Wall clock time and date at job start Tue Mar 31 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35163 * 125.47754 * 2 1 4 4 C 1.40317 * 107.20075 * 179.72457 * 3 2 1 5 5 C 1.37947 * 106.52781 * 0.40859 * 4 3 2 6 6 C 1.41613 * 126.10194 * 179.85199 * 5 4 3 7 7 C 1.35622 * 120.00108 * 179.71439 * 6 5 4 8 8 C 1.41555 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21783 * 119.99725 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.72945 * 8 7 6 11 11 C 1.46495 * 119.99663 * 180.27844 * 10 8 7 12 12 C 1.50701 * 109.46732 * 179.97438 * 11 10 8 13 13 O 1.21295 * 120.00456 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.37104 * 120.00207 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99395 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00064 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00029 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46973 * 89.99963 * 19 17 15 21 21 H 1.48497 * 109.46950 * 209.99746 * 19 17 15 22 22 H 1.48500 * 109.47089 * 330.00141 * 19 17 15 23 23 O 1.34019 * 125.48858 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46800 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47324 * 299.99889 * 1 2 3 26 26 H 1.09001 * 109.47593 * 60.00325 * 1 2 3 27 27 H 1.08001 * 126.39911 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.73387 * 180.29624 * 4 3 2 29 29 H 1.08001 * 119.99624 * 359.72126 * 6 5 4 30 30 H 1.08001 * 120.00267 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99736 * 0.27114 * 10 8 7 32 32 H 1.08999 * 109.47534 * 299.99482 * 11 10 8 33 33 H 1.08997 * 109.47774 * 59.99894 * 11 10 8 34 34 H 0.97005 * 120.00166 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99613 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.1007 0.0000 4 6 3.6238 0.6607 0.0064 5 6 3.5818 -0.7182 0.0007 6 6 4.7000 -1.5871 0.0012 7 6 4.5148 -2.9306 0.0009 8 6 5.6325 -3.7992 0.0019 9 8 6.7605 -3.3400 0.0035 10 7 5.4485 -5.1343 0.0072 11 6 6.6053 -6.0331 0.0144 12 6 6.1301 -7.4632 0.0198 13 8 4.9421 -7.7077 0.0174 14 7 7.0253 -8.4707 0.0264 15 6 6.5931 -9.7718 0.0308 16 1 5.5353 -9.9893 0.0295 17 6 7.5160 -10.8105 0.0380 18 7 8.8032 -10.5457 0.0402 19 14 6.9271 -12.5832 0.0448 20 1 6.7747 -13.0595 -1.3535 21 1 7.9199 -13.4319 0.7514 22 1 5.6186 -12.6674 0.7418 23 8 2.2850 -1.0912 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.9555 2.1271 -0.0004 28 1 4.5086 1.2800 0.0127 29 1 5.7003 -1.1798 0.0018 30 1 3.5145 -3.3379 -0.0001 31 1 4.5500 -5.5000 0.0063 32 1 7.2100 -5.8542 -0.8747 33 1 7.2050 -5.8465 0.9052 34 1 7.9755 -8.2753 0.0279 35 1 9.4475 -11.2708 0.0448 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493224463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:00 Heat of formation + Delta-G solvation = -71.562058 kcal Electronic energy + Delta-G solvation = -19703.521690 eV Core-core repulsion = 16281.541179 eV Total energy + Delta-G solvation = -3421.980511 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.58275 -41.13089 -39.97097 -36.29925 -35.50501 -35.19785 -34.25565 -33.39597 -32.20924 -29.78996 -27.76702 -26.34132 -23.92044 -22.87706 -21.58150 -21.41405 -20.60449 -20.02124 -18.68122 -17.81719 -17.32350 -17.30032 -16.74323 -16.67169 -16.40410 -15.78753 -15.52703 -15.45907 -15.00573 -14.14938 -13.97333 -13.89513 -13.83242 -13.62734 -13.57734 -13.54267 -13.25795 -12.91803 -12.72940 -12.47155 -12.13177 -11.67280 -11.58533 -11.21101 -10.77527 -10.58567 -10.23299 -10.09974 -8.86204 -8.52262 -6.02738 -0.62810 1.07233 1.35630 1.42090 1.54979 1.66579 1.88051 1.88667 2.09377 2.33532 2.39178 3.11283 3.14726 3.65571 3.84951 3.95624 4.09321 4.15967 4.26240 4.42161 4.44231 4.48930 4.68385 4.72924 4.80342 4.87065 5.10490 5.12065 5.23411 5.28716 5.37254 5.55939 5.90335 6.09834 6.44262 6.51220 7.01878 7.12047 7.42365 7.92725 8.64671 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041087 B = 0.002516 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.320316 B =11126.621206 C =11787.470820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.005 3.995 3 C -0.227 4.227 4 C -0.145 4.145 5 C -0.050 4.050 6 C 0.034 3.966 7 C -0.228 4.228 8 C 0.551 3.449 9 O -0.588 6.588 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.432 3.568 13 O -0.625 6.625 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.086 0.914 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.270 1.270 23 O -0.184 6.184 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.138 0.862 31 H 0.413 0.587 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.399 0.601 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 22.530 -0.072 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C -0.246 4.246 4 C -0.164 4.164 5 C -0.099 4.099 6 C 0.014 3.986 7 C -0.248 4.248 8 C 0.344 3.656 9 O -0.472 6.472 10 N -0.358 5.358 11 C -0.007 4.007 12 C 0.219 3.781 13 O -0.514 6.514 14 N -0.194 5.194 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.195 1.195 23 O -0.081 6.081 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.198 0.802 28 H 0.196 0.804 29 H 0.184 0.816 30 H 0.155 0.845 31 H 0.251 0.749 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.183 22.190 -0.065 25.315 hybrid contribution 0.252 -1.097 -0.004 1.126 sum -11.932 21.093 -0.069 24.234 Atomic orbital electron populations 1.20621 0.82351 1.05002 1.05656 1.23632 0.95851 0.83765 1.01439 1.21913 0.92101 1.00807 1.09760 1.22786 0.99955 0.92549 1.01131 1.19906 0.81981 0.94274 1.13700 1.20758 0.96162 0.91662 0.90045 1.21871 0.98784 0.94336 1.09837 1.17275 0.89850 0.82120 0.76378 1.90793 1.26410 1.76907 1.53052 1.45679 1.10596 1.05518 1.73983 1.20791 0.89265 0.86277 1.04369 1.20437 0.86495 0.87589 0.83596 1.90472 1.17653 1.85140 1.58089 1.41851 1.08906 1.05313 1.63362 1.19740 0.94319 0.82194 1.50489 0.89631 1.26153 0.94903 1.04399 0.95728 1.69682 1.01313 1.35375 1.49189 0.84851 0.78086 0.76194 0.78745 1.19495 1.19550 1.19479 1.84065 1.16722 1.36118 1.71222 0.90453 0.87369 0.87365 0.80198 0.80365 0.81611 0.84457 0.74855 0.88608 0.88618 0.76640 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.41 71.24 0.74 0.12 16 2 C 0.00 0.08 7.30 24.98 0.18 0.26 16 3 C -0.23 -3.16 10.76 22.07 0.24 -2.93 16 4 C -0.15 -2.39 10.90 22.71 0.25 -2.14 16 5 C -0.05 -1.08 6.84 23.03 0.16 -0.93 16 6 C 0.03 0.78 9.39 22.50 0.21 1.00 16 7 C -0.23 -6.12 9.41 22.48 0.21 -5.91 16 8 C 0.55 18.32 7.56 85.06 0.64 18.96 16 9 O -0.59 -22.37 16.11 -4.61 -0.07 -22.44 16 10 N -0.71 -24.73 5.52 -475.94 -2.63 -27.36 16 11 C 0.12 4.59 6.15 85.63 0.53 5.12 16 12 C 0.43 20.49 7.85 87.66 0.69 21.18 16 13 O -0.63 -33.23 15.24 -3.08 -0.05 -33.28 16 14 N -0.56 -28.61 5.29 -306.98 -1.62 -30.24 16 15 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 16 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 19 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 O -0.18 -4.08 10.18 -6.06 -0.06 -4.14 16 24 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.17 3.60 7.46 -2.91 -0.02 3.57 16 30 H 0.14 3.40 7.72 -2.91 -0.02 3.38 16 31 H 0.41 14.38 7.39 -92.71 -0.69 13.69 16 32 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 35 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -70.02 320.77 2.73 -67.29 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.28 Total: 38.27 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.13 Total: 16.52 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.97 Total: -106.38 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.18 Total: -59.86 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -70.02 2.73 -67.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493224463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.268 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds