20607.219363 eV Core-core repulsion = 17185.712130 eV Total energy + Delta-G solvation = -3421.507233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.33185 -41.04613 -39.94943 -36.30538 -35.47047 -34.96911 -33.98438 -33.40125 -32.07233 -29.72292 -27.57019 -26.34778 -23.89421 -22.63628 -21.63291 -21.40181 -20.54161 -20.01577 -18.87099 -17.52971 -17.37304 -16.89201 -16.69931 -16.63766 -16.17092 -15.71570 -15.42274 -15.24814 -14.82878 -14.25351 -13.94916 -13.88180 -13.74391 -13.68380 -13.60211 -13.56656 -13.13061 -12.92624 -12.68419 -12.46788 -12.11963 -11.60001 -11.06244 -10.99773 -10.62176 -10.58548 -10.15816 -10.06851 -8.74999 -8.53126 -6.03686 -0.36339 1.16708 1.33795 1.41803 1.56221 1.76362 1.87523 2.13045 2.23850 2.36838 2.49228 3.12191 3.13872 3.82913 3.97441 4.05884 4.17673 4.22456 4.39389 4.40064 4.48786 4.57038 4.69978 4.83358 4.88634 4.89843 5.15103 5.18186 5.31184 5.37214 5.43706 5.74487 5.89828 6.36609 6.44491 6.58639 7.01146 7.23482 7.41849 7.91443 8.64117 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.003276 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.584999 B = 8545.061507 C = 9258.308467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 C -0.235 4.235 4 C -0.180 4.180 5 C -0.026 4.026 6 C 0.018 3.982 7 C -0.219 4.219 8 C 0.530 3.470 9 O -0.567 6.567 10 N -0.706 5.706 11 C 0.126 3.874 12 C 0.433 3.567 13 O -0.623 6.623 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.086 0.914 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.270 1.270 23 O -0.161 6.161 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.168 0.832 28 H 0.175 0.825 29 H 0.203 0.797 30 H 0.171 0.829 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.398 0.602 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 14.746 13.587 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 C -0.253 4.253 4 C -0.199 4.199 5 C -0.075 4.075 6 C -0.001 4.001 7 C -0.239 4.239 8 C 0.321 3.679 9 O -0.450 6.450 10 N -0.360 5.360 11 C -0.002 4.002 12 C 0.220 3.780 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.196 1.196 23 O -0.057 6.057 24 H 0.084 0.916 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.186 0.814 28 H 0.193 0.807 29 H 0.220 0.780 30 H 0.188 0.812 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.232 0.768 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.816 14.508 13.497 20.392 hybrid contribution -0.239 -0.788 -0.847 1.182 sum 4.577 13.720 12.650 19.215 Atomic orbital electron populations 1.20451 0.83811 1.03979 1.04897 1.23311 0.95560 0.84567 1.03292 1.21719 0.92876 0.99934 1.10803 1.22524 0.99099 0.92822 1.05457 1.20206 0.83108 0.94555 1.09659 1.21222 0.94378 0.89820 0.94704 1.22381 1.01182 1.01360 0.98968 1.17796 0.86303 0.81416 0.82342 1.90845 1.43316 1.43593 1.67197 1.45696 1.30608 1.17618 1.42073 1.20667 0.92335 0.93854 0.93381 1.20420 0.84471 0.89685 0.83461 1.90463 1.36598 1.58624 1.65449 1.41859 1.26170 1.15534 1.35917 1.19792 1.13112 0.92257 1.21562 0.89555 1.26158 0.94525 1.03720 0.96753 1.69694 1.15196 1.38446 1.32328 0.84791 0.78481 0.76605 0.77973 1.19381 1.19563 1.19554 1.84215 1.16891 1.35194 1.69372 0.91631 0.87338 0.88720 0.81438 0.80736 0.78042 0.81174 0.74855 0.89464 0.89331 0.76782 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.41 71.23 0.74 -0.71 16 2 C -0.01 -0.40 7.30 24.97 0.18 -0.22 16 3 C -0.23 -5.42 10.76 22.07 0.24 -5.18 16 4 C -0.18 -4.08 10.90 22.71 0.25 -3.84 16 5 C -0.03 -0.68 5.32 23.03 0.12 -0.56 16 6 C 0.02 0.36 9.95 22.50 0.22 0.58 16 7 C -0.22 -5.03 9.85 22.48 0.22 -4.81 16 8 C 0.53 17.36 7.36 85.06 0.63 17.99 16 9 O -0.57 -22.03 12.41 19.15 0.24 -21.79 16 10 N -0.71 -24.38 5.52 -475.92 -2.63 -27.00 16 11 C 0.13 4.85 6.15 85.63 0.53 5.38 16 12 C 0.43 20.57 7.85 87.66 0.69 21.26 16 13 O -0.62 -32.88 15.24 -3.05 -0.05 -32.93 16 14 N -0.56 -28.75 5.29 -307.00 -1.62 -30.37 16 15 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 16 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 19 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 O -0.16 -5.18 7.81 17.56 0.14 -5.04 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.41 13.79 7.39 -92.71 -0.69 13.10 16 32 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 33 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 35 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -73.21 314.93 3.21 -70.00 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.28 Total: 40.26 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.10 Total: 11.71 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.97 Total: -106.27 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: 0.33 Total: -59.76 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -73.21 3.21 -70.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493224462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.349 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds