Wall clock time and date at job start Tue Mar 31 2020 00:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34649 * 116.99670 * 2 1 4 4 O 1.21515 * 120.00084 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99796 * 179.97438 * 3 2 1 6 6 C 1.39933 * 119.99993 * 184.43440 * 5 3 2 7 7 C 1.39005 * 120.02961 * 325.30859 * 6 5 3 8 8 C 1.38190 * 120.09805 * 180.02562 * 7 6 5 9 9 C 1.38124 * 120.14860 * 359.95034 * 8 7 6 10 10 C 1.39073 * 120.05838 * 359.78913 * 9 8 7 11 11 N 1.39518 * 120.05565 * 180.25097 * 10 9 8 12 12 C 1.34780 * 119.99504 * 34.22305 * 11 10 9 13 13 O 1.21745 * 120.00029 * 5.56801 * 12 11 10 14 14 C 1.46158 * 119.99908 * 185.57420 * 12 11 10 15 15 H 1.08002 * 120.00112 * 354.94947 * 14 12 11 16 16 C 1.40130 * 119.99994 * 174.95453 * 14 12 11 17 17 N 1.30635 * 119.99820 * 5.04704 * 16 14 12 18 18 Si 1.86799 * 119.99870 * 185.04537 * 16 14 12 19 19 H 1.48499 * 109.46858 * 95.00117 * 18 16 14 20 20 H 1.48506 * 109.46850 * 214.99793 * 18 16 14 21 21 H 1.48496 * 109.47366 * 334.99929 * 18 16 14 22 22 C 1.38659 * 120.02815 * 145.32457 * 6 5 3 23 23 C 1.50704 * 120.07603 * 359.95770 * 22 6 5 24 24 H 1.09002 * 109.47361 * 299.99276 * 1 2 3 25 25 H 1.09000 * 109.47525 * 59.99321 * 1 2 3 26 26 H 1.09004 * 109.47348 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99725 * 4.44123 * 5 3 2 28 28 H 1.08005 * 119.95141 * 0.02562 * 7 6 5 29 29 H 1.07993 * 119.92395 * 179.97438 * 8 7 6 30 30 H 1.08006 * 119.97491 * 180.02562 * 9 8 7 31 31 H 0.96995 * 120.00479 * 214.22075 * 11 10 9 32 32 H 0.97003 * 119.99812 * 179.97438 * 17 16 14 33 33 H 1.09008 * 109.46949 * 89.99451 * 23 22 6 34 34 H 1.08996 * 109.47081 * 209.99898 * 23 22 6 35 35 H 1.09002 * 109.46491 * 330.00212 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0446 2.5136 0.0942 7 6 3.4763 3.6321 -0.5043 8 6 4.1029 4.8604 -0.4131 9 6 5.2951 4.9817 0.2737 10 6 5.8665 3.8679 0.8795 11 7 7.0681 3.9915 1.5776 12 6 7.3381 5.1225 2.2593 13 8 6.4934 5.9946 2.3505 14 6 8.6448 5.3020 2.8889 15 1 9.3646 4.4969 2.8781 16 6 8.9637 6.5187 3.5066 17 7 8.0602 7.4569 3.6068 18 14 10.6807 6.7990 4.1868 19 1 11.5056 7.5042 3.1731 20 1 10.5965 7.6250 5.4181 21 1 11.3048 5.4909 4.5099 22 6 5.2418 2.6307 0.7839 23 6 5.8602 1.4201 1.4345 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9373 0.4593 -0.0642 28 1 2.5438 3.5410 -1.0414 29 1 3.6591 5.7275 -0.8795 30 1 5.7822 5.9432 0.3435 31 1 7.7092 3.2637 1.5725 32 1 8.2808 8.2990 4.0347 33 1 6.5271 0.9280 0.7264 34 1 6.4268 1.7293 2.3127 35 1 5.0738 0.7275 1.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497027253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:20 Heat of formation + Delta-G solvation = -112.610238 kcal Electronic energy + Delta-G solvation = -21068.100778 eV Core-core repulsion = 17644.340285 eV Total energy + Delta-G solvation = -3423.760493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06442 -40.86383 -39.17660 -37.58544 -36.17933 -35.16783 -34.59477 -32.78541 -30.36715 -28.69740 -28.12473 -27.45191 -24.50766 -22.93735 -22.33217 -21.28743 -20.14231 -19.34734 -18.69157 -17.72378 -17.55444 -17.49523 -16.57403 -16.39223 -15.87746 -15.72906 -15.16372 -14.96880 -14.57846 -14.43906 -14.26104 -14.17785 -13.48424 -13.23470 -13.01443 -12.97747 -12.81042 -12.68079 -12.57081 -12.24783 -12.02227 -11.84552 -11.77246 -11.48463 -10.99636 -10.67641 -9.92640 -9.19802 -8.69191 -8.36180 -6.93005 0.29319 0.46802 1.01558 1.41261 1.41845 1.58416 1.63748 2.21916 2.38709 2.82281 2.94618 3.20150 3.59068 3.92758 4.06839 4.20875 4.34484 4.37317 4.45849 4.56925 4.65240 4.72000 4.80712 4.81689 5.11418 5.19829 5.26945 5.29086 5.35749 5.49252 5.63451 5.80750 5.90111 6.18093 6.24532 6.38389 6.79299 7.14366 7.35354 8.37045 8.58054 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.003678 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.808923 B = 7610.999577 C = 7960.365959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.645 3.355 4 O -0.585 6.585 5 N -0.630 5.630 6 C 0.170 3.830 7 C -0.155 4.155 8 C -0.090 4.090 9 C -0.160 4.160 10 C 0.179 3.821 11 N -0.686 5.686 12 C 0.530 3.470 13 O -0.607 6.607 14 C -0.564 4.564 15 H 0.095 0.905 16 C 0.029 3.971 17 N -0.814 5.814 18 Si 1.002 2.998 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.245 1.245 22 C -0.149 4.149 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.431 0.569 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.099 0.901 31 H 0.408 0.592 32 H 0.277 0.723 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 -17.174 -7.295 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.278 6.278 3 C 0.400 3.600 4 O -0.475 6.475 5 N -0.283 5.283 6 C 0.076 3.924 7 C -0.177 4.177 8 C -0.109 4.109 9 C -0.181 4.181 10 C 0.081 3.919 11 N -0.330 5.330 12 C 0.337 3.663 13 O -0.492 6.492 14 C -0.600 4.600 15 H 0.113 0.887 16 C -0.187 4.187 17 N -0.443 5.443 18 Si 0.821 3.179 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.168 1.168 22 C -0.155 4.155 23 C -0.163 4.163 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.160 0.840 27 H 0.271 0.729 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.117 0.883 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.581 -15.984 -7.113 19.067 hybrid contribution 0.792 0.240 0.329 0.890 sum -6.789 -15.744 -6.784 18.439 Atomic orbital electron populations 1.23591 0.72251 1.05995 1.02762 1.86259 1.26110 1.28900 1.86482 1.18232 0.83275 0.82698 0.75826 1.91008 1.65167 1.35855 1.55490 1.41652 1.03150 1.08938 1.74527 1.16879 0.92565 0.84660 0.98248 1.21141 1.01661 0.91902 1.02951 1.20961 0.93899 0.97865 0.98185 1.21179 0.98679 0.98547 0.99745 1.17675 0.88626 0.93346 0.92253 1.43632 1.17852 1.20188 1.51361 1.18753 0.89001 0.80036 0.78553 1.90616 1.49813 1.43714 1.65091 1.21401 0.99024 1.01621 1.37909 0.88687 1.27022 1.03345 0.94576 0.93794 1.70160 1.36375 1.05200 1.32547 0.84941 0.75477 0.79722 0.77798 1.18816 1.19901 1.16793 1.19519 0.96609 0.95894 1.03471 1.20697 1.01372 0.93667 1.00598 0.92243 0.91660 0.84008 0.72878 0.84450 0.84507 0.88323 0.75547 0.91298 0.88379 0.92002 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.56 113.37 1.20 1.85 16 2 O -0.36 -7.30 10.62 -55.58 -0.59 -7.89 16 3 C 0.65 17.15 8.59 129.79 1.12 18.26 16 4 O -0.59 -19.66 13.54 19.79 0.27 -19.40 16 5 N -0.63 -15.28 4.75 -429.51 -2.04 -17.33 16 6 C 0.17 5.42 6.28 38.13 0.24 5.66 16 7 C -0.16 -5.44 8.70 22.44 0.20 -5.24 16 8 C -0.09 -3.44 10.03 22.23 0.22 -3.22 16 9 C -0.16 -7.27 8.65 22.44 0.19 -7.07 16 10 C 0.18 7.63 6.24 38.28 0.24 7.87 16 11 N -0.69 -30.79 4.75 -307.59 -1.46 -32.25 16 12 C 0.53 30.10 7.46 86.30 0.64 30.74 16 13 O -0.61 -39.90 12.78 -4.49 -0.06 -39.96 16 14 C -0.56 -30.75 9.53 24.79 0.24 -30.52 16 15 H 0.10 4.55 7.85 -2.91 -0.02 4.53 16 16 C 0.03 1.56 5.50 85.33 0.47 2.03 16 17 N -0.81 -48.73 11.84 21.85 0.26 -48.47 16 18 Si 1.00 39.50 29.56 68.60 2.03 41.52 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.24 -8.83 7.11 99.48 0.71 -8.13 16 22 C -0.15 -4.98 5.92 -19.60 -0.12 -5.10 16 23 C -0.11 -2.57 8.94 71.24 0.64 -1.93 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.43 7.25 7.95 -92.71 -0.74 6.51 16 28 H 0.14 4.67 6.19 -2.91 -0.02 4.65 16 29 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.10 5.25 6.48 -2.91 -0.02 5.23 16 31 H 0.41 15.14 7.78 -92.71 -0.72 14.42 16 32 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16 33 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.06 1.67 7.15 -2.39 -0.02 1.65 16 35 H 0.08 1.62 7.17 -2.39 -0.02 1.60 16 Total: -1.00 -79.30 305.04 3.38 -75.92 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.30 Total: 34.52 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.27 Total: 13.32 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.24 Total: -98.05 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -0.38 Total: -67.25 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Total: -79.30 3.38 -75.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497027253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.690 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds