Wall clock time and date at job start Tue Mar 31 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35163 * 125.47754 * 2 1 4 4 C 1.40317 * 107.20075 * 179.72457 * 3 2 1 5 5 C 1.37947 * 106.52781 * 0.40859 * 4 3 2 6 6 C 1.41613 * 126.10194 * 179.85199 * 5 4 3 7 7 C 1.35622 * 120.00108 * 179.71439 * 6 5 4 8 8 C 1.41555 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21783 * 119.99725 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.72945 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27844 * 10 8 7 12 12 C 1.50701 * 109.46732 * 179.97438 * 11 10 8 13 13 O 1.21295 * 120.00456 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.37104 * 120.00207 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99395 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00064 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46973 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.46950 * 209.99746 * 19 17 15 22 22 H 1.48500 * 109.47089 * 330.00141 * 19 17 15 23 23 O 1.34019 * 125.48858 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47324 * 299.99889 * 1 2 3 26 26 H 1.09001 * 109.47593 * 60.00325 * 1 2 3 27 27 H 1.08001 * 126.39911 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.73387 * 180.29624 * 4 3 2 29 29 H 1.08001 * 119.99624 * 359.72126 * 6 5 4 30 30 H 1.08001 * 120.00267 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99736 * 0.27114 * 10 8 7 32 32 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 33 33 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 34 34 H 0.97005 * 120.00166 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1007 0.0000 4 6 3.6238 0.6607 0.0064 5 6 3.5818 -0.7182 0.0007 6 6 4.7000 -1.5871 0.0012 7 6 4.5148 -2.9306 0.0009 8 6 5.6325 -3.7992 0.0019 9 8 6.7605 -3.3400 0.0035 10 7 5.4485 -5.1343 0.0072 11 6 6.6053 -6.0331 0.0144 12 6 6.1301 -7.4632 0.0198 13 8 4.9421 -7.7077 0.0174 14 7 7.0253 -8.4707 0.0264 15 6 6.5931 -9.7718 0.0308 16 1 5.5353 -9.9893 0.0295 17 6 7.5160 -10.8105 0.0380 18 7 8.8032 -10.5457 0.0402 19 14 6.9271 -12.5832 0.0448 20 1 6.7747 -13.0595 -1.3535 21 1 7.9199 -13.4319 0.7514 22 1 5.6186 -12.6674 0.7418 23 8 2.2850 -1.0912 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.9555 2.1271 -0.0004 28 1 4.5086 1.2800 0.0127 29 1 5.7003 -1.1798 0.0018 30 1 3.5145 -3.3379 -0.0001 31 1 4.5500 -5.5000 0.0063 32 1 7.2100 -5.8542 -0.8747 33 1 7.2050 -5.8465 0.9052 34 1 7.9755 -8.2753 0.0279 35 1 9.4475 -11.2708 0.0448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493224463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:00 Heat of formation + Delta-G solvation = -48.547732 kcal Electronic energy + Delta-G solvation = -19702.523714 eV Core-core repulsion = 16281.541179 eV Total energy + Delta-G solvation = -3420.982535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.83439 -39.72778 -38.16191 -34.66456 -34.29295 -33.65718 -33.53862 -31.53749 -31.34494 -28.43621 -26.64881 -24.60434 -22.89323 -22.13768 -20.61513 -19.78140 -19.30681 -18.07795 -17.47670 -16.71770 -16.53516 -15.66689 -15.40609 -15.24055 -14.73139 -14.48084 -14.13388 -13.83011 -13.60196 -13.45050 -13.43032 -13.24312 -12.75198 -12.40788 -12.18281 -12.09958 -11.97938 -11.62942 -11.12589 -10.76024 -10.45740 -10.31874 -10.05204 -9.87107 -9.63526 -8.81394 -8.63218 -8.10279 -8.04318 -6.51277 -3.93305 0.29725 1.84979 2.50047 2.57323 3.11945 3.22138 3.27125 3.49342 3.53114 3.75088 4.12031 4.37847 4.58881 4.68128 4.88319 4.88921 5.04633 5.04819 5.17274 5.22238 5.34826 5.40483 5.53061 5.82847 5.85767 5.94406 5.97212 6.07766 6.12175 6.23567 6.68418 6.84030 7.46269 7.81509 7.92266 8.42312 8.46735 9.04772 9.39451 9.87414 10.65631 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041087 B = 0.002516 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.320316 B =11126.621206 C =11787.470820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.003 3.997 3 C -0.218 4.218 4 C -0.164 4.164 5 C -0.006 4.006 6 C 0.000 4.000 7 C -0.193 4.193 8 C 0.544 3.456 9 O -0.557 6.557 10 N -0.700 5.700 11 C 0.108 3.892 12 C 0.428 3.572 13 O -0.597 6.597 14 N -0.549 5.549 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 O -0.163 6.163 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.412 0.588 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 20.889 -0.060 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C -0.237 4.237 4 C -0.183 4.183 5 C -0.055 4.055 6 C -0.020 4.020 7 C -0.214 4.214 8 C 0.334 3.666 9 O -0.439 6.439 10 N -0.353 5.353 11 C -0.020 4.020 12 C 0.213 3.787 13 O -0.484 6.484 14 N -0.184 5.184 15 C -0.434 4.434 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 O -0.059 6.059 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.179 0.821 30 H 0.149 0.851 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.192 20.530 -0.052 23.382 hybrid contribution 0.072 -0.853 -0.007 0.856 sum -11.121 19.677 -0.059 22.602 Atomic orbital electron populations 1.20391 0.84882 1.04454 1.03756 1.22738 0.94261 0.84079 1.03759 1.21494 0.92723 0.99516 1.09939 1.22324 0.98455 0.93155 1.04410 1.19859 0.81997 0.93545 1.10082 1.20639 0.95462 0.92099 0.93830 1.22130 0.99669 0.94264 1.05330 1.16940 0.89462 0.82513 0.77666 1.90821 1.25147 1.76656 1.51234 1.45673 1.11158 1.05258 1.73245 1.20964 0.88606 0.89061 1.03350 1.19758 0.87120 0.86200 0.85577 1.90498 1.16356 1.84207 1.57356 1.41802 1.08543 1.05433 1.62624 1.19733 0.94817 0.80652 1.48234 0.87680 1.25332 0.94877 1.00750 0.96800 1.69617 1.00568 1.33966 1.49334 0.85806 0.78547 0.81149 0.78484 1.20259 1.20793 1.19318 1.84068 1.16374 1.34751 1.70703 0.90259 0.89388 0.89389 0.83056 0.82606 0.82120 0.85142 0.74965 0.89696 0.89702 0.77008 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 36.01 0.37 -0.03 16 2 C 0.00 0.03 7.30 -35.40 -0.26 -0.23 16 3 C -0.22 -1.84 10.76 -39.89 -0.43 -2.27 16 4 C -0.16 -1.55 10.90 -38.91 -0.42 -1.98 16 5 C -0.01 -0.07 6.84 -38.40 -0.26 -0.33 16 6 C 0.00 0.00 9.39 -39.23 -0.37 -0.37 16 7 C -0.19 -2.56 9.41 -39.25 -0.37 -2.93 16 8 C 0.54 8.93 7.56 -15.00 -0.11 8.82 16 9 O -0.56 -10.54 16.11 5.11 0.08 -10.46 16 10 N -0.70 -12.10 5.52 -64.43 -0.36 -12.45 16 11 C 0.11 2.03 6.15 -5.20 -0.03 2.00 16 12 C 0.43 9.95 7.85 -10.99 -0.09 9.86 16 13 O -0.60 -15.49 15.24 5.54 0.08 -15.41 16 14 N -0.55 -13.76 5.29 -10.96 -0.06 -13.81 16 15 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 16 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.01 13.05 55.50 0.72 -23.29 16 19 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 O -0.16 -1.88 10.18 4.71 0.05 -1.83 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.16 1.80 7.46 -52.49 -0.39 1.40 16 30 H 0.13 1.56 7.72 -52.49 -0.41 1.16 16 31 H 0.41 6.98 7.39 -40.82 -0.30 6.68 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -32.49 320.77 -5.76 -38.25 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -3.89 Total: 13.94 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.21 Total: 4.61 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.31 Total: -49.55 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.21 Total: -27.70 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.49 -5.76 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493224463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.295 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds