Wall clock time and date at job start Tue Mar 31 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34649 * 116.99670 * 2 1 4 4 O 1.21515 * 120.00084 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.39933 * 119.99993 * 184.43440 * 5 3 2 7 7 C 1.39005 * 120.02961 * 325.30859 * 6 5 3 8 8 C 1.38190 * 120.09805 * 180.02562 * 7 6 5 9 9 C 1.38124 * 120.14860 * 359.95034 * 8 7 6 10 10 C 1.39073 * 120.05838 * 359.78913 * 9 8 7 11 11 N 1.39518 * 120.05565 * 180.25097 * 10 9 8 12 12 C 1.34780 * 119.99504 * 34.22305 * 11 10 9 13 13 O 1.21745 * 120.00029 * 5.56801 * 12 11 10 14 14 C 1.46158 * 119.99908 * 185.57420 * 12 11 10 15 15 H 1.08002 * 120.00112 * 354.94947 * 14 12 11 16 16 C 1.40130 * 119.99994 * 174.95453 * 14 12 11 17 17 N 1.30635 * 119.99820 * 5.04704 * 16 14 12 18 18 Si 1.86799 * 119.99870 * 185.04537 * 16 14 12 19 19 H 1.48499 * 109.46858 * 95.00117 * 18 16 14 20 20 H 1.48506 * 109.46850 * 214.99793 * 18 16 14 21 21 H 1.48496 * 109.47366 * 334.99929 * 18 16 14 22 22 C 1.38659 * 120.02815 * 145.32457 * 6 5 3 23 23 C 1.50704 * 120.07603 * 359.95770 * 22 6 5 24 24 H 1.09002 * 109.47361 * 299.99276 * 1 2 3 25 25 H 1.09000 * 109.47525 * 59.99321 * 1 2 3 26 26 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99725 * 4.44123 * 5 3 2 28 28 H 1.08005 * 119.95141 * 0.02562 * 7 6 5 29 29 H 1.07993 * 119.92395 * 179.97438 * 8 7 6 30 30 H 1.08006 * 119.97491 * 180.02562 * 9 8 7 31 31 H 0.96995 * 120.00479 * 214.22075 * 11 10 9 32 32 H 0.97003 * 119.99812 * 179.97438 * 17 16 14 33 33 H 1.09008 * 109.46949 * 89.99451 * 23 22 6 34 34 H 1.08996 * 109.47081 * 209.99898 * 23 22 6 35 35 H 1.09002 * 109.46491 * 330.00212 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0446 2.5136 0.0942 7 6 3.4763 3.6321 -0.5043 8 6 4.1029 4.8604 -0.4131 9 6 5.2951 4.9817 0.2737 10 6 5.8665 3.8679 0.8795 11 7 7.0681 3.9915 1.5776 12 6 7.3381 5.1225 2.2593 13 8 6.4934 5.9946 2.3505 14 6 8.6448 5.3020 2.8889 15 1 9.3646 4.4969 2.8781 16 6 8.9637 6.5187 3.5066 17 7 8.0602 7.4569 3.6068 18 14 10.6807 6.7990 4.1868 19 1 11.5056 7.5042 3.1731 20 1 10.5965 7.6250 5.4181 21 1 11.3048 5.4909 4.5099 22 6 5.2418 2.6307 0.7839 23 6 5.8602 1.4201 1.4345 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9373 0.4593 -0.0642 28 1 2.5438 3.5410 -1.0414 29 1 3.6591 5.7275 -0.8795 30 1 5.7822 5.9432 0.3435 31 1 7.7092 3.2637 1.5725 32 1 8.2808 8.2990 4.0347 33 1 6.5271 0.9280 0.7264 34 1 6.4268 1.7293 2.3127 35 1 5.0738 0.7275 1.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497027253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:20 Heat of formation + Delta-G solvation = -87.214858 kcal Electronic energy + Delta-G solvation = -21066.999552 eV Core-core repulsion = 17644.340285 eV Total energy + Delta-G solvation = -3422.659267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86848 -39.38359 -37.56375 -36.29830 -34.77408 -33.48546 -32.58944 -31.32509 -28.87022 -27.59400 -26.61886 -25.92029 -23.09414 -21.45406 -20.91870 -19.65217 -18.93058 -17.55592 -17.28175 -16.65062 -16.29860 -15.60068 -15.01606 -14.95850 -14.31412 -14.25719 -13.93445 -13.74317 -13.28691 -12.93547 -12.58051 -12.54598 -12.28530 -12.07751 -11.72562 -11.39236 -11.20875 -11.13080 -10.93954 -10.82138 -10.64495 -10.47130 -10.33458 -10.05609 -9.18131 -8.86069 -7.94251 -7.68574 -7.01444 -6.36211 -4.82862 1.71288 1.98637 2.10048 2.82270 3.06363 3.13692 3.17136 3.97459 4.12514 4.23553 4.51513 4.66493 4.94198 5.02496 5.24009 5.26976 5.36431 5.58693 5.64848 5.76317 5.83357 5.99577 6.04218 6.12240 6.24699 6.38528 6.63803 6.75592 7.05509 7.17142 7.27272 7.33886 7.45463 7.72549 8.04242 8.16186 8.24172 8.84118 9.20551 10.37766 10.55793 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.003678 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.808923 B = 7610.999577 C = 7960.365959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.644 3.356 4 O -0.551 6.551 5 N -0.643 5.643 6 C 0.163 3.837 7 C -0.157 4.157 8 C -0.089 4.089 9 C -0.132 4.132 10 C 0.210 3.790 11 N -0.696 5.696 12 C 0.543 3.457 13 O -0.557 6.557 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.758 5.758 18 Si 0.913 3.087 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.163 4.163 23 C -0.108 4.108 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.413 0.587 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.393 0.607 32 H 0.272 0.728 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.107 -14.125 -7.211 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.398 3.602 4 O -0.439 6.439 5 N -0.294 5.294 6 C 0.070 3.930 7 C -0.179 4.179 8 C -0.109 4.109 9 C -0.153 4.153 10 C 0.110 3.890 11 N -0.340 5.340 12 C 0.350 3.650 13 O -0.439 6.439 14 C -0.575 4.575 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.386 5.386 18 Si 0.737 3.263 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.169 4.169 23 C -0.165 4.165 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.249 0.751 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.157 0.843 31 H 0.226 0.774 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.116 -12.824 -6.992 16.710 hybrid contribution 1.154 -0.576 0.392 1.348 sum -6.962 -13.400 -6.600 16.480 Atomic orbital electron populations 1.23208 0.74203 1.03432 1.02939 1.86227 1.24359 1.30993 1.87144 1.18111 0.83289 0.82285 0.76549 1.91022 1.64394 1.34401 1.54047 1.41850 1.03055 1.09419 1.75051 1.16889 0.92957 0.83623 0.99517 1.20988 1.01730 0.91922 1.03217 1.20842 0.94878 0.96523 0.98619 1.21362 0.97112 0.99643 0.97227 1.17467 0.88359 0.91983 0.91151 1.44151 1.16865 1.21120 1.51866 1.18391 0.88975 0.79379 0.78301 1.90656 1.48403 1.41605 1.63209 1.20847 0.98633 1.00380 1.37641 0.90985 1.25744 0.98308 0.95342 0.94093 1.69991 1.33221 1.04287 1.31135 0.86268 0.82187 0.79124 0.78716 1.19634 1.20305 1.18761 1.19277 0.96947 0.95971 1.04702 1.20580 1.00336 0.94995 1.00549 0.91686 0.91754 0.87955 0.75081 0.85140 0.86137 0.84331 0.77371 0.91720 0.91767 0.90921 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -4.31 10.62 -40.35 -0.43 -4.74 16 3 C 0.64 9.33 8.59 54.06 0.46 9.80 16 4 O -0.55 -9.67 13.54 -19.28 -0.26 -9.93 16 5 N -0.64 -8.73 4.75 -14.29 -0.07 -8.79 16 6 C 0.16 2.72 6.28 -83.72 -0.53 2.20 16 7 C -0.16 -2.80 8.70 -39.31 -0.34 -3.14 16 8 C -0.09 -1.66 10.03 -39.64 -0.40 -2.06 16 9 C -0.13 -2.84 8.65 -39.31 -0.34 -3.18 16 10 C 0.21 4.38 6.24 -83.80 -0.52 3.85 16 11 N -0.70 -15.29 4.75 -11.22 -0.05 -15.35 16 12 C 0.54 14.82 7.46 -13.08 -0.10 14.72 16 13 O -0.56 -17.27 12.78 5.15 0.07 -17.20 16 14 C -0.54 -14.48 9.53 -35.70 -0.34 -14.82 16 15 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 16 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 17 N -0.76 -21.86 11.84 55.55 0.66 -21.20 16 18 Si 0.91 19.29 29.56 -169.99 -5.03 14.27 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.16 -2.83 5.92 -104.21 -0.62 -3.45 16 23 C -0.11 -1.46 8.94 36.01 0.32 -1.14 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.41 4.28 7.95 -40.82 -0.32 3.95 16 28 H 0.13 2.28 6.19 -52.48 -0.32 1.96 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.14 3.36 6.48 -52.48 -0.34 3.02 16 31 H 0.39 7.33 7.78 -40.82 -0.32 7.01 16 32 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 1.06 7.15 -51.93 -0.37 0.69 16 35 H 0.06 0.71 7.17 -51.93 -0.37 0.33 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -34.52 305.04 -5.65 -40.17 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.71 Total: 11.64 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.42 Total: 6.54 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.54 Total: -45.34 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.62 Total: -31.87 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.52 -5.65 -40.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497027253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.048 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds